BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34430.1 Length=1008 Score E Sequences producing significant alignments: (Bits) Value Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1 1537 0.0 Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1 1075 0.0 Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 935 0.0 Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 928 0.0 > Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1 Length=987 Score = 1537 bits (832), Expect = 0.0 Identities = 934/984 (95%), Gaps = 3/984 (0%) Strand=Plus/Plus Query 22 TTAACTAAAGAGCCTTTTACTTGCGCCACACTCTCACCGCAATGGCCGCCTCGACAATGG 81 ||||||||| | || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 6 TTAACTAAA-AACCATTTACTTGCACCACACTCTCACCGCAATGGCCGCCTCGACAATGG 64 Query 82 CTCTCTCCTCTCCTGCTTTGACCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAG 141 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 65 CTCTCTCCTCTCCTGCTATGGCCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAG 124 Query 142 TATTTGGAACCGGCCGAATCACCATGCGCAAAGCCTCCAAGCCCACCGGTCCATCCGGCA 201 ||||||||| ||||||| | |||||||||||||||||||| |||||||||||||| |||| Sbjct 125 TATTTGGAATCGGCCGAGTTACCATGCGCAAAGCCTCCAAACCCACCGGTCCATCAGGCA 184 Query 202 GCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGA 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 GCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGA 244 Query 262 GCTACCTCACTGGAGAGTTCCCCGGTGATTACGGGTGGGACACTGCCGGTCTATCCGCCG 321 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | Sbjct 245 GCTACCTCACTGGAGAATTCCCCGGTGACTACGGGTGGGACACTGCCGGTCTATCCGCAG 304 Query 322 ATCCCGAGACCTTCGCTAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGC 381 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 ACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGC 364 Query 382 TCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAG 441 ||||||||||||||||||||||||||||||| |||||| | || ||||| || ||||||| Sbjct 365 TCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTGGCTCGCAATGGAGTCAAATTCGGAG 424 Query 442 AAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGG 501 | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 425 AGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGATGGAGGATTGGACTACTTGG 484 Query 502 GCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCC 561 |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 485 GCAATCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCCACTCAAGTGATCC 544 Query 562 TCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGG 621 |||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||| Sbjct 545 TCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCCATTGGGAGAGGCAGAGG 604 Query 622 ACTTGCTTTACCCAGGTGGGAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGC-T 680 ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| | Sbjct 605 ACTTGCTTTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTACTGACCCCGAGGCGT 664 Query 681 TTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTT 740 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 TT-GCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTT 723 Query 741 GGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAACCTCGCGGACCAC 800 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 724 GGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAATCTTGCTGACCAC 783 Query 801 TTGGCTGATCCAGTCAACAACAATGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAG 860 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 784 TTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAG 843 Query 861 TGAGTTTAATTTGTGATCGAGTTGTGTGTATCCGGTTTGTTGCATCTTGGAAATGTGATG 920 |||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||| Sbjct 844 TGAGTTTAATATGTGATCAAGTTGTGTGTATCTGGTTTGTTGAATCTTGGAAATGTGATG 903 Query 921 CAGATTTCATATCTTGTAAATTACTTTGTATGTGTGTGAAATATTTAAGAAGCTTTATGA 980 |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 904 CAGATTTCATCTCTTGTATATTACTTTGTAAGTGTGTGAAATATTTAAGAAGCTTTATGA 963 Query 981 TATTGATGGATCAGTCACTTACTA 1004 |||||||||||||||||||||||| Sbjct 964 TATTGATGGATCAGTCACTTACTA 987 > Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1 Length=798 Score = 1075 bits (582), Expect = 0.0 Identities = 651/685 (95%), Gaps = 2/685 (0%) Strand=Plus/Plus Query 178 CCAAGCCCACCGGTCCATCCGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGG 237 ||||||| | |||||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct 53 CCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGG 112 Query 238 GTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAGTTCCCCGGTGATTACGGGT 297 ||||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||||| | Sbjct 113 GTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGAT 172 Query 298 GGGACACTGCCGGTCTATCCGCCGATCCC-GAGACCTTCGCTAGGAACCGTGAGCTAGAA 356 ||||||| |||||||||||||| || ||| ||||||||||| |||||||||||||||||| Sbjct 173 GGGACACCGCCGGTCTATCCGCTGA-CCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAA 231 Query 357 GTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTG 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 GTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTG 291 Query 417 GCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTTC 476 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 292 GCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTC 351 Query 477 AGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTA 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 AGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTA 411 Query 537 GCCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGGA 596 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 412 GCCATTTGGGCTACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGA 471 Query 597 GATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGGAGCTTCGACCCATTG 656 |||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 472 AATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTG 531 Query 657 GGCCTCGCTACTGACCCCGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 716 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 532 GGCCTCGCTACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGG 591 Query 717 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGA 776 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 592 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGA 651 Query 777 CCGTTGGAGAACCTCGCGGACCACTTGGCTGATCCAGTCAACAACAATGCATGGGCCTTC 836 || |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||| Sbjct 652 CCTTTGGAGAACCTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTC 711 Query 837 GCTACCAACTTCGTCCCCGGAAAGT 