BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35605.1 Length=677 Score E Sequences producing significant alignments: (Bits) Value Ahg482518 jgi|Araly1|482518|fgenesh2_kg.4__1578__AT2G35605.1 924 0.0 > Ahg482518 jgi|Araly1|482518|fgenesh2_kg.4__1578__AT2G35605.1 Length=672 Score = 924 bits (500), Expect = 0.0 Identities = 620/676 (92%), Gaps = 15/676 (2%) Strand=Plus/Plus Query 11 TTCAGTTTTCAAAGTCTGTGAGTTTGATCTAGGGTTTTAG--ACAGAGCTCTCTCTCCTT 68 ||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||||| Sbjct 1 TTCAGCTTTCAAAGTCCGTG-GTTTGATCTAGGGTTTTAGACACAGAGCTCTCTCTCCTT 59 Query 69 CCAATTTCAAAACTGTGTGAAGAAG-AAAA-----A-A-TGTCGAGGGTTTTCGGAGCTT 120 |||| |||||||||||||||||||| |||| | | | || |||||||| ||||||| Sbjct 60 CCAAATTCAAAACTGTGTGAAGAAGAAAAATGGCGACAGTTTCTAGGGTTTTTGGAGCTT 119 Query 121 GCAGGGTACTGATGGCGAAGGCCGCTTCTTCCACCGGCGCTAAAACTGGTAGACAAGGTA 180 |||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| Sbjct 120 GCAGGGTACTGATGGCGAAGGCCGCTTCTTCCTCCGGCGCCAAAAATGGTAGACAAGGTA 179 Query 181 CTGGCATTCTTAAGGTGGTTCCCGTTTCGAAGCCGCTCGCTAATTTTATTGGGGAAAACG 240 |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 180 CTGGTATTCTTAAGGTGGTTCCCGTTTCGAAGCCGCTCGCTACCTTTATTGGGGAAAACG 239 Query 241 AAGTCTCTCGCACAACTGCCGTCAAGAAAATCTGGGAATATATCAAGCTTAACAATCTTC 300 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 240 AAGTCTCTCGCACAACCGCCGTCAAGAAAATCTGGGAATACATCAAGCTTAACAATCTTC 299 Query 301 AGAATCCGGTGAACAAAAGGGAGATACTATGCGATGAGCAACTCAAGACGATCTTCAGTG 360 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 300 AGAATCCGGAGAACAAAAGGGAGATACTATGCGATGAGCAACTGAAGACGATCTTCAGTG 359 Query 361 GGAAAGACACTGTCGGGTTCCTCGAGATTTCAAAACTTCTGTCTCAACATTTTCCTAAGT 420 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 360 GGAAAGACACTGTCGGGTTCCTCGAGATCTCGAAACTTCTGTCTCAACATTTTCCTAAGT 419 Query 421 CTGCTTGATTCCCACATTGCATTTTCCTTAGCTTCTATTACTATATCATCCAAGAAACGG 480 ||||||||||| ||||||||||| |||||||||| | ||||| |||||||||||||| || Sbjct 420 CTGCTTGATTCTCACATTGCATTATCCTTAGCTTATTTTACTCTATCATCCAAGAAATGG 479 Query 481 TTCTTCtttttttGTATCTTTTTATGGGTGATCTTTATTGGTTATATATAGACTACCAGC 540 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 480 CTCTTCTTTTTTTGTATCTTCTTATGGGTGATCTTTATTGGTTATATATAGACTACCAAC 539 Query 541 CAGTTCCCATCTGTCTTAGACGGTTTATGTATGGATGATGGTTCAAAGTCAATTTAGCTA 600 |||||||||||||||| ||||| ||||||||| ||||||| | ||| |||||||||| | Sbjct 540 CAGTTCCCATCTGTCTGAGACGTTTTATGTATTGATGATGATCCAAGGTCAATTTAGTTT 599 Query 601 ATGGTGGTTTGTG-TCTTGGAACTTTTTTATCTCTACTATAATCTTCTTCCATCTCAATA 659 ||||| || ||| ||||||| ||| | |||||||||||||||||||||| |||||||| Sbjct 600 ATGGT--TT-GTGGTCTTGGAGCTTGTCTATCTCTACTATAATCTTCTTCGATCTCAATG 656 Query 660 TGGCATGGACTCCTTC 675 || ||||||||||||| Sbjct 657 TGACATGGACTCCTTC 672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24856141884 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5