BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35680.1 Length=1800 Score E Sequences producing significant alignments: (Bits) Value Ahg934191 jgi|Araly1|934191|scaffold_402179.1 1687 0.0 Ahg918667 jgi|Araly1|918667|Al_scaffold_0575_2 558 4e-158 > Ahg934191 jgi|Araly1|934191|scaffold_402179.1 Length=1056 Score = 1687 bits (913), Expect = 0.0 Identities = 1015/1063 (95%), Gaps = 11/1063 (1%) Strand=Plus/Plus Query 472 TCTTTAGATCTTTGACTGAGGAATATGTATATCAAAGAACTGACGGAAA-CG--GATGAG 528 ||| ||||||||||||||||||||||||||||| ||||||||||||||| | || ||| Sbjct 1 TCTCTAGATCTTTGACTGAGGAATATGTATATCGAAGAACTGACGGAAAGGGAAGAGGAG 60 Query 529 GAGAAGAGGGAGAGATCGGTTGAGGATAACGTTGATGATGGAGATAAGGCGGTATTGGTG 588 |||||| |||||||||||||||||||| |||||| |||||||||||||||| | ||||| Sbjct 61 GAGAAGGGGGAGAGATCGGTTGAGGATCACGTTGCTGATGGAGATAAGGCGATTTTGGTT 120 Query 589 AGCAGAGGAAACGTGATTGTGTTGACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGT 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGCAGAGGAAACGTGATTGTGTTGACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGT 180 Query 649 GCTTTGTTTTATCCTACTCTGGTTTACAACGTTGTTAGGAATAAGCTCGA-ATCTGAGTT 707 || |||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| Sbjct 181 GCCTTGTTTTATCCTACTCTGATTTACAACGTTGTTAGGAATAAGCTCGAGA-CTGAGTT 239 Query 708 TCGCTGGTGGGATCGCGTGGCTGAGTTTATATTACTGGGAGCTGTTCCATTTCCATCTGA 767 ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| Sbjct 240 TCGCTGGTGGGATCGAGTTGCTGAGTTTATATTACTGGGAGCTGTTCCATTCCCATCTGA 299 Query 768 TGTTCCACAGCTGAAAGAGCTCGGTGTTTGTGGAGTGATCACTCTGAATGAGCCATATGA 827 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGTTCCACAGCTGAAAGAGCTCGGTGTTTGTGGAGTGATCACTCTGAATGAGCCATATGA 359 Query 828 AACTTTGGTTCCATCGTCTCTCTACAAATCTTACTGCATTGACCACCTGGTGATTGCTAC 887 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 360 AACTTTGGTTCCATCGTCTCTCTACAAATCTTACTGCATTGACCACCTGGTGATTGCCAC 419 Query 888 AAGAGATTATTGTTTTGCTCCTTCCATGGAAGCAATATGCCAAGCTGTAGAATTTATCCA 947 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AAGGGATTATTGTTTTGCTCCTTCCATGGAAGCAATATGCCAAGCTGTAGAATTTATCCA 479 Query 948 TAGAAATGCTTCGCTTGGAAAGACGACTTATGTTCACTGCAAAGCGGGTCGGGGTCGCAG 1007 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 480 TAGAAATGCTTTGCTTGGAAAGACTACTTATGTTCACTGCAAAGCGGGTCGGGGTCGCAG 539 Query 1008 CACAACTATTGTCATATGCTACTTGGTTCAACACAAAAACATGACACCTGAAGCAGCATA 1067 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CACAACTATTGTCATTTGCTACTTGGTTCAACACAAAAACATGACACCTGAAGCAGCATA 599 Query 1068 TTCCTACGTGAGATCAATCAGGCCCAGGGTTCTTTTAGCAGCAGCCCAATGGAAGGCCGT 1127 | |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 600 TGCCTACGTGAGGTCAATCAGGCCCAGGGTTCTATTAGCAGCCGCCCAATGGAAGGCCGT 659 Query 1128 TGTTGAGTACTACCATGTCAAGGTGCTGAATACTCAGAGTTGCTTAACTGATGCAACTTC 1187 |||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| Sbjct 660 