BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35800.1 Length=3115 Score E Sequences producing significant alignments: (Bits) Value Ahg482552 jgi|Araly1|482552|fgenesh2_kg.4__1612__AT2G35800.1 4481 0.0 > Ahg482552 jgi|Araly1|482552|fgenesh2_kg.4__1612__AT2G35800.1 Length=2954 Score = 4481 bits (2426), Expect = 0.0 Identities = 2836/3020 (94%), Gaps = 84/3020 (3%) Strand=Plus/Plus Query 6 AGGGTCATCATCATTTCATGGTTACctcctcttcctctcttcttactctcaccatatctg 65 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1 AGGGTCATCATCATTTCATGGTTACCTCCTCCTCCTCTCTTCTTACTCTCACCATATCTG 60 Query 66 ctctctctctctctctGTTTCAAGCTTTTGCTCCCA-------TT--TTTCATTTCCTTC 116 |||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 61 ------CTCTCTCTCTGTTTCAAGCTTTTGCTCCCATTGCTTCTTCATTTCATTTCCTTC 114 Query 117 GTATTCTCGCTCGAGCTTAGCGGTTGATGTACCAATGACCAAATCGATATTTGAATCGCC 176 ||||||||||||||||||| |||||||| | |||||| |||||||| ||| ||||||||| Sbjct 115 GTATTCTCGCTCGAGCTTAACGGTTGATATCCCAATGGCCAAATCGGTATCTGAATCGCC 174 Query 177 GTGGCTACCTTTCTTTTTCTTCTGATTTCTCTATCTCTCGCTTGATTCTACCACTTTTAG 236 || | | ||| ||| | || | | ||| | | ||||| | ||||||| Sbjct 175 GT--C--GC-TTC-----CTT-T--CTT-T-T-TCT-T--C-TGATT-T----CTTTTAG 209 Query 237 GGTTTCTATTATTCCCAGGGACTTTGGGTTTCTTTAAGAAGTTCGATTCGTCTCCGTTTT 296 ||||||| || |||||| ||||||||||||||||||||||||| |||| | | |||||| Sbjct 210 GGTTTCTTTTTTTCCCACGGACTTTGGGTTTCTTTAAGAAGTTGGATTAG--TGCGTTTT 267 Query 297 CTTTTTAGGGTTAACGAAGTCTGTGGTGTTGGATTTCGATCtttttttttttGGTATCTT 356 ||||||||| | || || |||||||| ||||||| ||| ||||||||||| Sbjct 268 GTTTTTAGGG-T-------TC-GT-GTGTTGGA-TTCGATC----TTTCTTTGGTATCTT 312 Query 357 CCCCATTGACTGTTGCGGTGATAAGAGAG-TGAC-GCAATGGTGTCTAAGAATGATCATA 414 ||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct 313 --CCATTGAATGTTGCGGTGATAAGAGTGACGACTACAATGGTGTCTAAGAATGATCATA 370 Query 415 TCGAGACTTTATTCAATTCAATCCAACTAGTTAAAGATGTTGTTCTTCTTCCGATTGAGC 474 |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 371 TCGAGACTTTCTTCAATTCAATCCAAGTAGTTAAAGA---TGTTCTTCTTCCGATTGAGC 427 Query 475 TTGGTGTGAAAAAGGCGGCAAGAGATATTGAAAATTGTTGGATAAGCAAAGAAAGGGATC 534 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 428 TCGGTGTGAAAAAGGCGGCAAGAGACATTGAAAATTGTTGGATAAGCAAAGAAAGGGATC 487 Query 535 TAGGTCTTGTTTTCAGATCATCTGGAAGAAACAGGAAGAAGCGGA-TTGTTGCTACTCCT 593 ||||||||||||| ||||||||||||||||| ||||||||||||| ||| ||||| |||| Sbjct 488 TAGGTCTTGTTTTGAGATCATCTGGAAGAAATAGGAAGAAGCGGATTTG-TGCTAGTCCT 546 Query 594 GAATTTGACGACAATGCTACTAATAATGTTCAGTGTGTGGTGGTTACTGATGAGAGAAAG 653 |||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||| Sbjct 547 GAATTTGACGACAATGCTACTAATAATGTTCA--GTGT-GTGGTAAGTGATGAGAGAAAG 603 Query 654 AAAGGTTTGTCTATCAAGAAGATCCCTGTGAAGTCACTCTTTGGTATGTTTTCTCCCAAT 