BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34720.1
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482436 jgi|Araly1|482436|fgenesh2_kg.4__1496__AT2G34720.1 1502 0.0
Ahg887546 jgi|Araly1|887546|Al_scaffold_0481_2 815 0.0
Ahg473278 jgi|Araly1|473278|fgenesh2_kg.1__3232__AT1G30500.2 311 7e-84
> Ahg482436 jgi|Araly1|482436|fgenesh2_kg.4__1496__AT2G34720.1
Length=968
Score = 1502 bits (813), Expect = 0.0
Identities = 920/970 (95%), Gaps = 14/970 (1%)
Strand=Plus/Plus
Query 1 AACAATTTTCTGAGGGTAAGATCCAGAGATTGATTGAATCAGCTTACTA-TTTTATATAA 59
||| |||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 1 AACGATTTTCTGAGGGTAAGATCCAGAGATTGATTGAATCAGCTTAATACTTTT-TATAA 59
Query 60 TTCAGTTTGTTGTTCCTCAGACTTGTAACTAGGACAGTCTTCTCATGAATCATGACTTCT 119
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCAGTTTATTGTTACTCAGACTTGTAACTAGGACAGTCTTCTCATGAATCATGACTTCT 119
Query 120 TCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGCGAAGAAAGAACGTCCAGATTCC 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 TCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGGGAAGAAAGAACGTCCAGATTCC 179
Query 180 CAAACCCGACCACAGGTTCCTTCAGGACGAAGTTCGGAATCTATTGATACAA-A--CTCT 236
||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 180 CAAACAAGACCACAGATTCCTTCAGGACGAAGTTCGGAATCTATTGATACAACAAACTCT 239
Query 237 GTCTACTCAGAGCCCATGGCACATGGATTATACCCGTATCCAGATCCTTACTACAGAAGC 296
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 GTCTACTCAGAGCCCATGGCACATGGGCTATACCCGTATCCAGATCCTTACTACAGAAGC 299
Query 297 GTCTTTGCACAGCAAGCGTATCTTCCACATCCCTATCCTGGGGTCCAATTGCAGTTAATG 356
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCTTTTCACAGCAAGCATATCTTCCACATCCCTATCCTGGGGTCCAATTGCAGTTAATG 359
Query 357 GGAATGCAGCAGCCAGGAGTTCCATTGCAATGTGATGCAGTCGAGGAACCTGTTTTTGTT 416
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 GGAATGCAACAGCCAGGAGTTCCATTGCAATGCGATGCAGTCGAGGAACCTGTTTTTGTT 419
Query 417 AACGCAAAGCAATACCATGGTATACTCAGGCGCAGGCAATCCCGGGCAAAACTTGAGGCA 476
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACGCAAAGCAATACCACGGTATACTCAGGCGCAGGCAATCCCGGGCAAAACTTGAGGCA 479
Query 477 CGAAATAGAGCCATCAAAGCAAAAAAGCCATACATGCATGAATCTCGGCATTTACATGCG 536
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 CGAAACAGAGCCATCAAGGCAAAGAAGCCATACATGCATGAATCTCGGCATTTACATGCG 539
Query 537 ATAAGACGGCCAAGAGGATGTGGTGGCCGGTTTCTCAATGCCAAGAAGGAAAATGGAGAC 596
||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 540 ATAAGACGGCCAAGAGGATGTGGCGGACGGTTTCTCAATGCCAAGAAGAAAAATGGAGAC 599
Query 597 CACAAGGAGGAGGAGGAGGC-A-A-CCTCTGATGAGAACACTTCAGAAGCAAGTTCCAGC 653
||||||||||| ||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 600 CACAAGGAGGAAGAGGAGGAGACAGCCTCTGATGAGAACACTTCAGAAGCAAGTTCCAGC 659
Query 654 CTCAGGTCCGAGAAATTAGCTATGGCTACTTCTGGTCCTAATGGTAGATCTTGAGGAAGG 713
|||||||| |||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 660 CTCAGGTCTGAGAAAGTAGCCATGGCTGCTTCTGGTCCTAATGGTAGATCTTGAGGAAGG 719
Query 714 TTTCTGCACAACCACAAGTTTAGTTTCTATTTTGGGTGGATGTT---CTCAGGGCATCAT 770
|| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct 720 TTCCTGCACAACCACAAGTTTAGTGTCTATTTTGGGTGGATGTTTGTCTCAGAGCATCAT 779
Query 771 CGTCTTTAGTGTTTTTGGATACGCTGTGTACAGGTTATTTGCTAGGGTAAACTTTGTTTT 830
|||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||
Sbjct 780 CGTCTTTAGTGTTTTTGGATACTCTGTGTATAGGTTATTTGCTAGGGTAA-CTTTGTTTT 838
Query 831 AGCGATTAGAAATAAAACTAAGCAAAGAAATGAAAAGTGTGATTGGAAGTATTGTTGTAC 890
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 839 AGTGATTAGAAATAAAACTAAGCAAAGAAATGAAAAGTGTGGTTGAAAGTATTGTTGTAC 898
Query 891 CAAATTGATATTCTTTGCCAATGAACTCAT--GTTTTGGAAAGTAAATTAATGTTCTTAG 948
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 CAAATTGATATTCTTTGCCAATGAACTCATATGTTTTGGAAAGTAAATTAATGTTCTTAG 958
Query 949 CTTTGTTTGC 958
||||||||||
Sbjct 959 CTTTGTTTGC 968
> Ahg887546 jgi|Araly1|887546|Al_scaffold_0481_2
Length=519
Score = 815 bits (441), Expect = 0.0
