BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35830.2 Length=788 Score E Sequences producing significant alignments: (Bits) Value Ahg934209 jgi|Araly1|934209|scaffold_402197.1 682 0.0 > Ahg934209 jgi|Araly1|934209|scaffold_402197.1 Length=601 Score = 682 bits (369), Expect = 0.0 Identities = 503/567 (89%), Gaps = 11/567 (2%) Strand=Plus/Plus Query 97 TTCAACGATGGCGAAATCTCCGGTGGAAGTGAATTTGATTC-CTATCGAAGCTACTCCGG 155 ||| || |||||||||||||||||||||||||| ||| || |||||||||||||||||| Sbjct 15 TTC-ACAATGGCGAAATCTCCGGTGGAAGTGAAACTGA-TCTCTATCGAAGCTACTCCGG 72 Query 156 AGAAC-TTCGCAGAGTATGGTCAAGTCATTGAAGCCTCTCGTGATGGTG-CTGGTTTCGG 213 || || ||||| || ||||||||| |||| |||||||| |||||||||| || ||| || Sbjct 73 AG-ACTTTCGCGGACTATGGTCAAATCATCGAAGCCTCCCGTGATGGTGCCT-CTTTTGG 130 Query 214 TCCCCACGACGCTCAACTAGATCTCTCTAGAGGAACCCCACGGCTCTATATACTTAGGCT 273 |||| ||||||||||| |||||||||| ||||||||||||||| |||||||||| |||| Sbjct 131 TCCCGACGACGCTCAATTAGATCTCTCCAGAGGAACCCCACGGTTCTATATACTCCGGCT 190 Query 274 GAAAGAAACACCCTTAGGGTTTTTCAAGATCACACATCACGCAAAGGTGACACAGTGTCT 333 | ||| || | |||||||||||| ||| |||||| |||||||||| |||||||||||||| Sbjct 191 GGAAGGAAGATCCTTAGGGTTTTCCAACATCACATATCACGCAAATGTGACACAGTGTCT 250 Query 334 AGGATCAATAGGAGGTGATGTTTGGTATATGGGAGTGGCTAAGCCGTCTCTTATTGAAGA 393 |||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||| Sbjct 251 AGGATCAATAGGAGGTCATGTTTGGTATCTTGGAGTAGCTAAGCCGTCTCTTATTGAAGA 310 Query 394 TGATGACGATGATGGAAGGAGCGTAGATACAGTAAAATCAAAGTCTGGTCACTTATACAT 453 |||||| | | |||||||||| |||||| ||||| ||||||||||||| ||||| ||||| Sbjct 311 TGATGATGGTAATGGAAGGAGAGTAGATGCAGTAGAATCAAAGTCTGGCCACTTGTACAT 370 Query 454 TCCACCTG-AGGTGGAAGAGATTCGCGTCTTCAGGTTCTCGGGACCAAAGTTTGTGAAAC 512 ||| |||| || ||||||||||||||||||||||| |||||||||| |||||||| |||| Sbjct 371 TCCTCCTGCAG-TGGAAGAGATTCGCGTCTTCAGGATCTCGGGACCCAAGTTTGTTAAAC 429 Query 513 TGCA-CCGTGGTACATGGCATGCTGGACCCTTGTTTAGTGGCAGCTCCTTCATGGATTTC 571 | || ||| ||||||||||||||||||||||||||||| | |||||||| |||||||||| Sbjct 430 T-CAACCGCGGTACATGGCATGCTGGACCCTTGTTTAGAGACAGCTCCTCCATGGATTTC 488 Query 572 TACAACTTAGAGCTCAGCAACACAAATGTGGTGGATCACACGTCACATGATTTCACCAAG 631 |||||||||||||||| ||||||||||| ||||||||||||| | |||||||||| ||| Sbjct 489 TACAACTTAGAGCTCACCAACACAAATGAGGTGGATCACACGACGCATGATTTCAAGAAG 548 Query 632 AATAATGGAGTCAGCTTCGGATTTGAC 658 ||||||||||||| || | |||||||| Sbjct 549 AATAATGGAGTCATCTACCGATTTGAC 575 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29087785671 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5