BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34960.1 Length=1925 Score E Sequences producing significant alignments: (Bits) Value Ahg482460 jgi|Araly1|482460|fgenesh2_kg.4__1520__AT2G34960.1 2933 0.0 > Ahg482460 jgi|Araly1|482460|fgenesh2_kg.4__1520__AT2G34960.1 Length=1841 Score = 2933 bits (1588), Expect = 0.0 Identities = 1760/1843 (95%), Gaps = 11/1843 (1%) Strand=Plus/Plus Query 71 agagagaatgga-aggtgaagagagaggatactggagatggagcaagagagaTTTCTTTC 129 |||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 AGAGAGAATGGATA-ATGAAGAGAGAGGATACTGGAGATGGAGCAAGAGTGATTTCTTTC 59 Query 130 CTGAGGAATCTTTCCAGAGCTTTGGTAGTTACAGAGCTGCTCTGTCTCAGACATGTTCCA 189 |||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 60 CTGAGGAATCTTTCCAGAGCTTCGGAAGTTACAGAGCTGCTCTGTCTCGGACATGTTCCA 119 Query 190 GGTTCAAGAACAGGTTGGTTAGTAGGTCTGATGATGAGAACGAGCGGTTTGAGCTCAAGA 249 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 120 GGTTCAAGAACAGGTTGGTTAGTAGGTCTGATGATGACAACGAGCGGTTTGAGCTCAAGA 179 Query 250 AACAGAGTGAGCACGAGATGAAACGGTGTTTGACATGGTGGGATTTAGTATGGTTTGGAT 309 ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 180 AACAGAGCGAGCACGAGATGAAACGGTGTTTGACGTGGTGGGATTTAGTCTGGTTTGGAT 239 Query 310 TCGGGTCGGTGATTGGAGCTGGAATCTTTGTCTTGACAGGTCAAGAAGCTCATGAGCAAG 369 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 240 TCGGCTCGGTGATTGGAGCTGGAATCTTTGTCCTGACAGGTCAAGAAGCTCATGAGCAAG 299 Query 370 CAGGACCAGCTATTGTCTTGTCTTATGTTGTTTCAGGTCTTTCTGCTATGCTCTCTGTCT 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CAGGACCAGCTATTGTCTTGTCTTATGTTGTTTCAGGTCTTTCTGCTATGCTCTCTGTCT 359 Query 430 TCTGCTACACGGAATTCGCTGTGGAAATCCCTGTGGCTGGTGGTTCTTTCGCCTATCTAC 489 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| Sbjct 360 TCTGCTACACGGAATTCGCTGTGGAAATCCCCGTGGCTGGTGGTTCCTTCGCCTATTTAC 419 Query 490 GGATTGAGCTTGGGGATTTTGCGGCGTTCATCACTGCAGGGAATATACTTCTTGAGAGTA 549 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 420 GGATTGAGCTTGGGGATTTCGCGGCGTTCATCACTGCAGGGAATATACTTCTTGAGAGTA 479 Query 550 TTGTTGGAACTGCAGCTGTTGCTAGAGCCTGGACTTCATATTTTGCAACTCTTCTGAATC 609 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TTGTTGGGACTGCAGCTGTTGCTAGAGCCTGGACTTCATATTTTGCAACTCTTCTGAATC 539 Query 610 GTAGCCCGAACGCTCTACGGATCAAAACAGATCTCAGTTCCGGTTTTAATCTCTTGGACC 669 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 540 GTAGCCCGAACGCTCTACGGATCAAAACAGATCTCAGTTCTGGTTTTAATCTCTTGGATC 599 Query 670 CAATAGCTGTTGTTGTTATAGCCGCTTCAGCTACAATTGCATCGATCAGCACAAGAAAGA 729 ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 600 CAATAGCTGTTGTGGTTATAGCCGCTTCAGCTACAATCGCATCGATCAGCACCCGAAAGA 659 Query 730 CTTCATTGCTCAACTGGATAGCTTCTGCTATCAACACTTTAGTGATATTTTTTGTTATAA 789 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 660 CTTCATTGCTCAACTGGATAGCTTCTGCTATCAACACTTTAGTGATATTTTTTGTGATAA 719 Query 790 TCGCTGGTTTTATCCACGCCGACACATCAAATTTGACTCCATTCTTGCCTTTTGGACCTG 849 | || |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 720 TTGCGGGTTTTATCCACGCCGACACATCAAATTTGACTCCATTCTTGCCTTATGGACCTG 779 Query 850 AGGGAGTGTTCCGAGCAGCTGCAGTTGTGTACTTTGCATATGGAGGATTTGATAGCATAG 909 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 780 AGGGAGTGTTCCGAGCAGCTGCAGTAGTGTACTTTGCATATGGAGGATTTGATAGCATAG 839 Query 910 CAACAATGGCTGAAGAAACCAAGAATCCATCAAGAGACATACCAATCGGGTTACTCGGTT 969 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 CAACAATGGCTGAAGAAACCAAGAATCCATCAAGAGACATACCAATCGGGTTACTCGGTT 899 Query 