BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35370.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482500 jgi|Araly1|482500|fgenesh2_kg.4__1560__AT2G35370.1 1219 0.0
Ahg922337 jgi|Araly1|922337|scaffold_103618.1 584 3e-166
> Ahg482500 jgi|Araly1|482500|fgenesh2_kg.4__1560__AT2G35370.1
Length=784
Score = 1219 bits (660), Expect = 0.0
Identities = 751/794 (95%), Gaps = 10/794 (1%)
Strand=Plus/Plus
Query 1 AATTTCTGCCTTACATATCAAAAGATAGAACACACACACAAATAAAGCAAAGAAACAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1 AATTTCTGCCTTACATATCAAAAGATAGAACACACACACAAATAAAGCAAACAAAGAGAA 60
Query 61 TATCTTTGAGATCTCCTCTTTATTTGGAGAAGACAAAACACAGAACAAGAATTAGAAAGA 120
|||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 61 TATCTTTGAGATCTCCTCTTTATTTGGAGAAGACAAAACACAGAACAA-CA--AG---G- 113
Query 121 AGGGAGAGAAAGCAAAAATGGCACTAAGAATGTGGGCTTCTTCTACAGCAAACGctctca 180
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 114 A---AGAGAAAGCAAAAATGGCACTGAGAATGTGGGCTTCTTCTACAGCAAACGCTCTCA 170
Query 181 agctttcttcttctgtttccaagtctcatctctctcctttctccttctctagatgcttct 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 171 AGCTTTCTTCTTCTGTTTCCAAGTCTCATCTCTCTCCTTTCTCCATCTCTAGATGCTTCT 230
Query 241 ccACAGTTTTGGAGGGTTTGAAGTATGCAAATTCACATGAGTGGGTTAAACATGAAGGCT 300
|||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 231 CCACAGGGTTGGAGGGATTGAAGTATGCAAATTCACACGAGTGGGTTAAACATGAAGGCT 290
Query 301 CTGTTGCCACCATTGGCATCACTGCCCATGCTCAGGACCATTTAGGTGAAGTGGTGTTTG 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CTGTTGCCACCATTGGGATCACTGCCCATGCTCAGGACCATTTAGGTGAAGTGGTGTTTG 350
Query 361 TTGAACTGCCAGAGGACAATACTTCAGTGAGCAAAGAGAAAAGCTTTGGAGCAGTGGAGA 420
| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 351 TGGAACTGCCAGAGGAAAATACTTCAGTGACCAAAGAGAAAAGCTTTGGAGCAGTGGAGA 410
Query 421 GTGTGAAGGCAACAAGTGAGATCTTATCACCAATCTCAGGTGAAATCATTGAGGTTAACA 480
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 411 GTGTGAAGGCCACAAGTGAGATCTTATCACCGATCTCAGGTGAAATCATTGAGGTTAACA 470
Query 481 AGAAGCTCACAGAATCACCTGGCTTGATCAACTCAAGCCCCTATGAAGATGGTTGGATGA 540
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 471 AGAAGCTCACAGAATCACCTGGCTTGATTAACTCAAGCCCTTATGAAGATGGCTGGATGA 530
Query 541 TCAAAGTGAAACCAAGTAGCCCCGCGGAGTTGGAATCTTTGATGGGTCCAAAGGAATACA 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TCAAAGTGAAACCGAGTAGCCCCGCGGAGTTGGAATCTTTGATGGGTCCAAAGGAATACA 590
Query 601 CCAAGTTCTGCGAGGAGGAAGATGCTGCTCACTAGGAGGGTTTCTCTCTGTCTTTTATGT 660
|||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 591 CCAAGTTCTGCGAGGAGGAAGACGCCGCTCACTAGGAGGGTTTCGCTCTGTCTTTTATGT 650