713 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 604 AAAGGTTTGTCTATC---AAGATCCCTGTGAAGTCACTCTTTGGTATGTTTTCTCCGAAT 660 Query 714 TTAGTC-AGTGAGAAGTTGAGTCGTGGAAATGATGTGGTGGTGGCGAAGAAAGATAAGTC 772 |||| | ||||| |||||||||||| ||||||| |||||||||| ||||||||||||||| Sbjct 661 TTAG-CGAGTGACAAGTTGAGTCGTAGAAATGAGGTGGTGGTGGTGAAGAAAGATAAGTC 719 Query 773 TTTGGAGAAGAAAGATGATGATTCTTGTACTGATTGCTTCAAGTTTGCGATGACTTGGTC 832 ||| | | ||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 720 TTT-G-G-AGAAAGACGATGATTCTTGTACCAATTGCTTCAAGTTTGCGATGACTTGGTC 776 Query 833 TTTGTTGGTTAGTGGCTTTGTTCATGCTTTTCCTATTCCTTTTAAAATTGGTAAGAAGAG 892 ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 777 TTTGTTGGTTAGTGGCTTTGTTCATGCTTTTCCTATTCCTTTTAAGATAGGTAAAAAGAG 836 Query 893 GATTCATAAGATGGGGGATGATGAGAACAGTCTACGTAAACACGGCCTTAAATCAAAGGC 952 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 GATTCACAAAATGGGGGATGATGAGAACAGTCTACGTAAACACGGCCTTAAATCAAAGGC 896 Query 953 GGCATTTGTGAGTCGGAAAGAAGTGAGGTGTCAGTCAGTTGAATCTGTAGAAAAGGAAGG 1012 ||||||||| | |||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 897 GGCATTTGTAAATCGGAAAGAAGTGAGGCGTCAGTCAGTTGAATCTGCAGAAAAGGAAGG 956 Query 1013 GAACCCTTTTTCGATTGAATGCGCTGTTGGTTTTGTTGTTGAAATGTTGGCTCAGAATCT 1072 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 GAACCCTTTTTCGATTGAATGCGCTGTTGGTTTTGTTGTTGAAATGTTGGCTCAGAATCT 1016 Query 1073 CCAGAAGCTGGACCAGTTTATACAGGATAGTTCAGAGAATGAATCTTGTTGTTCCAAGGA 1132 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 CCAGAAGCTGGACCAATTCATACAGGATAGTTCAGAGAATGAATCTTGTTGTTCCAAGGA 1076 Query 1133 AGCTAGTTCTAATGATAGTCCACTTATCTTTAACATCTGGGAGGCTAGAAAACTCGACGT 1192 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1077 AGCTAGTCCTAATGATGGTCCACTTATCTTTAACATCTGGGAGGCTAGAAAACTTGACGT 1136 Query 1193 AAATGGATTCCTCGGGAACCTGATGTTTGCCAGAGTTGGAGATGTGGCGTCAGGTATAGG 1252 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 AAATGGATTCCTTGGGAACCTGATGTTTGCCAGAGTTGGAGATGTGGCGTCAGGTATAGG 1196 Query 1253 TGGCCTGACATCTCACATAAGTGAAGATGGTGATGAAAGTAATGTCAGTACTGCTGGTAA 1312 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1197 TGGCCTGACATCTCACGTAAGTGAAGATGGTGATGAAAGTAATGTCAGTACTACTGGTAA 1256 Query 1313 GGAGGAAAGTGCAGTTGATTCTCCGCAGAACTTGGCAACTGGACTATTGAGTATACCTTT 1372 |||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| Sbjct 1257 GGAGGAAAGTGCAGTTGATTCTCCACAGAACCTGGCAACTGGACTACTGAGTATACCTTT 1316 Query 1373 ATCAAATGTAGAGCGCTTAAAATCCACACTGTCCACAATTTCACTGACGGAACTTATTGA 1432 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1317 ATCAAATGTAGAGCGCTTAAAATCCACACTGTCCACGATTTCACTGACGGAACTTATTGA 1376 Query 1433 ACTTTTACCACAATTAGGACGACCTTCAAGAGACCATCCAGACAAGAAAAAACTAATTTC 1492 |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 