BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35170.1
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482483 jgi|Araly1|482483|fgenesh2_kg.4__1543__AT2G35170.1 2689 0.0
Ahg890515 jgi|Araly1|890515|Al_scaffold_0007_2501 965 0.0
> Ahg482483 jgi|Araly1|482483|fgenesh2_kg.4__1543__AT2G35170.1
Length=1798
Score = 2689 bits (1456), Expect = 0.0
Identities = 1698/1811 (94%), Gaps = 32/1811 (2%)
Strand=Plus/Plus
Query 4 TTCTTCTTCTTCTTCGCGAAAACTTGGAAA-CTGTTTTAGGAACAAAAACCAGAGGCTTT 62
||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 1 TTCTTCTTCTTCTTCGCGAAAACTT-GAAAGCAGTTTTAGGAACAAAAACCAGAGGCTTT 59
Query 63 GATTTG-GAAAAAACCCTAATTTTCAACAACCCTAAA-TCCCCTACCATTTCTCCCCAAA 120
|||||| ||||||||||||||||||| ||||||||| || || ||||||||| | ||||
Sbjct 60 GATTTGAAAAAAAACCCTAATTTTCAAGAACCCTAAATTCACC-ACCATTTCTTCTCAAA 118
Query 121 TCCTCTTTCCAAGTTCCATACTCTTTATGTAAATGCATCTGAAGAAATCATCTGTAACAG 180
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 119 TCCTCTTTCCAAGTTCCATCCTTTTTATGTAAATGCATCTGAAGAAATCATCTGTAACAG 178
Query 181 AACGACGATTAATCGGGAAAGACGATTCCGATCCAAACCAAATCCCCAATCCGA-T---- 235
|||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
Sbjct 179 AACGACGATTAATCGGGAAAGACGATTCCGATCCAAACCATATCCCCGATCCGATTCACC 238
Query 236 -TCATCATCATCATCAG-ACCCAGAATAAAAATCGAACCGCCATTGATAATAAAGGCTCT 293
|||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||
Sbjct 239 ATCATCATCATCATCAGAACCC-GAATAAAACTCGAACCGCCATTG---ATAAAGGCTCT 294
Query 294 GGCTTCACTAAGTATAATCATCCCCAAGGTCAGAATCATCATCACACGGTTGATATCCCA 353
||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 295 GGCTTCACTGTGTACAATCACCCCCAAGGTCAGAGTCATCATCACACGGTTGATATCCCA 354
Query 354 ACCGGTGTTGACCATTTCCGACGAAGAAGCGCACGGGCACGATCAGGATCGATTTCTTCA 413
||||| ||||| |||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 355 ACCGGAGTTGATCATTTCCGACGAAGAAACGCACGGGCACGATTGGGATCGATATCTTCA 414
Query 414 TTTTTCCCATCAAATCTTTTGTCTTCTCTTTCTTCCTATCGTCCTGTGATTGCTCGGTTC 473
| ||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 415 TATTTCCCATCAAATCTTTTGTCTTTTCTTTCTTCGTATCGTCCCGTGATTGCTCGGTTC 474
Query 474 TTGAGGAAGCTTCTACGCTATACCCTTAGAGCCCGTTTGATTTGTTTCCATCTTCGTTTC 533
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 475 TTGAGGAAGCTTCTACGCTATACCCTTCGAGCCCGTTTGATTTGTTTCCATCTTCGTTTC 534
Query 534 TTGCTTCTTCTCGCTGTCCCTCCTTTATACATCTTCTTCCTTGTTATCAATCTTCGTATC 593
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 TTGCTTCTTCTTGCTGTCCCTCCTTTATACATCTTCTTCCTTGTGATCAATCTTCGTATC 594
Query 594 TTCCTTCGTCTAGTCTTTGTGATTATCGCTTTATCCTTCATCCTCTCGATCTCTCTCAGA 653
|| ||||||||| |||||| |||||||||| | || |||||||||||||||||||||| |
Sbjct 595 TTTCTTCGTCTAATCTTTGCGATTATCGCTCTGTCTTTCATCCTCTCGATCTCTCTCAAA 654
Query 654 TTCGCTCTTCCTCACTTAACATCAATTCGTCTTTTTGTCGCACGCTTGCTGACATTTATC 713
