BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35840.1 Length=1542 Score E Sequences producing significant alignments: (Bits) Value Ahg934210 jgi|Araly1|934210|scaffold_402198.1 2025 0.0 Ahg914277 jgi|Araly1|914277|Al_scaffold_0001_4531 1230 0.0 > Ahg934210 jgi|Araly1|934210|scaffold_402198.1 Length=1310 Score = 2025 bits (1096), Expect = 0.0 Identities = 1223/1284 (95%), Gaps = 10/1284 (1%) Strand=Plus/Plus Query 37 TAGCAATCATGGAGC-GTCTAACATCTCCTCCTCGTTTGATGATTGTCTCTGATCTTGAT 95 ||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||| Sbjct 13 TAGCAATCATGGAGCGGT-TAACATCTCCTCCTCGTCTGATGATTGTCTCGGATCTTGAT 71 Query 96 CATACTATGGTTGATCATCATGATCCTGAGAATCTATCTCTGCTGAGATTCAATTCGTTG 155 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 72 CATACTATGGTTGATCATCATGATCCTGAGAATCTCTCTCTGTTGAGATTCAATTCGTTG 131 Query 156 TGGGAACACGCTTATCGCCATGACTCTCTTCTTGTGTTTTCTACGGGAAGATCACCGACA 215 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 132 TGGGAACACGCTTATCGCCATGACTCTCTTCTTGTGTTCTCTACGGGAAGATCACCAACA 191 Query 216 TTGTATAAAGAACTCAGAAAGGAGAAACCTTTG-TTGACCCCTGATATTACCATTATGTC 274 |||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||| Sbjct 192 TTGTATAAAGAATTGAGAAAGGAGAAACCTTTGCTT-ACCCCTGATATTACCATTATGTC 250 Query 275 TGTAGGAACTGAGATTACTTATGGTAACTCTATGGTTCCTGATCATGGTTGGGTTGAGGC 334 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 251 TGTAGGAACTGAGATTATTTATGGTAACTCTATGGTTCCTGATCATGGTTGGGTTGAGAC 310 Query 335 TCTGAACAATAAATGGGATTTGGGTATTGTCAAACAAGAAGCTAGCAACTTCCCTGAGTT 394 | |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || Sbjct 311 TTTGAACAATAAATGGGATTTGGGTATTGTCAAAGAAGAAGCTAGCAAGTTCCCTGAATT 370 Query 395 AAAGCTTCAGGCAGAAACTGAGCAGAGGCCACACAAGGTTAGCTTTTATGTTGAAAAGAG 454 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 371 AAAGCTTCAGGCAGAAACTGAGCAGAGGCCACATAAGGTTAGCTTTTATGTTGACAAGAG 430 Query 455 TAAGGCTCAGGAAGTTACTAAGGAGCTATCACAGAGGTTCCTGAAACGTGGGCTGGATGT 514 |||||| |||||||| |||||||||||||||||| |||||||||||| |||| ||||||| Sbjct 431 TAAGGCCCAGGAAGTGACTAAGGAGCTATCACAGCGGTTCCTGAAACATGGGTTGGATGT 490 Query 515 CAAAATAATTTACAGTGGAGGTATGGATTTGGATATTTTACCACAAGGTGCCGGAAAGGG 574 ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 491 CAAGATAATTTACAGTGGAGGCATGGATTTGGATATTTTACCACAAGGTGCTGGAAAGGG 550 Query 575 ACAAGCGCTTGCATATCTGCTGAAGAAACTGAAGACTGAGGGGAAACTCCCTGTCAATAC 634 ||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| Sbjct 551 ACAAGCGCTTGCATATCTGCTGAAGAAGCTAAAGACTGAAGGGAAACTCCCTGTCAATAC 610 Query 635 TCTTGCTTGTGGCGACTCTGGGAATGATGCTGAGCTGTTTAGTATTCCCGATGTTTATGG 694 |||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| Sbjct 611 TCTTGCTTGTGGCGACTCTGGGAACGATGCTGAACTGTTTAGCATTCCGGATGTTTATGG 670 Query 695 TGTTATGGTAAGCAATGCTCAAGAAGAGCTGTTGAAGTGGCATGCTGAAAATGCAAAAGA 