BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35660.1 Length=1478 Score E Sequences producing significant alignments: (Bits) Value Ahg482529 jgi|Araly1|482529|fgenesh2_kg.4__1589__AT2G35660.1 2178 0.0 Ahg481889 jgi|Araly1|481889|fgenesh2_kg.4__949__AT2G29720.1 1775 0.0 > Ahg482529 jgi|Araly1|482529|fgenesh2_kg.4__1589__AT2G35660.1 Length=1423 Score = 2178 bits (1179), Expect = 0.0 Identities = 1357/1441 (94%), Gaps = 20/1441 (1%) Strand=Plus/Plus Query 39 ACACGGTCGTGGCCATGTCTGTTCTGCTTCCGATGTATCCTCTCCAATCCTT-GGCCAGA 97 ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| | Sbjct 1 ACACGGTCGTGGCCATGTCCGTTCTGCTTCCGATCTATCCTCTCCAATCCTTAGGCCA-A 59 Query 98 AGCAAGAGATTGTTTCCGATTCGAACCAGATCAAAACCGGTTTGTTTAGCACTGACCAAT 157 ||||| |||| ||| ||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 60 AGCAACAGATGGTTCCCGGTTCGAACCAGATCAAAACCGGTGTGTTTAGCACTGACCAAT 119 Query 158 GCTCAAACAAACGGTGGTGACCAAGAGGAGAAAGTAGTGATTGTTGGCGCCGGGATTGGC 217 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 120 GCTCAAACAAACGGTGGTGACCAAGAGGAGAATGTAGTGATTGTTGGCGCCGGGATTGGC 179 Query 218 GGACTTGCCACTGCCGTTTCACTTCACAGGCTTGGAATCCGGTCGGTGGTGTTGGAGCAG 277 |||||| |||| |||||||| |||||| |||| ||||||||||||||||||||||||||| Sbjct 180 GGACTTACCACCGCCGTTTCTCTTCACCGGCTAGGAATCCGGTCGGTGGTGTTGGAGCAG 239 Query 278 GCAGAGTCGCTTCGTACTGGTGGAACATCACTGACGCTATTCAAGAATGGGTGGCGCGTT 337 |||||||||||||| || || |||||||| ||||| |||||||||||||||||||||||| Sbjct 240 GCAGAGTCGCTTCGGACCGGAGGAACATCGCTGACCCTATTCAAGAATGGGTGGCGCGTT 299 Query 338 CTTGACGCCATTTCCGTCGGGCCTCAACTCCGAACGCAGTTTCTTGAAATCGAAGGGATG 397 ||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 300 CTTGATGCCATCTCCGTCGGGCCTCAACTCCGACCGCAGTTTCTTGAAATCGAAGGGATG 359 Query 398 GTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTCAAAGACGATGATCAA 457 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 360 GTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGCTCTTTCAAATTCAAAGACGAAGATCAA 419 Query 458 AGCCAAGAAGTTCGGGCCGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAGCCAGCTT 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AGCCAAGAAGTTCGGGCCGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAGCCAGCTT 479 Query 518 CCTCCACAAACCATTCGGTTTTCCTCAAAACTGGAAAGTATACAAAGCAATGCCAATGGT 577 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 480 CCTCCAGAAACCATTCGGTTCTCCTCAAAACTGGAAAGTATACAAAGCAATGCCAATGGT 539 Query 578 GACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCACAGATTGTTATTGGTTGT 637 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 540 GACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCAAAGATTGTTATTGGTTGT 599 Query 638 GACGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATATGTTGGC 