BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35490.1
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934168 jgi|Araly1|934168|scaffold_402156.1 1652 0.0
> Ahg934168 jgi|Araly1|934168|scaffold_402156.1
Length=1170
Score = 1652 bits (894), Expect = 0.0
Identities = 1083/1173 (92%), Gaps = 17/1173 (1%)
Strand=Plus/Plus
Query 66 ACACAAAGATCGGCCATGGCTACGCTCTTCACCGTCGCTCGTCCTTCTTCACTCCTCTAT 125
||||| ||||| ||||||| ||||||||||||| | ||| || | |||| ||||||| |
Sbjct 8 ACACAGAGATCTGCCATGGTTACGCTCTTCACC-AC-CTC-TCGTGCTTCCCTCCTCT-T 63
Query 126 -GTTTCCTCCATAAATC-CAAGCAAGACcttctctccttctatctccctaaaacttaact 183
| |||||| |||| | ||||||||| |||||||||||||||||||||||||| || |
Sbjct 64 CGCTTCCTCTGTAAA-CACAAGCAAGAGCTTCTCTCCTTCTATCTCCCTAAAACCCAATT 122
Query 184 ctctctctttctcttTTGGTTATCGTCCCAAG-CCACTCCGGTTTTCTAAAATCCGATCT 242
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 123 CTCTCTCTTTCTCTTTTGGTCATCGTCCC-AGACCACTCCGGTTTTCTAAAATCCGATCT 181
Query 243 TCTCTGCCCTCGGAATCTGAATCGGAATCCGACCTAGATGCGTCTGCA-GTTACAGATGA 301
|||||||||||||| || ||||| ||||||||||||||||||||| | |||||||||||
Sbjct 182 TCTCTGCCCTCGGAGTCCGAATCCGAATCCGACCTAGATGCGTCT-AATGTTACAGATGA 240
Query 302 ATGGGGTGAGAAACCTGGAGATGCAAATGAGCCCGACTCTCAGCCAGATAATGTGAC-CG 360
|||||||||||||||||||||||||| ||||||| | |||||||| ||| || | | |
Sbjct 241 ATGGGGTGAGAAACCTGGAGATGCAAGTGAGCCCCAATCTCAGCCGGAT-ATTTCTCTGG 299
Query 361 TGAATGTGATTACGGACGAATGGGGCGAGAAATCCGGACCCGAACT-TGAGGAATCCGGG 419
||||||||| ||||||||||||||| |||||||| ||||||||| | |||||||||||||
Sbjct 300 TGAATGTGACTACGGACGAATGGGGAGAGAAATCTGGACCCGAA-TCTGAGGAATCCGGG 358
Query 420 ACCCGGTTTATGGAATCGGATCCTCCAAGGAACGAAGACGAGTGGGGAGG-AGAAATTGG 478
|||||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 359 ACCCGGTTTACGGAATCGGATCCTCCAAGGAACGAGGACGAGT-GGGAGGAAGAAATTGG 417
Query 479 AGGAGAAACTGAAGCCGACGCTGGAAATGGAAGTGCGGTGTCTGACCCGACTTGGGAGCT 538
| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAAAGAAGTTGAAATCGACGCCGGAAATGGAAGTGCGGTGTCTGACCCGACTTGGGAGCT 477
Query 539 GAAAAGGTGTTTGGCGGATTCGGTGTACGGAACTGAATTAGGTTTCAAAGCTGGGTCAGA 598
||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 478 GAAAAGGTGTTTGGCGGATTCTGTGTACGGAACTGAATTAGGTTTCCGGGCTGGCTCAGA 537
Query 599 AGTCCGAGCGGAGGTTTTGGAGCTTGTGAATCAACTGGAAGCTCTGAATCCTACTCCGGC 658
|| ||||||||||| || ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 538 TGTTCGAGCGGAGGTGTTAGAGCTTGTGAATCAATTGGAAGCTCTGAATCCTACGCCGGC 597
Query 659 TCCGTTAGAGAATCCAGAACTTCTCGACGGCAACTGGGTTTTGCTGTACACTGCTTTCTC 718
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCCGGTAGAGAATCCGGAGCTTCTCGACGGCAACTGGGTTTTGCTGTACACTGCTTTCTC 657
Query 719 TGAGTTGATTCCTCTACTAGCTGCGGGTTCGACACCTTTGTTGAAAGTTAAAAGCATAAG 778
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 658 TGAGTTGATTCCTCTACTAGCTGCGGGTTCGACACCTTTGTTGAAAGTGAAAAGCATAAG 717
Query 779 TCAGTCAATAGACACAAACAATCTCATTATCGACAACTCCACTACACTCTCCAGCCCTTT 838
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 TCAGTCGATAGACACAAACAATCTCACTATCGACAACTCCACTACACTCTCCAGCCCTTT 777
Query 839 TGCAGACTTCTCCTTCAGTGCTACTGCTTCATTTGAAGTTCGAAGCCCTTCAAGAATTGA 898
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGCAGACTTCTCATTCAGTGCTACTGCTTCATTTGAAGTTCGAAGCCCTTCAAGAATTGA 837
Query 899 GGTTTCTTTCAAAGAAGGCACGCTAAAACCCCCGGTGATCAAATCAAGTGTAGATCTCCC 958
|||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||
Sbjct 838 GGTTTCTTTCAAAGAAGGTACGCTAAAACCCCCGGAGATCAAATCAAGTGTTGATCTCCC 897
Query 959 AGAGAGTGTGGGCGTCTTTGGGCAGCAGATTAGCCTTTCGTTGTTAAAGCAGTCTTTGAA 1018
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 898 AGAGAGTGTGGGCGTCTTTGGGCAGCAGATTAGCCTTTCGTTATTGAAGCAATCTTTGAA 957
Query 1019 CCCCTTACAAGATGTGGCAGCAAACATTTCACGGGCACTCTCTGGTCAGCCACCTCTCAA 1078
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 958 CCCTTTACAAGATGTGGCAGCAAACATTTCACGGGGACTCTCTGGTCAGCCACCTCTTAA 1017
Query 1079 GCTTCCGTTTCCAGGAAACCGAGGCAGCTCTTGGCTCTTGACCACTTATCTCGACAAGGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCTTCCGTTTCCAGGAAACCGAGGCAGCTCTTGGCTCTTGACCACTTATCTCGACAAGGA 1077
Query 1139 TCTCAGGATTTCTAGAGGAGATGGTGGCCTTTTCGTGCTTGCCAGAGAAGGAAGCTCTCT 1198
|||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 1078 TCTCAGGATTTCAAGAGGAGACGGTGGGCTTTTCGTACTTGCCAGAGAAGGAAGCTCTCT 1137
Query 1199 GCTTGAGCTCTGAAATATTTGATAAAGTATATA 1231
||||||||||||| |||||||| || |||||||
Sbjct 1138 GCTTGAGCTCTGATATATTTGAGAAGGTATATA 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51504060867
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5