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 655 TTCGCTCTTCCTCACTTACCGTCAATTCGTCTTTTTGTCGCACGCTTGCTGACCTTTATC 714
Query 714 CCTGCCAGATTCTCTTCCTCTCAGCCGAG--C-ACTGACCGAGTTG-TTTGGTCCATTGG 769
||||||||||||||||||||||||||||| | ||| ||| || || |||||||||||||
Sbjct 715 CCTGCCAGATTCTCTTCCTCTCAGCCGAGCACTACTAACCAAG-TGATTTGGTCCATTGG 773
Query 770 GTCGAAGCCAGTTGCGGAGAATAATAAGACAAATTCAGGATCTTGGGTTCAGAAGTATGG 829
||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 774 GTCGAAGCCAGTTGCGGAG---AATAAGACCAATTCAGGATCTTGGGTTCAGAAGTTTGG 830
Query 830 CACTAATGATATGTATGAAGGAGAGTTTCATAGAGGAAAGTGTTCAGGAAGTGGAGTTTA 889
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CACTAATGATGTGTATGAAGGAGAGTTTCATAGAGGAAAGTGTTCAGGAAGTGGAGTTTA 890
Query 890 TTACTATTCTATGAAAGGCAAATACGAAGGAGAGTGGATTGATGGGAAATATGATGGTTA 949
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TTACTATTCCATGAAAGGCAAATACGAAGGAGAGTGGATTGATGGGAAATATGATGGTTA 950
Query 950 TGGAGTAGAAACATGGTCTAAAGGGAGTAGGTATCGAGGTCAATATAGGTTAGGTCTAAG 1009
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 951 TGGAGTAGAAACATGGGCTAAAGGAAGTAGGTATCGAGGTCAATATAGGTTAGGGCTAAG 1010
Query 1010 ACATGGAATTGGAGTTTATACGTTTTATACAGGAGATGTGTATGCTGGTGAATGGTCTAA 1069
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1011 ACATGGAATTGGAGTCTATACATTTTATACAGGAGATGTGTATGCTGGTGAGTGGTCTAA 1070
Query 1070 TGGGCAGTGCCATGGTTGTGGTGTATATACCTCTGAGGATGGAAGTAGATATGACGGAGA 1129
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1071 TGGCCAGTGCCATGGTTGTGGTGTATATACCTCTGAGGATGGAAGTAGATACGATGGAGA 1130
Query 1130 GTTCAAGTGGGGTGTCAAACATGGCCTTGGTAGTTACCATTTCAGAAATGGTGATGCGTA 1189
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1131 GTTCAAGTGGGGTGTCAAACATGGCCTTGGTAGTTACCATTTCAGAAATGGCGATGCATA 1190
Query 1190 TGCTGGGGAGTATTTTGCAGACAAGATGCATGGTTTTGGAGTGTATCACTTTGCGAACGG 1249
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TGCTGGGGAGTATTTTGCTGACAAGATGCATGGTTTTGGAGTGTATCACTTTGCGAACGG 1250
Query 1250 GCATAAGTATGAAGGAGCTTGGCACGAGGGAAGAAGGCAAGGGCTTGGTATGTATACTTT 1309
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1251 CCATAAGTATGAAGGAGCTTGGCACGAGGGAAGAAGGCAAGGGCTCGGTATGTACACTTT 1310
Query 1310 CAGGAATGGTGATACACAAGCCGGTCATTGGGAAGACGGTGTACTCAGTTGTCCTACCGA 1369
|||||||||||| || |||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 1311 CAGGAATGGTGAGACTCAAGCCGGACATTGGGAAGACGGTATACTCAGTTGTGCTACCGA 1370
Query 1370 GCAGACTATCCGTCCTGGATCATCTTTTACCATAAGCCATTCCAAAGTTGTTGATGCTGT 1429
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1371 GCAGACTATCCGTCCCGGATCATCTTTTACCATCAGCCATTCCAAAGTTGTTGATGCTGT 1430
Query 1430 TGAGCAAGCAAGGAAAGCAGCTGAGAAAGCACATGAAGTTGTGAAAGTGGAAGAGAGGAT 1489
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1431 TGAGCAAGCAAGGAAAGCAGCTGAGAAAGCGCATGAAGTTGTGAAAGTGGAAGAGAGGAT 1490