697 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GATGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATATGTTGGT 659 Query 698 CATTGCGCTTACCGTGGTCTTGGGTTCTATCCAAATGGACAGCCATTTCAGAAAAAGGTG 757 |||||||||| |||||| || ||||||| ||||||||| |||||||||||||| |||||| Sbjct 660 CATTGCGCTTTCCGTGGCCTCGGGTTCTTTCCAAATGGGCAGCCATTTCAGAACAAGGTG 719 Query 758 AACTACATATACGGTAAAGGGATTAGAGCTGGATATGTACCTGTATCTACAACAAAAGTC 817 |||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 720 AACTACATATACGGGAAAGGGCTTAGAGCTGGATATGTACCTGTATCTGCAACAAAAGTC 779 Query 818 TACTGGTTCATCTGTTTCAACAGCCCATCTCTAGGGCCCAAAATTACGGATCCAGCGATC 877 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 780 TACTGGTTCATCTGTTTCAACAGGCCATCACTAGGGCCCAAAATTACGGATCCAGCTATC 839 Query 878 CTaaaaaaaCAAGCCAAAGAACTGGTTAGTACATGGCCAGAAGATCTGCAAAACCTCATC 937 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 840 CTAAAAAAACAAGCCAAAGAACTTGTTAGTACCTGGCCAGAAGATCTGCAAAACCTCATC 899 Query 938 GATTTAACACCTGATGAAACTATCAGCAGAACTCCTCTAGTAGACCGGTGGCTATGGCCT 997 ||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| Sbjct 900 GATCTAACACCTGATGAAACCATCAGCAGAACTCCTCTTGTAGACCGGTGGCTTTGGCCA 959 Query 998 GGCATTGCTCCTCCAGCATCAAAAGGACGAGTGGTTCTTGTTGGAGATGCTTGGCACCCA 1057 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 960 GGCATTGCTCCTCCAGCATCAAAAGGCCGAGTGGTTCTTGTTGGAGATGCTTGGCACCCA 1019 Query 1058 ATGACTCCAAATCTTGGACAAGGTGCTTGTTGTGCCTTGGAAGATTCAGTAGTTCTGGCA 1117 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1020 ATGACTCCAAATCTTGGACAAGGTGCTTGCTGTGCCTTGGAAGATTCAGTTGTTCTGGCC 1079 Query 1118 AATAAACTTGCCAATGCAATAAATGGAGGAACCGAATCAATTGAAGTAG-CAATGGAATC 1176 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1080 AATAAACTTGCCAATGCAATAAATGGAGGAACCGAATCAATTGAAG-AGGCAATGGAATC 1138 Query 1177 ATACGGGAGTGAGAGATGGTCTCGAGCATTCCCGTTGACAGTACGTGCAAACCTAGTTGG 1236 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1139 ATACGGGAGTGAGAGATGGTCTCGGGCATTCCCGTTGACAGTACGTGCAAACCTAGTCGG 1198 Query 1237 CGCACTTCTGCAATGGGAGAATCCTCTAGTGTGTTCCATTAGAAACAATATTGTCATACC 1296 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1199 AGCACTTCTGCAATGGGAGAATCCTCTAGTGTGTTCCATAAGAAACAATATTGTCATACC 1258 Query 1297 AAAGTTACTGAGGCTTGGACCAATGCTTGAACACACAAACTTTGAGTGTGAACCTCTCTT 1356 |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1259 AAAGTTACTGAGACTCGGACCAATGCTGGAACACACAAACTTTGAGTGTGAACCTCTCTC 1318 Query 1357 TGTTTCTAAAAGCTGAATTTCGTATATATAGTGAGATCCATTGAATAGAGAGACTTGAAC 1416 |||||| ||||||||||||||||||||||||||||||| ||||| | || Sbjct 1319 TGTTTCAAAAAGCTGAATTTCGTATATATAGTGAGATC--TTGAA--------C---AA- 1364 Query 1417 AATGTATAATCATAGGAACAATATAAACTCTGTGATTGAATGTAAAAGAATCATACAATG 1476 ||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1365 --TGTATGATCAGAGGAACAATATAAACTCTGTGATTAAATGTTAAAGAATCATACAATG 1422 Query 1477 T 1477 | Sbjct 1423 T 1423 > Ahg481889 jgi|Araly1|481889|fgenesh2_kg.4__949__AT2G29720.1 Length=1515 Score = 1775 bits (961), Expect = 0.0 Identities = 1233/1363 (90%), Gaps = 23/1363 (2%) Strand=Plus/Plus Query 46 CGTGGCCATGTCTGTTCTGCTTCCGATGTATCCTCTCCAAT-C--CTTGGCCAGAAGCAA 102 |||||| |||||| || ||| |||||| ||||||||||||| | ||||||||||||||| Sbjct 12 CGTGGCTATGTCTCTTGTGCGTCCGATCTATCCTCTCCAATCCTTCTTGGCCAGAAGCAA 71 Query 103 GAGATTGTTTCCGATTCGAACCA-GATCAAAACCGGTTTGTTTAGCACT--G-ACCA-AT 157 ||||| ||||||| |||||| || || |||||||||||||||||||| | | |||| | Sbjct 72 GAGATGGTTTCCGGTTCGAA-CAGGAACAAAACCGGTTTGTTTAGCAATGAGTACCAGA- 129 Query 158 GCTC-AAACAAACGGTGGTGACCAAGAGGAGAAAGTAGTGATTGTTGGCGCCGGGATTGG 216 || | |||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||| Sbjct 130 GC-CGAAACAAGCGGTGCTGACCGAGAGGAGAAAGTAGTGATTGTTGGCGGCGGGATTGG 188 Query 217 CGGACTTGCCACTGCCGTTTCACTTCACAGGCTTGGAATCCGGTCGGTGGTGTTGGAGCA 276 |||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||||| Sbjct 189 CGGACTTGCCACCGCCGTTGCTCTTCACCGGCTTGGAATCCGGTCGGTGGTGTTGGAGCA 248 Query 277 GGCAGAGTCGCTTCGTACTGGTGGAACATCACTGACGCTATTCAAGAATGGGTGGCGCGT 336 ||||||||||||||| || || |||||||| |||||||||| ||||||||||||||| || Sbjct 249 GGCAGAGTCGCTTCGGACCGGAGGAACATCTCTGACGCTATCCAAGAATGGGTGGCGTGT 308 Query 337 TCTTGACGCCATTTCCGTCGGGCCTCAACTCCGAACGCAGTTTCTTGAAATCGAAGGGAT 396 |||||||| ||| ||||| || ||||||||||||| ||||||||||||||| ||||| | Sbjct 309 TCTTGACGACATCTCCGTTGGACCTCAACTCCGAAAACAGTTTCTTGAAATCCAAGGGGT 368 Query 397 GGTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTCAAAGACGATGATCA 456 |||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| Sbjct 369 GGTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCCAATTTAAAGACAATGATCA 428 Query 457 AAGCCAAGAAGTTCGGGCCGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAGCCAGCT 516 |||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| Sbjct 429 AAGCCAAGAAGTTCGGGCGGTGGAGAGACGAGTACTCTTGAAAACACTTGCAAGCCAGCT 488 Query 517 TCCTCCACAAACCATTCGGTTTTCCTCAAAACTGGAAAGTATACAAAGCAATGCCAATGG 576 |||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 489 TCCTCCGCAAACCATTCGGTTTTCCTCAAAACTAGAAAGTATACAAAGCAATGTCAATGG 548 Query 577 TGACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCACAGATTGTTATTGGTTG 636 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 549 TGACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCAAAGATTGTTATAGGTTG 608 Query 637 TGACGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATATGTTGG 696 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 609 TGATGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATACGTTGG 668 Query 697 CCATTGCGCTTACCGTGGTCTTGGGTTCTATCCAAATGGACAGCCATTTCAGAAAAAGGT 756 ||| ||||| |||||| || ||||||| |||||||||||||||||||||| ||||||| Sbjct 669 TTATTCCGCTTTCCGTGGCCTCGGGTTCTTTCCAAATGGACAGCCATTTCAGCAAAAGGT 728 Query 757 GAACTACATATACGGTAAAGGGATTAGAGCTGGATATGTACCTGTATCTACAACAAAAGT 816 ||||||||||| ||||| |||| || |||||| ||||||||||||||||||||||||||| Sbjct 729 GAACTACATATTCGGTAGAGGGCTTCGAGCTGCATATGTACCTGTATCTACAACAAAAGT 788 Query 817 CTACTGGTTCATCTGTTTCAACAGCCCATCTCTAGGGCCCAAAATTACGGATCCAGCGAT 876 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 789 CTACTGGTTCATCTGTTTCAACAGCCCATCTCTAGGTCCCAAAATTACAGATCCAGCTAT 848 Query 877 CCTaaaaaaaCAAGCCAAAGAACTGGTTAGTACATGGCCAGAAGATCTGCAAAACCTCAT 936 ||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 849 CCTAAGAAAACAAGCCAAGGAACTGGTTAGTACCTGGCCAGAAGATCTGCAAAACCTCAT 908 Query 937 CGATTTAACACCTGATGAAACTATCAGCAGA-ACTCCTCTAGTAGACCGGTGGCTATGGC 995 |||| ||||||||||||| | ||||||||| | |||||| |||||||||||| | |||| Sbjct 909 CGATCTAACACCTGATGATGCAATCAGCAGAGA-TCCTCTTGTAGACCGGTGGGTTTGGC 967 Query 996 CTGGCATTGCTCCTCCAGCATCAAAAGGACGAGTGGTTCTTGTTGGAGATGCTTGGCACC 1055 ||||||||||||||| |||||||||||| || || ||||||||||||||||||||||||| Sbjct 968 CTGGCATTGCTCCTCGAGCATCAAAAGGTCGGGTTGTTCTTGTTGGAGATGCTTGGCACC 1027 Query 1056 CAATGACTCCAAATCTTGGACAAGGTGCTTGTTGTGCCTTGGAAGATTCAGTAGTTCTGG 1115 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1028 CAATGACTCCAAATCTTGGACAAGGTGCTTGTTGTGCCTTGGAAGATTCAGTTGTTCTGG 1087 Query 1116 CAAATAAACTTGCCAATGCAATAAATGGAGGAACCGAATCAATTGAAGTAGCAATGGAAT 1175 ||||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||| Sbjct 1088 CAAATAAACTTGCCACTGCAATGAATGGAGGGACCGAATCAATTGAAGGGGCAATGGAAT 1147 Query 1176 CATACGGGAGTGAGAGATGGTCTCGAGC-ATTCCCGTTGACAGTACGTGCAAACCTAGTT 1234 |||| ||||||||||||||||||| || ||||| ||||||||||| ||||||||||||| Sbjct 1148 CATATGGGAGTGAGAGATGGTCTC-AGGTATTCCGGTTGACAGTACTTGCAAACCTAGTT 1206 Query 1235 GGCGCACTTCTGCAATGGGAGAATCCTCTAGTGTGTTCCATTAGAAACAATATTGTCA-T 1293 || ||||||||| | ||| |||||||| ||||||||||||||| |||||||||||| | Sbjct 1207 GGAAAACTTCTGCAGTCGGACAATCCTCTTGTGTGTTCCATTAGAGACAATATTGTCAGT 1266 Query 1294 ACCAAAGTTACTGAGGCT-T-GGACCAATGCTTGAACACACAAACTTTGAGTGTGAACCT 1351 | || | || | || | |||||||| || ||||||||||||||||||||||| ||| Sbjct 1267 GC-AATGGGACA-ATCCTCTCGGACCAATTCTGGAACACACAAACTTTGAGTGTGAGCCT 1324 Query 1352 CTCTTTGTTTCTAAAAGCTGAATTTCGTATATATAGTGAGATC 1394 |||| |||||| |||||||||| | || ||| |||||||||| Sbjct 1325 CTCTATGTTTCAAAAAGCTGAACT--GTCTATGTAGTGAGATC 1365 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55307035740 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5