BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35260.1 Length=1623 Score E Sequences producing significant alignments: (Bits) Value Ahg497524 jgi|Araly1|497524|fgenesh2_kg.716__1__AT2G35260.1 1834 0.0 Ahg901370 jgi|Araly1|901370|Al_scaffold_0004_2020 1626 0.0 Ahg934138 jgi|Araly1|934138|scaffold_402126.1 169 7e-41 > Ahg497524 jgi|Araly1|497524|fgenesh2_kg.716__1__AT2G35260.1 Length=1366 Score = 1834 bits (993), Expect = 0.0 Identities = 1291/1424 (91%), Gaps = 64/1424 (4%) Strand=Plus/Plus Query 1 ACAAGCACTTAGCAGAGCAAATGAAGAAGACGAAGCACACTGAGAATTCACCGGCCAGAG 60 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ACACGCACATAGCAGAGCAAATGAAGAAGACGAAGCACACTGAGAATTCACCGGTCAGAG 60 Query 61 ATCACCAATAAGT-GTTGTAG-TTTCCGGTTACTTCGAATAACCTTCAATGGAGCTTCCG 118 ||||| | | ||| || ||| |||||| |||| |||| |||||| ||||||||||||| Sbjct 61 ATCACGACTGAGTACTT-TAGTTTTCCGATTACCTCGAGCAACCTTAAATGGAGCTTCCG 119 Query 119 TTACTCTCGTATGCTAGCTCCGCGTCGTTTTCACGGACAGGCTTATGCTCTTCTTCTTCT 178 |||||||||||||||||||||||||||||||| ||||||||| | | | | | |||||| Sbjct 120 TTACTCTCGTATGCTAGCTCCGCGTCGTTTTCGCGGACAGGC-T-T--T-TAC-TCTTCT 173 Query 179 TCCTCCTCAACTAGTATCTATGAGTTTCCGGAGAGAAGACGGAG-TTTAAAATTGAGATT 237 || |||||||||||||||| |||||| ||||||||||||||||| || | || ||||||| Sbjct 174 TCTTCCTCAACTAGTATCTGTGAGTTCCCGGAGAGAAGACGGAGCTTCAGAA-TGAGATT 232 Query 238 CAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAGCAGTGAAGGGAT 297 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 233 CAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAGCAGCGAAGGGAT 292 Query 298 TGAGAAGACAACAGACACCGTCGGTGGCGGAGGAGGAGGAGGAGCAGGCAGATTTGCTGG 357 |||||| |||| | | ||| ||| | | | | |||||||||| Sbjct 293 CGAGAAG---ACAG--A----C---GGC---------GGA-G-G-A-G--GATTTGCTGG 325 Query 358 TACTGCCATGGAGGTTACTACACTTGATCGTGGTTTTGCTAACTCCACCACCGTTGATTT 417 ||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||| Sbjct 326 TACTGCCATGGAGGTGACAACACTTGATCGTGGATTCGCTAACTCCACCACCGTTGATTT 385 Query 418 TCCGATCTGGGACAAAATCGGCGCCGTCGTTAGACTTACTTATGGAATCGGAATATATGG 477 |||||||||||||||||| ||||||||||||||||||||||| |||||| | || Sbjct 386 TCCGATCTGGGACAAAATTGGCGCCGTCGTTAGACTTACTTACGGAATC-G------CGG 438 Query 478 AGCAATGGC-TGTAGCAGGAAGATTTATAT-GTTCAGTGACTGGAATTGATTCATCTGGT 535 || | | | || | |||||||| |||| |||| |||||||||||||||||||||||| Sbjct 439 AG---T--CAT-TA-CTGGAAGATTCATATGGTTCGGTGACTGGAATTGATTCATCTGGT 491 Query 536 GGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCTATGCAACACCACCAATC 595 |||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||| Sbjct 492 GGATTTGATCCTTCTCTTGACGCACTTCTCGCCGGACTTGGCTATGCAACACCACCAATC 551 Query 596 ATGGCTCTTCTCTTCATACTCGACGATGAAGTTGTGAAGCTATCACCGCATGCTCGGGCC 655 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 552 ATGGCTCTTCTCTTCATACTCGATGATGAAGTTGTGAAGCTATCACCGCACGCTCGGGCC 611 Query 656 ATTAGAGATGTGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG 715 |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct 612 ATTAGAGATGTGGAAGATGAGGAGCTCAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG 671 Query 716 TTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTA 775 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 672 TTTATACTCATTGTCGCGGCTAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTA 731 Query 776 CAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGC 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 732 CAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGC 791 Query 836 ATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTGAAGTCTTTGCAGCT 895 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 792 ATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTCAAGCCTTTGCAGCT 851 Query 896 GTAATCACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCCAAAAGACCCG 955 |||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 852 GTAATCACTGCCACTCTCACAGGCTCTCTCTACTTTCTTGCTGCTTCTCCAAAGGACCCG 911 Query 956 ACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCA 1015 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 912 ACATACATTGTTGCCCCGGTTTTAAGGTCACGCCGAGATGATTTTAAGAAGCTTTTGTCA 971 Query 1016 GCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGGACTCTTA 1075 |||||||| |||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct 972 GCTTGGTACGAGAAGAGACAGATGAAGAAGATTTACTCTCCCCTACTCGAAGGACTCTTA 1031 Query 1076 GCCCTCTATCTCGGTATTGAATGGGTTCAGACGGATAATATATTAGCACCGATGATGACG 1135 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1032 GCCCTCTATCTCGGTATTGAATGGGTTCAGACCGATAATATTTTAGCACCGATGATGACG 1091 Query 1136 CATGGTATATACTCGGCGGTCATATTAGGGCATGGGCTGTGGAAAATTCACGATCACCGG 1195 |||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1092 CATGGTATATACTCAGCAGTCATATTAGGACATGGGCTGTGGAAAATTCATGATCACCGG 1151 Query 1196 AGAAGGTTACGCCGGAGAATCGAACACATTAGATCGGAGGCCACGGATAAGTTGATTTAA 1255 ||||| ||||||||||||||||||| ||||||||||||||| || ||||||||||||||| Sbjct 1152 AGAAGATTACGCCGGAGAATCGAACGCATTAGATCGGAGGCTACCGATAAGTTGATTTAA 1211 Query 1256 ATCAAATATAGATGGTTTAATTGGTTGGGGGGTGGATTTGTGTGTAtttttttGGTATGG 1315 ||||| | |||||| ||||||| |||||| | |||||||||||||||||||||| ||||| Sbjct 1212 ATCAACTCTAGATG-TTTAATTAGTTGGGAG-TGGATTTGTGTGTATTTTTTTG-TATGG 1268 Query 1316 GGTCGTATAGTGATTAGGGAAATTAGCTAGGACCTCTTCCAATTAATTAGAGAGCTACAT 1375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1269 GGTCGTATAGTGATTAGGGAAATTAGCTAGGACCTCTTCCAATTAATTAGAGAGCTGCAT 1328 Query 1376 GATACAGTAGATAATTA-ATTACATATACGTACATATATAATAT 1418 | ||||||| ||||| || | |||||||||||||||||||| Sbjct 1329 -A--CAGTAGAAAATTACAT-A--TATACGTACATATATAATAT 1366 > Ahg901370 jgi|Araly1|901370|Al_scaffold_0004_2020 Length=1116 Score = 1626 bits (880), Expect = 0.0 Identities = 1067/1151 (93%), Gaps = 37/1151 (3%) Strand=Plus/Plus Query 107 ATGGAGCTTCCGTTACTCTCGTATGCTAGCTCCGCGTCGTTTTCACGGACAGGCTTATGC 166 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | | Sbjct 1 ATGGAGCTTCCGCTACTCTCGTATGCTAGCTCCGCGTCGTTTTCGCGGACAGGC-T-T-- 56 Query 167 TCTTCTTCTTCTTCCTCCTCAACTAGTATCTATGAGTTTCCGGAGAGAAGACGGAG-TTT 225 | | | |||||||| |||||||||||||||| |||||| ||||||||||||||||| || Sbjct 57 T-TAC-TCTTCTTCTTCCTCAACTAGTATCTGTGAGTTCCCGGAGAGAAGACGGAGCTTC 114 Query 226 AAAATTGAGATTCAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAG 285 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 AGAA-TGAGATTCAATGGTGGAGAAAGGTCACGAAGCGTTATAGCTTCCGCTGAACGGAG 173 Query 286 CAGTGAAGGGATTGAGAAGACAACAGACACCGTCGGTGGCGGAGGAGGAGGAGGAGCAGG 345 ||| |||||||| |||||| |||| | | ||| ||| | | | | Sbjct 174 CAGCGAAGGGATCGAGAAG---ACAG--A----C---GGC---------GGA-G-G-A-G 208 Query 346 CAGATTTGCTGGTACTGCCATGGAGGTTACTACACTTGATCGTGGTTTTGCTAACTCCAC 405 ||||||||||||||||||||||||| || |||||||||||||| || ||||||||||| Sbjct 209 --GATTTGCTGGTACTGCCATGGAGGTGACAACACTTGATCGTGGATTCGCTAACTCCAC 266 Query 406 CACCGTTGATTTTCCGATCTGGGACAAAATCGGCGCCGTCGTTAGACTTACTTATGGAAT 465 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 267 CACCGTTGATTTTCCGATCTGGGACAAAATTGGCGCCGTCGTTAGACTTACTTACGGAAT 326 Query 466 