861 || |||||||||||||||||||||| Sbjct 712 GCCACCAACTTCGTCCCCGGAAAGT 736 > Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 Length=1002 Score = 935 bits (506), Expect = 0.0 Identities = 727/835 (87%), Gaps = 9/835 (1%) Strand=Plus/Plus Query 36 TTTTAC-TTGCGCCACACTCTCACCGCAATGGCCGCCTCGACAATGGCTCTCTCCTCTCC 94 |||||| ||| || |||||| ||| ||||||||||||| || |||||||||||||| || Sbjct 37 TTTTACTTTGTGCTACACTC-AACCTCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCC 95 Query 95 TG-CTTTGACCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAGTATTTGGAACCG 153 || ||| | ||||||||||||| ||||| ||||| ||||| || || || |||||| || Sbjct 96 TGCCTTCG-CCGGAAAGGCCGTCAAGCTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCG 154 Query 154 GCCGAATCACCATGCGCAAAG-C--CT-CCAAGCCCACCGGTCCATCCGGCAGCCCATGG 209 |||| | || ||| | ||| | || ||||||| | || ||||| |||||||||||| Sbjct 155 GCCGTGTGACAATGAG-GAAGACAACTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGG 213 Query 210 TACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTC 269 |||||||| ||||| |||||||||||||| |||||||| || ||||| ||||||||||| Sbjct 214 TACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCGAGCTACCTT 273 Query 270 ACTGGAGAGTTCCCCGGTGATTACGGGTGGGACACTGCCGGTCTATCCGCCGATCCCGAG 329 || |||||||||||||| || ||||| |||||||| ||||| || || ||||| |||||| Sbjct 274 ACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCCGGACTCTCAGCCGACCCCGAG 333 Query 330 ACCTTCGCTAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCTCGGAGCC 389 || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 334 ACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCC 393 Query 390 CTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTT 449 ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || ||| Sbjct 394 CTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTT 453 Query 450 TGGTTCAAGGCTGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGGGCAACCCG 509 ||||||||||| || || |||||||||||||| ||||| | || |||||||| ||||| Sbjct 454 TGGTTCAAGGCCGGCTCTCAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCT 513 Query 510 AGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCCTCATGGGA 569 |||||||||||||||||||||||||| || |||||||| |||||||||||| | |||||| Sbjct 514 AGCTTGGTCCACGCTCAGAGCATCTTGGCGATTTGGGCCACTCAAGTTATCTTGATGGGA 573 Query 570 GCTGTTGAGGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGGACTTGCTT 629 || ||||| |||||||||||||| ||| |||| ||||||||||| || |||||||||||| Sbjct 574 GCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTT 633 Query 630 TACCCAGGTGGGAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGCTTTCGCGGAG 689 ||||| ||||| ||||||||||||||||| | ||||| ||||| ||||| ||||| ||| Sbjct 634 TACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTACCGACCCAGAGGCCTTCGCTGAG 693 Query 690 TTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTC 749 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 694 TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTC 753 Query 750 GTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAACCTCGCGGACCACTTGGCTGAT 809 ||||| ||||||||||| || ||||||||| | |||||||| || ||||| ||||| ||| Sbjct 754 GTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTTGGCCGAT 813 Query 810 CCAGTCAACAACAATGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAGTGAG 864 ||||| | |||||| |||||||||||||| |||||||| || ||||||||||||| Sbjct 814 CCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTGAG 868 > Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 Length=1008 Score = 928 bits (502), Expect = 0.0 Identities = 708/809 (88%), Gaps = 7/809 (1%) Strand=Plus/Plus Query 61 CAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTTTGACCGGAAAGGCCGTTAAG 119 ||||||||||||| ||||||||||||||||| |||| ||| | |||||||||| || || Sbjct 51 CAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCG-CCGGAAAGGCTGTGAAC 109 Query 120 CTATCCCCGGCGGCCTCCGAAGTATTTGGAACCGGCCGAATCACCATGCGCAAAG-C--C 176 || ||||| ||||| || ||||| |||||| |||||| | || ||| | ||| | Sbjct 110 CTTTCCCCCGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAG-GAAGACTGT 168 Query 177 T-CCAAGCCCACCGGTCCATCCGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTT 235 | ||||||| | |||||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct 169 TGCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTT 228 Query 236 GGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAGTTCCCCGGTGATTACGG 295 ||| |||||||| || ||||| ||||||||||| || |||||||||||||| || ||||| Sbjct 229 GGGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGG 288 Query 296 GTGGGACACTGCCGGTCTATCCGCCGATCCCGAGACCTTCGCTAGGAACCGTGAGCTAGA 355 |||||||| ||||| || || ||||| |||||||| ||||| ||||||||||||||||| Sbjct 289 ATGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGA 348 Query 356 AGTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATT 415 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 349 AGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTT 408 Query 416 GGCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTT 475 ||| ||||||||||| ||||||||||| || |||||||||||||| |||||||||||||| Sbjct 409 GGCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTT 468 Query 476 CAGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTT 535 |||||| ||||| | || |||||||| ||||| ||||| |||||||||||||||||||| Sbjct 469 CAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTT 528 Query 536 AGCCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGG 595 || |||||||| |||||||||||| | |||||||| ||||| |||||||||||||| || Sbjct 529 GGCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGG 588 Query 596 AGATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGGAGCTTCGACCCATT 655 | |||| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| Sbjct 589 AAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATT 648 Query 656 GGGCCTCGCTACTGACCCCGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGG 715 ||| | ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct 649 GGGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGG 708 Query 716 AAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGG 775 ||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 709 AAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGG 768 Query 776 ACCGTTGGAGAACCTCGCGGACCACTTGGCTGATCCAGTCAACAACAATGCATGGGCCTT 835 |||| | |||||||| || ||||| ||||| |||||||| | |||||| ||||||||||| Sbjct 769 ACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTT 828 Query 836 CGCTACCAACTTCGTCCCCGGAAAGTGAG 864 ||| |||||||| || ||||||||||||| Sbjct 829 CGCCACCAACTTTGTTCCCGGAAAGTGAG 857 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37474827411 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5