Identities = 494/519 (95%), Gaps = 6/519 (1%)
Strand=Plus/Plus
Query 111 ATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGCGAAGAAAGAACGT 170
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGGGAAGAAAGAACGT 60
Query 171 CCAGATTCCCAAACCCGACCACAGGTTCCTTCAGGACGAAGTTCGGAATCTATTGAT--- 227
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CCAGATTCCCAAACAAGACCACAGATTCCTTCAGGACGAAGTTCGGAATCTATTGATACA 120
Query 228 ACAAACTCTGTCTACTCAGAGCCCATGGCACATGGATTATACCCGTATCCAGATCCTTAC 287
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 ACAAACTCTGTCTACTCAGAGCCCATGGCACATGGGCTATACCCGTATCCAGATCCTTAC 180
Query 288 TACAGAAGCGTCTTTGCACAGCAAGCGTATCTTCCACATCCCTATCCTGGGGTCCAATTG 347
||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TACAGAAGCATCTTTTCACAGCAAGCATATCTTCCACATCCCTATCCTGGGGTCCAATTG 240
Query 348 CAGTTAATGGGAATGCAGCAGCCAGGAGTTCCATTGCAATGTGATGCAGTCGAGGAACCT 407
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CAGTTAATGGGAATGCAACAGCCAGGAGTTCCATTGCAATGCGATGCAGTCGAGGAACCT 300
Query 408 GTTTTTGTTAACGCAAAGCAATACCATGGTATACTCAGGCGCAGGCAATCCCGGGCAAAA 467
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GTTTTTGTTAACGCAAAGCAATACCACGGTATACTCAGGCGCAGGCAATCCCGGGCAAAA 360
Query 468 CTTGAGGCACGAAATAGAGCCATCAAAGCAAAAAAGCCATACATGCATGAATCTCGGCAT 527
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 361 CTTGAGGCACGAAACAGAGCCATCAAGGCAAAGAAGCCATACATGCATGAATCTCGGCAT 420
Query 528 TTACATGCGATAAGACGGCCAAGAGGATGTGGTGGCCGGTTTCTCAATGCCAAGAAGGAA 587
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 421 TTACATGCGATAAGACGGCCAAGAGGATGTGGCGGACGGTTTCTCAATGCCAAGAAGAAA 480
Query 588 AATGGAGACCACAAGGAGGAGGAGGAGG---CAACCTCT 623
|||||||||||||||||||| ||||||| ||||||||
Sbjct 481 AATGGAGACCACAAGGAGGAAGAGGAGGAGACAACCTCT 519
> Ahg473278 jgi|Araly1|473278|fgenesh2_kg.1__3232__AT1G30500.2
Length=945
Score = 311 bits (168), Expect = 7e-84
Identities = 401/508 (79%), Gaps = 38/508 (7%)
Strand=Plus/Plus
Query 101 CTCATGAATCATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGCGAA 160
||||||| |||||||||||||| | |||||||| |||||||||| || |||||||| |||
Sbjct 76 CTCATGAGTCATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAA 135
Query 161 GAAAGAAC-GTCCAGATTCCCAAACCCGACCA-CAGGTTCCTTCAGGACGAAGTTCGGAA 218
| |||||| | |||||| || || |||| || ||||| | ||| ||| || |||
Sbjct 136 GCAAGAACAG-AGAGATTCTCATTTCCAACCACCA-ATTCCTCCTGGAAGAAATTATGAA 193
Query 219 TCTATTGATACAAACTCT-GTCTACTCAG-A---G--CC-C----A-T---GGCACATGG 262
|| || | ||| || | | |||||||| | | | || | | | ||||| |||
Sbjct 194 TCCATAGCTAC-AAGTTTAGTCTACTCGGAACCGGTTCCTCAAAAACTGAAGGCACCTGG 252
Query 263 ATTATACCCGTATCCAGATCCTTACTACAGAAGCGTCTTTGCACAGCAAGCGTATCTTCC 322
| ||| || |||||||||||||||||||||||| ||||||||| | || | |||
Sbjct 253 ACAATATCCATATCCAGATCCTTACTACAGAAGCATCTTTGCAC--C--GC----C-TCC 303
Query 323 ACATCCCTAT-CCTGGGGTCCAAT-TGCAGTTAATGGGAATGCAGCAGCCAGGAGTTCCA 380
||| || ||| || ||||| | || | ||||| |||||||||||||| | ||| |||||
Sbjct 304 ACAACCGTATACC-GGGGTAC-ATCTACAGTTGATGGGAATGCAGCAACAAGGTGTTCCT 361
Query 381 TTGCAATGTGATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCATGGTATA 440
|| | || ||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 362 TTACCATCTGATGCAGTTGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTATA 421
Query 441 CTCAGGCGCAGGCAATCCCGGGCAAAACTTGAGGCAC-GAAATAGAGCCATCAAAG-CAA 498
|| |||||||||||||| | |||| ||||||| | | ||| || || |||||| | ||
Sbjct 422 CTAAGGCGCAGGCAATCTAGAGCAAGACTTGAGTCTCAGAA-TAAAGTCATCAA-GTCAC 479
Query 499 AAAAGCCATACATGCATGAATCTCGGCATTTACATGCGATAAGACGGCCAAGAGGATGTG 558
|||||||| | |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 480 GTAAGCCATATTTACATGAATCACGGCATTTGCATGCGATAAGACGACCAAGAGGATGTG 539
Query 559 GTGGCCGGTTTCTCAATGCCAAGAAGGA 586
| || |||||||| ||||||||||||||
Sbjct 540 GCGGTCGGTTTCTAAATGCCAAGAAGGA 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35568681561
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5