Query 661 TCCAAGTTCTATCAATTCTCATGCTTGTTTTCTAAATTTGCATACACTCTATGACCAACT 720
||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 651 TCCAAAATCTATCAATTCTCATGCTTATTTCCTAAATTTGCATACACTCTGTGACCAACA 710
Query 721 TCACAAAATAAGAGTTCAAGAAGATGAAACAGAGACCTAACAAACACATTAAGATTTTTT 780
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 711 TCACAAAATAAGAGTTCAAGAAGATGAAACAGAGATCTAACAAACACATTGAGATTTTTT 770
Query 781 CTTTCATATATCTT 794
| ||||||| |||
Sbjct 771 CCATCATATAACTT 784
> Ahg922337 jgi|Araly1|922337|scaffold_103618.1
Length=549
Score = 584 bits (316), Expect = 3e-166
Identities = 451/515 (88%), Gaps = 13/515 (3%)
Strand=Plus/Plus
Query 130 AAGCAAAAATGGCACTAAGAATGTGGGCTTCTTCTACAGCAAACGctctcaagctttctt 189
||| |||||||||| | |||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 21 AAGAAAAAATGGCATTGAGAATGTGGGCTTCCTCTACAGCAAATGCTCTCAAGCTCTCTT 80
Query 190 cttctgtttccaagtctcatctc-t--ctcctttctcct-tctctagatgcttctccACA 245
||||||| ||||| ||||||||| | | |||||| || |||| |||||||||||| ||
Sbjct 81 CTTCTGTCTCCAAATCTCATCTCTTGCCAGCTTTCT-CTATCTCCAGATGCTTCTCCTCA 139
Query 246 GTTTTGG-AGGGTTTGAAGTATGCAAATTCACATGAGTGGGTTAAACATGAAGGCTCTGT 304
|| |||| ||| || |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 140 GTGTTGGAAGGACTT-AAGTATGCAAATTCACATGAGTGGGTGAAACATGATGGCTCAGT 198
Query 305 TGCCACCATTGGCATCACTGCCCATGCTCAGGACCATTTAGGTGAAGTGGTGTTTGTTGA 364
||| || ||||| ||||||| |||||| |||||||||||||| ||||| || ||||| ||
Sbjct 199 TGCTACAATTGGTATCACTGACCATGCCCAGGACCATTTAGGAGAAGTTGTATTTGTGGA 258
Query 365 ACTGCCAG-AGGACAATACTTCAGTGAGCAAAGAGAAAAGCTTTGGAGCAGTGGAGAGTG 423
|| |||| || | || | ||||||||||||||| |||||||||||||| || |||||||
Sbjct 259 GCTACCAGAAGCA-AACAGTTCAGTGAGCAAAGAAAAAAGCTTTGGAGCTGTTGAGAGTG 317
Query 424 TGAAGGCAACAAGTGAGA-TCTTATCACCAATCTCAGGTGAAATCATTGAGGTTAACAAG 482
| ||||| |||||||||| || |||| |||||||| |||||| ||||||||||||||| |
Sbjct 318 TTAAGGCCACAAGTGAGATTC-TATCTCCAATCTCCGGTGAAGTCATTGAGGTTAACACG 376
Query 483 AAGCTCACAGAATCACCTGGCTTGATCAACTCAAGCCCCTATGAAGATGGTTGGATGATC 542
|||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 377 AAGCTCACCGAGTCACCTGGTTTGATCAACTCAAGCCCTTATGAAGATGGTTGGATGAT- 435
Query 543 AAA-GTGAAACCAAGTAGCCCCGCGGAGTTGGAATCTTTGATGGGTCCAAAGGAATACAC 601
||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||
Sbjct 436 AAAGGTGAAACCAAGCAGCCCCGCGGAGTTGGAAGCCTTGATGGGTCCAAAGGAATACAC 495
Query 602 CAAGTTCTGCGAGGAGGAAGATGCTGCTCACTAGG 636
|||||||||||| || ||||| |||||||||||||
Sbjct 496 CAAGTTCTGCGAAGATGAAGACGCTGCTCACTAGG 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5