TGTTGAGTACTACCATGTCAAGGTGCTGAATACTAAGAGCTGCTTAACTGATACAACTTC 719 Query 1188 AGCTTTGATCCCGAGAAATGTGAAGCAGGTTTGTTCTGGGAATGTAGTGGTGTTTGATGA 1247 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 720 AGCTTTGATCCCGAGAAACGTGAAGCAGGTTTGTTCTGGGAATGTAGTGGTGTTTGATGA 779 Query 1248 TGGGTCAATGGTTGTAGTCACCCACTCGGATCTAGAGGGCTATAATGATGATGACTCACG 1307 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 780 TGGGTCAATGGTGGTAGTCACCCACTCGGATCTAGAGGGCTATAATGATGGTGACTCACG 839 Query 1308 GTCACGGAGGTCAGTGAAAGTTAATGGGAATGAGCTATGGGCGGCAGCTGCAGATCTGAG 1367 | | || |||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 840 G--A-GG---TCAGTGAATGTTACTGGGAATGAGCTATGGGCGGCAGCTGCAGATCTGAG 893 Query 1368 CATGGTGTACAGGGTGAAAGTGGTGGGGCAGGCTGCGATGGCGAGGATATCGTGTCTGTG 1427 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 894 CATGGTGTACCGGGTGAAAGTGGTGGGGCAGGCTGCGATGGCGAGGATCTCGTGTCTGTG 953 Query 1428 GCTGGGCTTGCGTGAGGACCAAAAGCTTTCTGGGAAAAATCTTTCCATGGGAGGCATAAG 1487 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 954 GCTAGGCTTGCGTGAGGACCACAAGCTTTCTGGGAAAAATCTTTCCATGGGAGGCATAAG 1013 Query 1488 CGTCGACATTTCTGTCTACTGATGATGATGGCGAAGAATGAAT 1530 |||||||||||| |||||||||||||||||||||||||||||| Sbjct 1014 CGTCGACATTTCCGTCTACTGATGATGATGGCGAAGAATGAAT 1056 > Ahg918667 jgi|Araly1|918667|Al_scaffold_0575_2 Length=387 Score = 558 bits (302), Expect = 4e-158 Identities = 347/368 (94%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 496 ATGTATATCAAAGAACTGACGGAAA-CG--GATGAGGAGAAGAGGGAGAGATCGGTTGAG 552 ||||||||| |||||||||| |||| | || ||||||||| ||||||||||||||||| Sbjct 1 ATGTATATCGAAGAACTGACAGAAAGGGAAGAGGAGGAGAAGGGGGAGAGATCGGTTGAG 60 Query 553 GATAACGTTGATGATGGAGATAAGGCGGTATTGGTGAGCAGAGGAAACGTGATTGTGTTG 612 ||| |||||| |||||||||||||||| | ||||| |||||||||||||||||||||||| Sbjct 61 GATCACGTTGCTGATGGAGATAAGGCGATTTTGGTTAGCAGAGGAAACGTGATTGTGTTG 120 Query 613 ACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGTGCTTTGTTTTATCCTACTCTGGTT 672 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 121 ACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGTGCCTTGTTTTATCCTACTCTGATT 180 Query 673 TACAACGTTGTTAGGAATAAGCTCGA-ATCTGAGTTTCGCTGGTGGGATCGCGTGGCTGA 731 |||||||||||||||||||||||||| | |||||||||||||||||||||| || ||||| Sbjct 181 TACAACGTTGTTAGGAATAAGCTCGAGA-CTGAGTTTCGCTGGTGGGATCGAGTTGCTGA 239 Query 732 GTTTATATTACTGGGAGCTGTTCCATTTCCATCTGATGTTCCACAGCTGAAAGAGCTCGG 791 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 240 GTTTATATTACTGGGAGCTGTTCCATTCCCATCTGATGTTCCACAGCTGAAAGAGCTCGG 299 Query 792 TGTTTGTGGAGTGATCACTCTGAATGAGCCATATGAAACTTTGGTTCCATCGTCTCTCTA 851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGTTTGTGGAGTGATCACTCTGAATGAGCCATATGAAACTTTGGTTCCATCGTCTCTCTA 359 Query 852 CAAA-TCT 858 |||| ||| Sbjct 360 CAAAGTCT 367 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67572094630 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5