CGGAATATATGGAGCAATGGCTGTAGCAGGAAGATTTATATGTTCAGTGACTGGAATTGA 525 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 327 CGGAATATATGGAGCAATGGCTGTAGCAGGAAGATTCATATGTTCAGTGACTGGAATTGA 386 Query 526 TTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCTATGCAAC 585 |||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||| Sbjct 387 TTCATCTGGTGGATTTGATCCTTCTCTTGACGCACTTCTCGCCGGACTTGGCTATGCAAC 446 Query 586 ACCACCAATCATGGCTCTTCTCTTCATACTCGACGATGAAGTTGTGAAGCTATCACCGCA 645 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 447 ACCACCAATCATGGCTCTTCTCTTCATACTCGATGATGAAGTTGTGAAGCTATCACCGCA 506 Query 646 TGCTCGGGCCATTAGAGATGTGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTC 705 ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| Sbjct 507 CGCTCGGGCCATTAGAGATGTGGAAGATGAGGAGCTCAGAAGCTTTTTCTTCGGAATGTC 566 Query 706 CCCATGGCAGTTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCG 765 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 567 CCCATGGCAGTTTATACTCATTGTCGCGGCTAGTTCAATAGGAGAAGAGCTCTTTTACCG 626 Query 766 TGTTGCTGTACAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGA 825 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 627 TGTTGCTGTACAGGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGA 686 Query 826 TTCTAGAGGCATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTGAAGT 885 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 687 TTCTAGAGGCATGGCATCTCTGACCGGAGTGTTTCCTCCATTTGTCCCATTTGCTCAAGC 746 Query 886 CTTTGCAGCTGTAATCACCGCGACTCTCACAGGCTCTCTCTACTTTCTTGCTGCGTCTCC 945 |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 747 CTTTGCAGCTGTAATCACTGCCACTCTCACAGGCTCTCTCTACTTTCTTGCTGCTTCTCC 806 Query 946 AAAAGACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGC-GAGATGATTTTAAGA 1004 ||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| Sbjct 807 AAAGGACCCGACATACATTGTTGCCCCGGTTTTAAGGTCACG-CAGAGATGATTTTAAGA 865 Query 1005 AGCTTTTGTCAGCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTG 1064 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || || | Sbjct 866 AGCTTTTGTCAGCTTGGTACGAGAAGAGACAGATGAAGAAGATTTACTCTCCTCTACTCG 925 Query 1065 AAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGACGGATAATATATTAGCAC 1124 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 926 AAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGACCGATAATATTTTAGCAC 985 Query 1125 CGATGATGACGCATGGTATATACTCGGCGGTCATATTAGGGCATGGGCTGTGGAAAATTC 1184 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 986 CGATGATGACGCATGGTATATACTCGGCAGTCATATTAGGACATGGGCTGTGGAAAATTC 1045 Query 1185 ACGATCACCGGAGAAGGTTACGCCGGAGAATCGAACACATTAGATCGGAGGCCACGGATA 1244 | |||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||| Sbjct 1046 ATGATCACCGGAGAAGATTACGCCGGAGAATCGAACGCATTAGATCGGAGGCTACCGATA 1105 Query 1245 AGTTGATTTAA 1255 ||||||||||| Sbjct 1106 AGTTGATTTAA 1116 > Ahg934138 jgi|Araly1|934138|scaffold_402126.1 Length=244 Score = 169 bits (91), Expect = 7e-41 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 519 GAATTGATTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCT 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GAATTGATTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCT 179 Query 579 ATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGA 618 |||||||||||||||||||||||||||||| | | ||||| Sbjct 180 ATGCAACACCACCAATCATGGCTCTTCTCTCCGTTCTCGA 219 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60830121265 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5