Query 1490 CAAGAGAGCGGTGATGGCTGCAAATAGAGCAGCGAATGCAGCTAGAGTAGCAGCCGTGAA 1549
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1491 CAAGAGAGCGGTGATGGCTGCAAATAGAGCAGCGAATGCGGCTAGAGTAGCAGCTGTGAA 1550
Query 1550 GGCTGTCCAATCCCAGACCTTTCACAGGAATGATGGCGATCTTGAAACCAATTGTTGAGC 1609
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1551 GGCTGTCCAATCCCAAACCTTTCACAGGAATGATGGTGATCTTGAAACCAAATGTTGAGC 1610
Query 1610 ATAGGTTAGAAGAGATCTTCCTTAACAGGTTTTCTTGTTCCT--TT-ATGAGCAAAGCTA 1666
|||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||
Sbjct 1611 ATAGGTTAGAAGAGATCTTCATTAACAGGTTTTCTTGTTCCTCCTTTATGAGCAAAGCTA 1670
Query 1667 GTTTGAAACTGTAGATAATAAACTAG-AGATGATCTTTGTATATCAACA-AGaaaaaaaT 1724
|||| ||||||||||||||||||||| ||| |||||||||| ||||||| | ||||||||
Sbjct 1671 GTTTTAAACTGTAGATAATAAACTAGGAGA-GATCTTTGTAAATCAACACA-AAAAAAAT 1728
Query 1725 TGGGTCTGCTTCATAGAATGCAACTGACATACATGTAGCCAAAAATCCCTATCTTGATTA 1784
||||||||||||||||| |||| |||||||| ||||||||||||||| |||||||||||
Sbjct 1729 -GGGTCTGCTTCATAGAAGGCAATTGACATACGTGTAGCCAAAAATCCATATCTTGATTA 1787
Query 1785 AACAATTAGAA 1795
|| ||||||||
Sbjct 1788 AAGAATTAGAA 1798
> Ahg890515 jgi|Araly1|890515|Al_scaffold_0007_2501
Length=1539
Score = 965 bits (522), Expect = 0.0
Identities = 931/1123 (83%), Gaps = 50/1123 (4%)
Strand=Plus/Plus
Query 479 GAAGCTTCTACGCT-ATACCCTTAGAGCCCGTTTGATTTGTTTCCATCTTCGTTTCTTGC 537
||||||||| || | || ||||||| ||||||||| |||||||||||||||||||| |
Sbjct 411 GAAGCTTCTCCG-TCATGTTCTTAGAGTCCGTTTGATATGTTTCCATCTTCGTTTCTTAC 469
Query 538 TTCTTCTCGCTGTCCCTCCTTTATACATCTTCTTCCTTGTT-ATCAATCTTC-GTA-TCT 594
|||||||| |||| |||||| | || ||||| || |||||| || | | ||| | | |||
Sbjct 470 TTCTTCTCTCTGTGCCTCCTCTCTATATCTT-TTTCTTGTTGATTAGT-TTCAG-ATTCT 526
Query 595 TCCTTCGTCTAGTCTTTGT-GATTATCGCTTTATCCTTCATCCTCTCGATCTCTCTC-AG 652
|||||| | | ||| || | ||| |||||||| || || |||| |||||||||||| ||
Sbjct 527 TCCTTCTTTTCGTC-TTCTCGATAATCGCTTTTTCTTTTGTCCTTTCGATCTCTCTCAAG 585
Query 653 ATTCGCTCTTCCTCACTTAACATCAATTCGTCTT-TTTGTCGCACGCTTGCTG----AC- 706
|||||||||||||||||| ||||||||||| || || |||| || |||||| |
Sbjct 586 -TTCGCTCTTCCTCACTTACCATCAATTCGT-TTGATTATCGCTCGATTGCTGTCCCTCA 643
Query 707 A-TTTATCCCTGCCAGAT--TC-TCTTCCTCTC-AGCCGAGCACTGACCGA-GTTGTTTG 760
| ||| |||| |||||| || || || |||| || ||||||| | | | ||||||||
Sbjct 644 AGCTTAGCCCTACCAGATCCTCGTCGTCGTCTCAAG-AGAGCACTAAAC-ATGTTGTTTG 701
Query 761 GTCCATTGGGTCGAAGCCAGTTG-CGGAGAATAATAAGACAAATTCAGGATCTTGGGTTC 819
||| |||||||||||||| | || | ||| || ||||| || || || || |||||||
Sbjct 702 GTCAATTGGGTCGAAGCCTG-TGACTGAG---AAGAAGACCAACTCTGGCTCATGGGTTC 757
Query 820 AGAAGTATGGCACTAATGATATGTATGAAGGAGAGTTTCATAGAGGAAAGTGTTCAGGAA 879
||||||| || || |||| | || || |||||||||||||| || |||||||||||||