1377 GCTTTTACCACAATTAGGACGGCCATCAAGAGACCATCCAGACAAGAAAAAACTGATTTC 1436 Query 1493 TGTTCAGGATTTTTTCAGATACACCGAGTCTGAAGGCAGGAGGTTCTTTGAAGAATTAGA 1552 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1437 TGTTCAGGATTTTTTCAGATACACAGAGTCTGAAGGCAGGAGGTTCTTTGAAGAGTTAGA 1496 Query 1553 TAGAGATGGTGATGGCAAAGTAACTTTGGAGGATCTGGAAATTGCAATGAGGAGAAGAAA 1612 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1497 TAGAGATGGTGATGGCAAAGTAACTTTGGAAGATCTGGAAATTGCAATGAGGAGAAGAAA 1556 Query 1613 ATTGCCCAGAAGATACGCCAAGGAATTTATGCGACGAGCTAGGAGTCATCTTTTCTCGAA 1672 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1557 GTTGCCCAGAAGATACGCCAAGGAATTTATGCGACGAGCTAGAAGTCATCTTTTCTCGAA 1616 Query 1673 ATCGTTTGGTTGGAAGCAATTTTTGTCCTTGATGGAACAGAAGGAGCCAACCATCCTCCG 1732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1617 ATCGTTTGGTTGGAAGCAATTTTTGTCCTTGATGGAACAGAAGGAGCCAACCATCCTCCG 1676 Query 1733 TGCCTATACTTCTCTCTGCTTGACCAAGTCTGGTACTCTTAAGAAAAGTGAGATATTGGC 1792 |||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| Sbjct 1677 TGCCTATACTTCTCTCTGTTTGACCAAGTCTGGTACTCTTCAGAAGAGTGAGATATTGGC 1736 Query 1793 ATCACTAAATAACGCAGGACTTCCTGCTAATGAAGAAAATGCTATAGCCATGATGAGATT 1852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1737 ATCACTAAATAACGCAGGACTTCCTGCTAATGAAGAAAATGCTATAGCCATGATGAGATT 1796 Query 1853 TTTGAAGGCTGATACCGAGGAGTCTATCTCATACGGACATTTCCGTAATTTCATGGTTTT 1912 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1797 TTTGAAGGCTGATACCGAGGAGTCTATCTCATACGGACATTTCCGTAATTTCATGGTGTT 1856 Query 1913 GCTGCCATATGAGCGCTTACAAGATGATCCTCGTAACATCTGGTTTGAAGCTGCGACTGT 1972 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1857 GCTGCCATATGAGCGGTTACAAGATGATCCTCGTAACATCTGGTTTGAAGCTGCGACTGT 1916 Query 1973 TGTTGCTGTTGCACCCCCTGTGGCCTTACCTGCTGGAGATGTTCTAAAATCTGCATTAGC 2032 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1917 TGTTGCTGTTGCACCTCCTGTGGCCTTACCTGCTGGAGATGTTCTAAAATCTGCATTAGC 1976 Query 2033 GGGAGGGCTTGCCTCTGCTCTCTCCACTTCCTTAATGCATCCGATTGACACAATCAAGAC 2092 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1977 AGGAGGGCTTGCCTCTGCTCTCTCCACCTCCTTAATGCATCCGATTGACACAATCAAGAC 2036 Query 2093 ACGTGTGCAAGCATCAACCTTGTCATTTCCTGAAGTAATAGCCAAGCTTCCAGAGATTGG 2152 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2037 ACGTGTGCAAGCATCAACCTTGTCATTTCCTGAAGTAATAGCGAAGCTTCCAGAGATTGG 2096 Query 2153 TGTCCGGGGAGTGTATAGGGGTTCTATTCCAGCAATTCTTGGACAATTTTCAAGCCATGG 2212 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2097 TGTGCGGGGAGTGTATAGGGGTTCTATTCCAGCAATTCTTGGACAATTTTCAAGCCATGG 2156 Query 2213 CCTGCGGACAGGAATATTCGAAGCAAGCAAACTTGTGTTGATCAATTTTGCTCCCAATCT 2272 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2157 CCTGCGAACAGGAATATTCGAAGCAAGCAAACTTGTGTTGATCAATTTTGCTCCCAATCT 