BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34650.1 Length=1722 Score E Sequences producing significant alignments: (Bits) Value Ahg321182 jgi|Araly1|321182|fgenesh1_pm.C_scaffold_4001239 2069 0.0 > Ahg321182 jgi|Araly1|321182|fgenesh1_pm.C_scaffold_4001239 Length=1326 Score = 2069 bits (1120), Expect = 0.0 Identities = 1261/1328 (95%), Gaps = 13/1328 (1%) Strand=Plus/Plus Query 232 ATGTTACGAGAATCAGACGGTGAGATGAGTTTAGGAACAACAAACTCACCGATAAGCAGC 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTTACGAGAATCAGACGGTGAGATGAGTTTAGGAACAACAAACTCACCGATAAGCAGC 60 Query 292 GGAACAGAGAGTTGCAGCAGTTTCAGCCGGTTATCATTCGACGCGCCGCCGTC-A--A-- 346 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | Sbjct 61 GGAACAGAGAGTTGCAGTAGTTTCAGCCGGTTATCATTCGACGCGCCGCCGTCAACCACC 120 Query 347 -C---TATCCCCGAAGAAGAAAGCTTCCTTTCTCTCAAACCTCACCGATCCTCAGATTTC 402 | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 GCGATTATCCCCGAAGAAGAAAGCTTCCTATCTCTCAAACCTCACCGATCCTCAGATTTC 180 Query 403 GCTTACGCAGAGATCCGAAGACGaaaaaaaCAAGGCCTAACCTTCCGAGATTTTCGCCTC 462 |||||||||||||||||| ||||||||||||| || ||||| |||||||||||||||||| Sbjct 181 GCTTACGCAGAGATCCGACGACGAAAAAAACACGGTCTAACTTTCCGAGATTTTCGCCTC 240 Query 463 ATGCGTCGTATCGGCGCCGGCGACATCGGAACAGTTTACTTATGCCGTCTAGCCGGAGAC 522 |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct 241 ATGCGTCGTATCGGCGCCGGAGACATCGGAACAGTTTACTTATGTCGTCTCGCCGGAGAC 300 Query 523 GAAGAAGAGAGCCGGAGCTCGTATTTTGCGATGAAAGTTGTGGATAAAGAAGCTCTTGCG 582 ||||||||||||||||| |||||||| || |||||||| |||||||||||||| |||||| Sbjct 301 GAAGAAGAGAGCCGGAGTTCGTATTTCGCTATGAAAGTCGTGGATAAAGAAGCGCTTGCG 360 Query 583 TTGAAGAAGAAGATGCATAGAGCAGAGATGGAGAAAACGATTTTGAAAATGCTTGACCAT 642 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 TTGAAGAAGAAGATGCATAGAGCAGAGATGGAGAAAACGATCTTGAAAATGCTTGACCAT 420 Query 643 CCATTTTTGCCGACTCTTTACGCTGAGTTTGAAGCCTCACATTTCTCTTGCATCGTTATG 702 || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 421 CCTTTTTTGCCGACCCTTTACGCTGAGTTTGAAGCGTCACATTTCTCTTGCATCGTTATG 480 Query 703 GAATATTGCTCCGGTGGTGATTTACACTCTCTCCGTCATAGACAACCTCA-CCGGCGATT 761 || ||||||||||| ||||||||||||||||||||||||||||| ||| | |||| |||| Sbjct 481 GAGTATTGCTCCGGCGGTGATTTACACTCTCTCCGTCATAGACAGCCT-ACCCGGAGATT 539 Query 762 CTCCCTCTCTTCCGCCAGATTTTATGCCGCCGAAGTTCTAGTGGCGTTAGAATATCTACA 821 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 540 TTCCCTCTCATCCGCCAGATTTTATGCCGCCGAAGTTCTAGTGGCGTTAGAATATTTACA 599 Query 822 CATGTTGGGTATCATCTACAGAGATCTGAAGCCTGAAAATATCTTAGTTAGATCCGACGG 881 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 