BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34460.1
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482407 jgi|Araly1|482407|fgenesh2_kg.4__1467__AT2G34460.1 1631 0.0
Ahg901275 jgi|Araly1|901275|Al_scaffold_0004_1925 104 1e-21
> Ahg482407 jgi|Araly1|482407|fgenesh2_kg.4__1467__AT2G34460.1
Length=1121
Score = 1631 bits (883), Expect = 0.0
Identities = 1052/1127 (93%), Gaps = 37/1127 (3%)
Strand=Plus/Plus
Query 1 CGTTTGTGGCAGAGAGGTTACACATCGATGGCAACATCTTTGCTTCTCAGACATTCCTCA 60
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 CGTTTGTGGCAGAGAAGTTACACATCGATGGCAACATCTCTGCTTCTCAGACATTCCTCA 60
Query 61 GCTGTCTTCTTCTCTCAGTCTTCCTTC---TTCACCAAGAACAAATCTTTTCGCTCCTT- 116
||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 61 GCTGTCTTCTTCTCTCAGTCTTCCTTCTTTTTCACCAAGAACAGCTCTTTTCGTTCCTTC 120
Query 117 TACTTCCATCAAAATGGAAAAAGGTGAAGC-A--G-AG----A-ATGCAGTGAAGAC-A- 165
| |||||||||||||||||| ||||||||| | | || | ||||||||||||| |
Sbjct 121 T-CTTCCATCAAAATGGAAAGAGGTGAAGCAAGTGAAGAAAAAGATGCAGTGAAGACGAC 179
Query 166 -AAGAAGGTGTTTGTCGCAGGAGCAACTGGACAAACCGGGAAGAGGATTGTGGAGCAGTT 224
||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 180 GAAGAAGGTGTTTGTCGCCGGAGCCACTGGACAAACGGGGAAAAGGATTGTGGAGCAGTT 239
Query 225 GTTGTCCCGTGGCTTTGCCGTCAAAGCTGGTGTTCGTGATGTAGAGAAAGCAAAAACATC 284
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GTTGTCCCGTGGCTTTGCCGTCAAAGCTGGTGTTCGTGATGTAGAGAAAGCTAAAACATC 299
Query 285 TTTCAAAGACGACCCGTCTCTTCAGATAGTTAGAGCAGACGTGACAGAAGGTCCTGATAA 344
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 TTTCAAAGACGACCCGTCTCTTCAGATCGTTAGAGCAGACGTGACAGAAGGTCCTGATAA 359
Query 345 GCTAGCTGAAGTTATAGGTGATGATTCTCAAGCTGTGATTTGTGCTACTGGGTTTCGTCC 404
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCTAGCTGAAGCTATAGGTGATGATTCTCAAGCTGTGATTTGTGCTACTGGGTTTCGTCC 419
Query 405 CGGATTTGATATATTCACTCCTTGGAAAGTCGATAATTTCGGGACAGTGAATCTTGTGGA 464
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 420 GGGGTTTGATATATTCACTCCTTGGAAAGTCGATAATTTTGGGACGGTGAATCTTGTGGA 479
Query 465 TGCTTGCCGTAAACAAGGAGTGGAAAAGTTTGTTCTTGTAAGCTCCATCTTGGTGAATGG 524
||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||
Sbjct 480 TGCTTGCCGTAAACAAGGAGTGGAAAAGTTTGTTCTTATAAGCTCAATCTTGGTTAATGG 539
Query 525 AGCTGCCATGGGACAGATACTGAACCCTGCTTACCTCTTCCTCAACCTCTTTGGACTAAC 584
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 AGCTGCAATGGGACAGATACTGAACCCTGCTTACATCTTCCTCAACCTCTTTGGACTAAC 599
Query 585 TCTTGTCGCTAAGCTTCAAGCCGAGAAGTATATCAAAAAATCTGGCATCAACTATACTAT 644
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 600 TCTTGTCGCTAAGCTTCAAGCCGAGAAGTATATCAGAAGATCTGGCATCAACTATACTAT 659
Query 645 AGTAAGGCCTGGTGGTCTTAAAAACGATCCTCCAACTGGAAATGTTGTCATGGAGCCAGA 704
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 660 AGTAAGGCCTGGTGGTCTTAAAAACGATCCTCCAACCGGAAATGTAGTCATGGAGCCAGA 719
Query 705 GGATACTCTATATGAAGGGAGTATATCGAGAGACCTGGTCGCAGAAGTTGCAGTGGAAGC 764
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGATACTCTGTATGAAGGGAGCATATCGAGAGACCTGGTCGCAGAAGTTGCAGTGGAAGC 779
Query 765 TTTACTTCAAGAGGAATCATCTTTCAAGGTTGTGGAGATAGTTGCTCGTGCCGAAGCTCC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTTACTTCAAGAGGAATCATCTTTCAAGGTTGTGGAGATAGTTGCTCGTGCCGAAGCTCC 839
Query 825 AAAACGTTCCTACAAAGATCTATTTGCCTCTGTTAAAGGACAATAA--A-----C---T- 873
||||||||||||||||||||||||||| |||||||||||||||||| | | |
Sbjct 840 AAAACGTTCCTACAAAGATCTATTTGCTTCTGTTAAAGGACAATAACTAGAATACAAATC 899
Query 874 A----GAATGTAATGAGTCTCATGCTCAAACCTTTTATTTCTCTTATGTCTTGAGTACAA 929
| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 900 AATCAGAATGTAATGAGTCTCATGCTCAAAACTTTTATTTCTCTTATGTCTTGCGTACAA 959
Query 930 CAAACAGATTACATAGACTTTTGCGCATAAATTGAGTTCAAGATAAGTATTGAAAGAGTT 989
||||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 960 CAAACAGAT-ACATAAACTTTTGCGAATAAACCGAGTTCAAGATAAGTATTGAAAGAGTT 1018
Query 990 CCATTCAGTTTCATATCTTATCCATTTTGGGTCTTAAGAACCCCATCATCACTGGCGCTT 1049
|||||||||||||| |||||||||||||||||||||||| ||| |||| | ||||||||
Sbjct 1019 CCATTCAGTTTCATCTCTTATCCATTTTGGGTCTTAAGAGCCC-ATCA-C--TGGCGCTT 1074
Query 1050 CTTCCCGGTCGCATGTTCCCATGAGTGCATGACATGGTTCACGATTT 1096
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTTCCCAGTCGCATGTTCCCATGAGTGCATGACATGGTTCACGATTT 1121
> Ahg901275 jgi|Araly1|901275|Al_scaffold_0004_1925
Length=837
Score = 104 bits (56), Expect = 1e-21
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 1038 TCACTGGCGCTTCTTCCCGGTCGCATGTTCCCATGAGTGCATGACATGGTTCACGATTT 1096
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCACTGGCGCTTCTTCCCAGTCGCATGTTCCCATGAGTGCATGACATGGTTCACGATTT 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40829644107
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5