970 CAATGTCGATAATAACAGTGATATACTGCTTGATGGCATTATCCTTGAGTATGATGCAGA 1029 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 CAATGTCGATAATAACGGTGATATACTGCTTGATGGCATTATCCTTGAGTATGATGCAGA 959 Query 1030 AGTATACAGATATAGATCCAAATGCAGCTTACTCAGTAGCGTTTCAGAGCGTTGGAATGA 1089 |||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 960 AGTATACAGATATAGATCCAAACGCAGCTTACTCGGTAGCGTTTCAGAGTGTTGGAATGA 1019 Query 1090 AATGGGGAAAGTACTTGGTGGCACTTGGTGCTCTCAAAGGGATGACCACAGTTCTTTTAG 1149 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 AATGGGGAAAGTACCTGGTGGCACTTGGTGCTCTCAAAGGGATGACCACAGTTCTTTTAG 1079 Query 1150 TAGGAGCATTGGGACAAGCGAGATACGTTACTCACATCGCACGGACCCACATGATTCCGC 1209 |||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||| Sbjct 1080 TAGGAGCACTGGGACAAGCGCGATACGTCACTCACATTGCACGGACCCACATGATTCCGC 1139 Query 1210 CTATATTTGCCCTTGTCCATCCCAAAACAGGAACACCGATAAACGCTAACCTCCTAGTAG 1269 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 CTATATTTGCCCTCGTCCATCCCAAAACAGGAACACCGATAAACGCTAACCTCCTAGTAT 1199 Query 1270 CAATTCCAAGTGCTCTCATTGCTTTCTTTTCTGGTTTAGATGTTTTGGCAAGCCTCTTAT 1329 ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| Sbjct 1200 CAATTCCAAGTGCTCTCATCGCTTTCTTTTCGGGTTTAGATGTTTTGACAAGCCTCTTAT 1259 Query 1330 CGATAAGTACTCTCTTCATCTTCACAATGATGCCTATCGCACTACTCGTGAGGAGATACT 1389 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1260 CGATAAGTACTCTCTTCATCTTCACAATGATGCCTATCGCACTACTTGTGAGGAGATACT 1319 Query 1390 ACGTGAGACAAGATACTCCAAGAGTTCATCTCATTAAGCTCATCACTTGTCTCTTATTCG 1449 |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1320 ACGTGAGACAAGTTACTCCAAGATTTCATCTCATTAAGCTCATCATTTGTCTCTTATTCA 1379 Query 1450 TCGTTGTTTCTTCAATGGGTACTTCGGCGTATTGGGGAATGCAGCGCAAGGGATCATGGA 1509 | |||| |||||||||||| |||||||| |||||||||||||||| |||||||||||||| Sbjct 1380 TTGTTGCTTCTTCAATGGGGACTTCGGCTTATTGGGGAATGCAGCTCAAGGGATCATGGA 1439 Query 1510 TCGGTTACACAGTAACAGTTCCTTTCTGGTTCTTGGGAACTTTGGGGATCGTATTCTTTG 1569 |||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1440 TCGGATACACAATAACCGTTCCTTTCTGGTTCTTGGGAACTTTGGGGATTGTATTCTTTG 1499 Query 1570 TTCCTCAGCAACGAACACCGAAAGTGTGGGGCGTACCGTTAGTGCCATGGCTCCCGTGCT 1629 ||||||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||| Sbjct 1500 TTCCTCAGCAAAGAACACCGAAGGTGTGGGGCGTACCATTAGTCCCATGGCTCCCGTGCT 1559 Query 1630 TATCAATAGCAACAAACATCTTTCTCATGGGATCTTTGGGAGCAATGGCTTTTGTAAGGT 1689 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1560 TATCAATCGCAACAAACATCTTTCTGATGGGATCTTTGGGAGCAATGGCTTTTGTAAGGT 1619 Query 1690 TTGGTGTTTGCACTTTAGCCATGTTACTATACTATTTCCTGCTTGGTCTTCATGCAACAT 1749 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 TTGGGGTTTGCACTTTAGCCATGTTACTATACTATTTCCTGCTTGGTCTTCATGCAACAT 1679 Query 1750 TCGATATGGCTCATCAGCAAATTGTGCCAAGAACATAACAACTATGGAAAACAGAGAAGA 1809 |||||||||||||||||||||||||||||||| | ||| ||||||| ||||||| ||||| Sbjct 1680 TCGATATGGCTCATCAGCAAATTGTGCCAAGATCTTAATAACTATG-AAAACAGTGAAGA 1738 Query 1810 AATGTAACCTCTGAAAAGGTCTCTTCCTTCCACCCTAGTGTTATTCTGC-TT-T--CTT- 1864 |||||||||||| |||||||||||||||||||| ||||||||||||||| || | ||| Sbjct 1739 AATGTAACCTCTCAAAAGGTCTCTTCCTTCCACTCTAGTGTTATTCTGCATTCTAGCTTT 1798 Query 1865 C---ATGAACTGCTTCGTTCTGTATTCTCTGTAATCTGCAAAA 1904 | || |||||| |||||||| | |||||||||||||||||| Sbjct 1799 CTTCATCAACTGCATCGTTCTGGAATCTCTGTAATCTGCAAAA 1841 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72333375255 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5