2216 Query 2273 CCCAGAAATTCAGGTTCAATCGATTGCATCATTCTGCAGCACACTATTAGGCACAGCTGT 2332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2217 CCCAGAAATTCAGGTTCAATCGATTGCATCATTCTGCAGCACACTATTAGGCACAGCTGT 2276 Query 2333 GCGGATTCCATGTGAGGTGCTGAAGCAACGGTTGCAGGCTGGCATGTTTAACAATGTAGG 2392 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 2277 GCGGATTCCATGTGAGGTGCTGAAGCAACGGTTGCAGGCCGGCATGTTTAATAATGTAGG 2336 Query 2393 GGAAGCCATTGTCGGGACGTGGAAGCAAGATGGTCCAAGTGGCTTTTTCCGTGGGACAGG 2452 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2337 GGAAGCCATTGTAGGGACGTGGAAGCAAGATGGTCCAAGTGGCTTTTTCCGTGGGACAGG 2396 Query 2453 CGCAACTCTTTGCCGCGAAGTTCCACTATACGTTGTTGGCATGGGACTGTATGCAGAGTC 2512 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2397 CGCAACTCTTTGCCGTGAAGTTCCACTATACGTTGTTGGCATGGGACTGTATGCAGAGTC 2456 Query 2513 CAAAAAGATGGTGGCGCAAGCTCTGGGAAGAGAACTGGAGGCATGGGAGACAATAGCGGT 2572 ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 2457 CAAAAAGATGGTGGCGCAAGCGCTGGGAAGAGAACTCGAGGCATGGGAGACAATAGCAGT 2516 Query 2573 TGGGGCGGTGTCAGGAGGTATTGCAGCAGTTGTAACAACCCCATTTGATGTGATGAAGAC 2632 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2517 TGGGGCGGTGTCAGGAGGTATAGCAGCAGTTGTAACAACCCCATTTGATGTGATGAAGAC 2576 Query 2633 GAGAATGATGACTGCAACGCCAGGGAGACCGATCTCAATGTCTATGGTTGTTGTATCGAT 2692 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| Sbjct 2577 GAGAATGATGACTGCAACACCAGGGAGACCGATCTCAATGTCGATGGTTGTTGTCTCGAT 2636 Query 2693 TCTGCGTAATGAGGGACCGCTAGGTTTGTTCAAAGGAGCAGTCCCGAGGTTCTTCTGGGT 2752 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2637 TCTGCGTAATGAGGGACCGCTAGGTTTGTTCAAAGGAGCAGTCCCGAGGTTCTTCTGGGT 2696 Query 2753 GGCTCCTCTAGGTGCTATGAACTTTGCTGGGTACGAACTAGCCAAGAAAGCTATGCAGAA 2812 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2697 GGCTCCTCTAGGTGCTATGAACTTTGCTGGCTACGAACTAGCCAAGAAAGCTATGCAGAA 2756 Query 2813 GAACGAAGATGCAGTGCTAGCGGATCAGCTTGGTCAGAAGAAGCTTTGCTAATGGGATTT 2872 |||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 2757 GAACGAGGATGCTGTGCTAGCAGATCAGCTTGGTCAGAAGAAGCTTTGCTAATGCGATTT 2816 Query 2873 TACTTTGCTTTGCT--GCT---ACGAAGTTTTTTGGGGGCAGCTTAAGCCGGAGACTCAC 2927 ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | Sbjct 2817 CACTTTGCTTTGCTTTGCTGCTACGAAGTTTTTTGGGGGCAGCTTAAGCCGGAGACTCTC 2876 Query 2928 CTCTTTTGTTAAAAGCTACTTTGCAAAATTTTGACaaaaaaaaaaGGGTTCATTGTTTTG 2987 |||| |||||||| ||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 2877 CTCTGTTGTTAAATGCTACTTTGCAAATTTTTGACAAAAAAAAAAG--TTCATTGTTTTG 2934 Query 2988 TTGTGCATTGAGGACAGTTT 3007 |||||||||||||||||||| Sbjct 2935 TTGTGCATTGAGGACAGTTT 2954 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117660766805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5