600 CATGTTGGGTATCATCTACAGAGATCTGAAGCCTGAAAATATCTTAGTTAGATCGGACGG 659 Query 882 TCACATTATGCTCTCTGACTTTGACCTCT-CTCTATGCTCCGACTCAATCGCAGCCGTTG 940 ||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||| Sbjct 660 TCACATTATGCTCTCGGACTTTGACCTCTCCT-TATGCTCCGACTCAATCGCAGCCGTTG 718 Query 941 AATCTTCCTCGTCTTCGCCGGAGAATCAACAACTCCGTTCACCGCGACGATTCACTCGTC 1000 ||||| |||| || |||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 719 AATCTACCTCATCGTCGCCGGAGAATCACCAACTCCGTTCACCGCGACGACTCACTCGTC 778 Query 1001 TCGCTAGACTTTTCCAACGAGTCTTGCGGTCTAAAAAGGTTCAGACTTTAGAACCAACCC 1060 | |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || Sbjct 779 TGGCTAGACTTTTCCACCGAGTCATGCGGTCTAAAAAGGTTCAGACTTTAGAACCAAACC 838 Query 1061 GTCTCTTTGTTGCTGAACCGGTTACTGCCCGGTCCGGTTCGTTCGTTGGTACGCATGAAT 1120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 839 GTCTCTTTGTTGCTGAACCGGTTACCGCCCGGTCCGGTTCGTTCGTTGGTACGCATGAGT 898 Query 1121 ACGTGGCACCAGAAGTTGCTTCAGGTGGATCACATGGTAATGCCGTTGACTGGTGGGCCT 1180 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 ACGTGGCACCAGAAGTAGCTTCAGGTGGATCACATGGTAATGCCGTTGACTGGTGGGCCT 958 Query 1181 TTGGAGTGTTTCTCTACGAGATGATATATGGCAAGACTCCGTTCGTTGCGCCGACTAATG 1240 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 959 TTGGAGTGTTTCTCTACGAGATGATATACGGCAAGACTCCGTTCGTTGCGCCGACTAATG 1018 Query 1241 ACGTCATTCTCCGTAACATTGTGAAAAGACAGTTGAGTTTCCCGACTGATTCGCCGGCGA 1300 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 ACGTCATCCTCCGTAACATTGTGAAAAGACAGTTGAGTTTCCCGACTGATTCGCCGGCGA 1078 Query 1301 CTATGTTTGAGCTTCATGCGCGGAATTTGATTTCCGGGTTGCTTAACAAAGATCCGACTA 1360 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 1079 CTATGTTTGAGCTTCACGCGCGGAATTTGATTTCCGGGTTGCTTACCAAAGATCCGACTA 1138 Query 1361 AAAGACTTGGGTCACGGCGAGGTGCGGCGGAGGTTAAAGTGCATCCTTTTTTCAAAGGTC 1420 ||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 1139 AAAGACTCGGGTCTCGGCGTGGTGCGGCGGAGGTTAAAGTACATCCTTTTTTCAAAGGTC 1198 Query 1421 TAAACTTTGCGCTCATTCGTACGCTTACTCCGCCGGAGATTCCTTCTTCCGTCGTCAAGA 1480 |||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1199 TAAATTTTGCGCTCATACGTACACTTACTCCGCCGGAGATTCCTTCGTCCGTCGTCAAGA 1258 Query 1481 AGCCGATGAAATCGGCGACGTTTAGTGGTAGAAGTAGTAACAAACCAGCGGCGTTCGATT 1540 |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 1259 AGCCGATGAAATCGGCGACGTTCGGTGGTAGGAGTAGTAACAAACCAGCGGCGTTCGATT 1318 Query 1541 ACTTTTGA 1548 |||||||| Sbjct 1319 ACTTTTGA 1326 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64601055520 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5