BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34810.1
Length=1807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934080 jgi|Araly1|934080|scaffold_402068.1 2604 0.0
> Ahg934080 jgi|Araly1|934080|scaffold_402068.1
Length=1663
Score = 2604 bits (1410), Expect = 0.0
Identities = 1583/1667 (95%), Gaps = 10/1667 (1%)
Strand=Plus/Plus
Query 18 CACAAATAACAAAACGAAAATGAAGTTTTGGTCACGACCATTAACGTTTCTTATAATTAT 77
|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2 CACAAATAACAAAATGAAAATGAAGTTCTGGTCACGACC---AACGTTTCTTATAATTAT 58
Query 78 TATCTATCTCAT---AATTCAACAAGTCAACTCATCACCACCGTCATTATCTATACCGGA 134
|||||||||||| |||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 59 TATCTATCTCATAACAATTAAACGAGTCAACTCATCACCACCGTCATTATCTGTACCGGA 118
Query 135 GCATTTTCTCCGATGCCTCGACACTCAACCATCCGACCACGGCAGTCCCAACTCAAGAAC 194
||||||||||||||| ||||| ||||| || ||||||||||||||||||||||| | |||
Sbjct 119 GCATTTTCTCCGATGTCTCGATACTCAGCCGTCCGACCACGGCAGTCCCAACTCCATAAC 178
Query 195 CGCCGTGATCCCAACAAACTCATCTTTCTCAACAAACCTAATGAACGGCGTCAGAAACCT 254
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 179 CGCCGTGATCCCCACAAACTCATCTTTCTCAACAAATCTAATGAATGGCGTCAGAAACCT 238
Query 255 CCGGTTCGCTTCTGTCTCCACAAGAAAACCAGAAGTTATCGTCGCCGCCGTCACCGAAAC 314
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 239 CCGGTTCGCTTCTGCCTCCACAAGAAAACCAGAAGCCATCGTCGCCGCGGTCACCGAAAC 298
Query 315 TCACATAAGAGCAACAATCTCTTGCTGCAAACTCCTAAACCTCGAGCTAAGAATCCGAAG 374
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 299 CCACATAAGAGCAACAATCTCCTGCTGCAAACTCTTAAACCTCGAGCTAAGAATCCGTAG 358
Query 375 CGGAGGCCACGACTACGAAGGCTTCTCCTACACTTCTCCGGTACCTTTCGTAATCTTAGA 434
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 359 CGGTGGCCACGACTACGAAGGCTTCTCCTACACTTCTCCGGTACCATTCGTAATCTTAGA 418
Query 435 CATGTACAACTTCAACAAAATCGATATCAACATGAAAGACGAAACCGTTTGGATCCAATC 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CATGTACAACTTCAACAAAATCGATATCAACATGAAAGACGAAACCGTTTGGATCCAATC 478
Query 495 CGGAGCTTCACTAGGTCAGCTTTACTATAACATTGCAAGTAAAAGCAAAGTCCACGCTTT 554
|||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 479 CGGAGCCTCACTAGGTCAGCTTTACTACAACATTGCAAGCAAAAGCAAAGTCCACGCTTT 538
Query 555 TCCCGCCGGAGTTTGTCCTAAAGTCGGCGCCGGAGGACATTTCAGCGGCGGAGGATTCGG 614
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 TCCCGCCGGAGTTTGTCCTAAAGTCGGCGCCGGAGGACATTTTAGCGGCGGAGGATTCGG 598
Query 615 TAACCTCATGAGAAAATACGGTTTATCCATTGATCATATAATCGACGCTCAAATCATGGA 674
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 TAACCTCATGAGAAAATACGGTTTATCGATTGATCATATAATCGACGCTCAAATCATGGA 658
Query 675 CGCCAACGGTAAAGTGTACCGTAACCGTCAAGCTATGGGAGAAGACGTGTTTTGGGCTAT 734
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGCCAACGGTAAAGTCTACCGTAACCGTCAAGCTATGGGAGAAGACGTGTTTTGGGCTAT 718
Query 735 TCGCGGCGGAGGCGGCGGAAGCTACGGAGTCATTCTTGCCTGGAAGATAAAACTCGTTAG 794
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 719 TCGCGGCGGAGGCGGCGGAAGCTACGGCGTCATTCTTGCCTGGAAGATTAAGCTCGTTAG 778
Query 795 GGTTCCGGAGAAAGTCACAGTTTTTAAACTAGAAAGAACGGTGAGAGAAGGAGCCGTTGA 854
