BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35658.2
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321280 jgi|Araly1|321280|fgenesh1_pm.C_scaffold_4001337 407 5e-113
> Ahg321280 jgi|Araly1|321280|fgenesh1_pm.C_scaffold_4001337
Length=276
Score = 407 bits (220), Expect = 5e-113
Identities = 244/256 (95%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 26 ATGCGTCGATCGGCGAGCGCCTCCATAGTTTCCGACCAACTCTCAGCGAATTCTCCTTCG 85
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGCGTCGATCGGCGAGCGCCTCCATAGTTTCCGACCAACTCTCAGCGAATTCTCCGTCA 60
Query 86 CCATCACCATCTCCGCCGCGAATTAAAACCTCCGCAGATTCGGATGATAGCCACCTTCTT 145
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 61 CCATCACCATCTCCGCCGCGAATTAAAACCGCCGCAGATTCAGATGATAGCCACCTTCTT 120
Query 146 TTGCCTAGGTACGATCCCAACTCTCATCCCGGGAAGAAGAACAAATCGCGATTCAGATCC 205
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TTACCTAGGTACGATCCCAACTCTCATCCCGGGAAAAAGAACAAATCGCGATTCAGATCC 180
Query 206 GCCGAGAACGCTATCCATTTCATTCCGATCGTACTCATTCTCTGCGCAGTCATACTTTGG 265
||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| |||
Sbjct 181 GCCGAAAACGCTATCCATTTCATTCCAATCGTACTCATTCTCTGCGCCGTTATACTCTGG 240
Query 266 ATGTTTTCGAATCCAG 281
|||||||||||||||
Sbjct 241 TTGTTTTCGAATCCAG 256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22149414777
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5