Sbjct 758 AGAAGTACAGCTCTGGTGATGTATACGAGGGAGAGTTTCATAGGGGGAAGTGTTCAGGAA 817
Query 880 GTGGAGTTTATTACTATTCTATGAAAGGCAAATACGAAGGAGAGTGGATTGATGGGAAAT 939
||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||
Sbjct 818 GTGGAGTTTATTACTATTCTATGAAGGGTAAATACGAAGGGGATTGGATTGATGGGAAAT 877
Query 940 ATGATGGTTATGGAGTAGAAACATGGTCTAAAGGGAGTAGGTATCGAGGTCAATATAGGT 999
||||||| |||||||| ||||||||| ||||||| |||||||| ||||||||||| |||
Sbjct 878 ATGATGGATATGGAGTTGAAACATGGGCTAAAGGAAGTAGGTACCGAGGTCAATACAGGC 937
Query 1000 TAGGTCTAAGACATGGAATTGG-AGTTTATACG-TTTTATACAGGAGATGTGTATGCTGG 1057
||| | |||||||||| ||| | | |||| | ||||||||||| ||||| ||||||||
Sbjct 938 AAGGGATGAGACATGGAACTGGTA-TCTATA-GATTTTATACAGGGGATGTATATGCTGG 995
Query 1058 TGAATGGTCTAATGGGCAGTGCCATGGTTGTGGTGTATATACCTCTGAGGATGGAAGTAG 1117
||| ||||||||||| ||| ||||||| |||||||| ||||||||||||||||| ||| |
Sbjct 996 TGAGTGGTCTAATGGACAGAGCCATGGCTGTGGTGTGTATACCTCTGAGGATGGTAGTCG 1055
Query 1118 ATATGACGGAGAGTTCAAGTGGGGTGTCAAACATGGCCTTGGT-AGTTACCATTTCAGAA 1176
| || |||||||| || |||||||||||||||||||||||| | ||| ||||||||||
Sbjct 1056 TTTTGTTGGAGAGTTTAAATGGGGTGTCAAACATGGCCTTGGTCA-TTATCATTTCAGAA 1114
Query 1177 ATGGTGATGCGTATGCTGGGGAGTATTTTGCAGACAAGATGCATGGTTTTGGAGTGTATC 1236
|||||||| | |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1115 ATGGTGATACATATGCTGGAGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTGTATC 1174
Query 1237 ACTTTGCGAA-CGGGCATAAGTATGAAGGAGCTTGGCACGAGGGAAGAAGGCAAGGGCTT 1295
| |||| ||| ||||||| |||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 1175 AATTTG-GAAACGGGCATCGGTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGACTT 1233
Query 1296 GGTATGTATACTTTCAGGAATGGTGATACACAAGCCGGTCATTGGGAAGACGGTGTACTC 1355
|||||||| || |||||||||||||| ||||| || || ||||||||||| || || |||
Sbjct 1234 GGTATGTACACGTTCAGGAATGGTGAGACACAGGCAGGCCATTGGGAAGATGGAGTTCTC 1293
Query 1356 AGTTGTCCTACCGAGCAGACTA-TCCGTCCTGGAT-CATC-TTTTACCATAAGCCATTCC 1412
|| ||||||||||||||||| | || |||||| || |||| |||| |||| |||||||||
Sbjct 1294 AGCTGTCCTACCGAGCAGACCACTC-GTCCTG-ATTCATCGTTTT-CCATCAGCCATTCC 1350
Query 1413 AAAGTTGTTGATGCTGTTGAGCAAGCAAGGAAAGCAGCTGAGAAAGCACATGAAGTTGTG 1472
|| ||| | || |||| ||||||||||||||||||| |||||||||| |||||||||
Sbjct 1351 AAGGTTCTCGACACTGTCCAGCAAGCAAGGAAAGCAGCCGAGAAAGCACGTGAAGTTGTC 1410
Query 1473 AAAGTGGAAGAGAG-GATCAAGAGAGCGGTGATGG-CTGCAAATAGAGCAGCGAATGCAG 1530
||||| |||||||| | | || ||||| ||||||| | ||||| ||||||| ||||| |
Sbjct 1411 AAAGTTGAAGAGAGAG-TGAACAGAGCAGTGATGGTC-GCAAACCGAGCAGCAAATGCTG 1468
Query 1531 CTAGAGTAGCAGCCGTGAAGGCTGTCCAATCCCAGACCTTTCA 1573
||||||| || || |||||||||||| |||| || |||||
Sbjct 1469 CTAGAGTTGCTGCTACAAAGGCTGTCCAAACCCAAACATTTCA 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67724455610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5