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 779 GGTTCCGGAGAAAGTCACAGTTTTTAAACTAGAAAGAACGGTGAGAGAAGGTGCCGTTGA 838
Query 855 TTTAGTTCATAAATGGCAACAAGTAGCTCCGGTTATCGACAGAGATTTGTTTATCCGGTT 914
|||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 TTTAGTCCATAAATGGCAAGAAGTAGCTCCGGTTATCGATAGAGATTTGTTTATCCGGTT 898
Query 915 AGAGATTAAACCAATAAACCGGAAAATCTCAAAAGGTAAGACGATTAAAGTCTCCTTCAT 974
|||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 899 AGAGATTAAACCGATAAACCGGAGAATCTCTAAAGGTAAGACGATCAAAGTCTCCTTCAT 958
Query 975 CGGAATGTTTCTTGGTTTACCTGAGAGACTT-TTAAACATAACGAAACAGAGTTTCCCTG 1033
|||||||||||||||||||| |||| |||| || |||||||| |||||||||||||| |
Sbjct 959 AGGAATGTTTCTTGGTTTACCAGAGAAACTTCTT-AACATAACAAAACAGAGTTTCCCGG 1017
Query 1034 AGCTACATTTAACGAAAGAAGATTGTATGGTCAAGAAATGGATCGAATCTA-GTGTTTTC 1092
||||||||||||||||| ||||||| ||||||||||||||||||| |||| | ||||||
Sbjct 1018 AGCTACATTTAACGAAATCAGATTGTGTGGTCAAGAAATGGATCGATTCTACG-GTTTTC 1076
Query 1093 TGGGCGAATTATCCAGAAAAAGCACCGATAGAGTTACTTCTCAAAAGAGTATCAACCAAC 1152
||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1077 TGGGCGAATTACCCAGAAAAAGCACCGATAGAGATACTTAACAAAAGAGTATCAACCAAT 1136
Query 1153 GAATACTACTGGAAACGTACTTCAGATTTTGTTCAAGCACCAATCTCAAAACAGGGTCTT 1212
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1137 GAATACTACTGGAAACGTACTTCAGATTTTGTTCAAACACCAATCTCAAAACAGGGTCTT 1196
Query 1213 GCAAAGATTTTTCAAACAATGATTGATCATTCGCCACTTCCACGACGAGTTTGGATGCAA 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GCAAAGATTTTTCAAACAATGATTGATCATTCGCCACTTCCACGACGAGTTTGGATGCAA 1256
Query 1273 TGGAATCCATGGGGAGGGAAAATGGCTGAGATAGCGTCTGATGCGACGGCGTTTGTGCAT 1332
|||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 1257 TGGAATGCATGGGGAGGGAAAATGGGGGAGATTGCGTCTGATGCGACGCCGTTTGTGCAT 1316
Query 1333 AGAGGTGGTAATGTTTTCATGATTGAGCATTTCATGAATTGGTATAGACCTGGAGATGAG 1392
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGAGGTGGTAACATTTTCATGATTGAGCATTTCATGAATTGGTATAGACCTGGAGATGAG 1376
Query 1393 CTTGAAGAGAAGTTCTTGGCGATTGCAAGAAGTTTTAAAGAAGCTATGGCTCCGTTTGTT 1452
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1377 CTTGAAGAGAAGTTCTTGGCGATTGCAAGAAGTTTTAAAGAAGCTATGGCTCCGTTCGTT 1436
Query 1453 TCCAAGAATCCGAGAGAAGCTTTCTTTAATTATAGAGATGTCGATATCGGAATTACTACG 1512
|||||||||||||||||||||||||||||||| |||| || |||||||||||||| |||
Sbjct 1437 TCCAAGAATCCGAGAGAAGCTTTCTTTAATTACCGAGACGTTGATATCGGAATTACGACG 1496
Query 1513 CCGGGGTATAATGCGACGTATGAAGGAGCTAAGGTTTATGGGGATAGTTATTTCAAAGGG 1572
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1497 CCGGGATATAACGCGACGTATGAAGGAGCTAAGGTTTATGGGGACAGTTATTTCAAAGGG 1556
Query 1573 AATTATTTGAGATTGGTTAAGATTAAAGCCCGGTTCGACCGGACTAATTTTTTCCGGTCT 1632
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AATTATTTGAGGTTGGTTAAGATTAAAGCCCGGTTCGACCGGACTAATTTTTTCCGGTCT 1616
Query 1633 CAGCAAGGGATTCCGGTTCTTGCTTAGTTTGGTGATTGGTGAGTGTT 1679
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 CAGCAAGGGATTCCGGTTCTTGCTTAGTTTGGTGATTGGTGAGTGTT 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67838726345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5