754 ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 671 TGTCATGGTAAGCAATGCTCAGGAAGAGCTGTTGAAGTGGCATGCTGAGAATGCAAAAGA 730 Query 755 CAACCCTAAGGTAATCCATGCAAAGGAGAGGTGTGCAGGTGGGATTATACAAGCCATTGG 814 |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 731 CAACCCGAAGGTAATCCATGCAAAGGAGAGGTGCGCGGGTGGGATTATACAAGCCATTGG 790 Query 815 TCACTTCAAGCTTGGTCCGAACCTTTCTCCAAGAGATGTCTCTGA-TTTCTTAGAGAT-C 872 |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| | | Sbjct 791 TCACTTCAAGCTTGGTCCAAACCTTTCTCCAAGAGATGTCTCTGACTTT-TTAGAG-TGC 848 Query 873 AAGGTGGAGAATGTGAACCCTGGTCACGAGGTTGTGAAGttttttttGTTCTACGAGAGA 932 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 849 AAGGTGGAGAATGTGAACCCCGGTCACGAGGTTGTGAAGTTTTTCTTGTTCTACGAGAGA 908 Query 933 TGGAGACGGGGCGAGGTTGAGAACTCTGAGGCATACACAGCAAGCCTCAAAGCTTCAGT- 991 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 909 TGGAGACGGGGCGAGGTTGAGAACTCTGAGGCATACACAGCAAGCCTCAAAGCTTCA-TC 967 Query 992 TCACCCCGGTGGTGTGTTTGTCCATCCATCTGGTACTGAAAAATCTCTGAGAGATACCAT 1051 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 968 TCACCCCGGTGGTGTGTTCGTCCATCCATCTGGTACTGAAAAATCTCTGAGAGATACCAT 1027 Query 1052 CGATGAGCTGCGCAAGTACCATGGAGACAAACAAGGGAAGAAGTTTCGCGTTTGGGCAGA 1111 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1028 TGATGAGCTGCGCAAGTACCATGGAGACAAACAAGGGAAGAAGTTTCGGGTTTGGGCAGA 1087 Query 1112 TCAAGTCCTGGCAACAGACACTACTCCTGGGACATGGATAGTAAAGCTTGATAAATGGGA 1171 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1088 TCAAGTCCTGGCAACAGACACTACCCCTGGGACATGGATAGTAAAGCTTGATAAATGGGA 1147 Query 1172 GCAAGATGGGGACGAACGAAGATGCTGCACAACAACTGTCAAATTCACCTCAAAGGAAGG 1231 |||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| Sbjct 1148 GCAAGATGGGGACGAACGCAGATGCTGCACAACGACTGTCAAATTCACCGCAAAGGAAGG 1207 Query 1232 GGAGGGATTGGTGTGGGAACATGTACAACAAACCTGGTCGAAAGAAACAATGGTGAAGGA 1291 ||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| Sbjct 1208 GGAAGGATTGGTGTGGGAACATGTACAACAAACCTGGTCGGAAGAATCAAAGGTGAAGGA 1267 Query 1292 TGATAGCAGCTGGATCATCTGAGT 1315 |||||||||||||||||||||||| Sbjct 1268 TGATAGCAGCTGGATCATCTGAGT 1291 > Ahg914277 jgi|Araly1|914277|Al_scaffold_0001_4531 Length=1275 Score = 1230 bits (666), Expect = 0.0 Identities = 1087/1289 (84%), Gaps = 34/1289 (3%) Strand=Plus/Plus Query 45 ATGGAGCGTCTAACATCTCCTCCTCGTTTGATGATTGTCTCTGATCTTGATC-ATACTAT 103 |||||||| ||||||||| |||||||| | ||||| ||||| |||||||| | | || || Sbjct 1 ATGGAGCGGCTAACATCTTCTCCTCGTCTAATGATAGTCTCAGATCTTGA-CGAAACAAT 59 Query 104 GGTTGATCATCAT---GATCCTGAGAATCTATCTCTGCTGAGATTCAATTCGTTGTGGGA 160 ||||||||||||| ||||| |||||||||||||| |||| || ||||| |||||||| Sbjct 60 GGTTGATCATCATAAAGATCCAGAGAATCTATCTCTATTGAGGTTTAATTCATTGTGGGA 119 Query 161 ACACGCTTATCGCCATGACTCTCTTCTTGTGTTT-TCTACGGGAAGATCACCGACATTGT 219 | |||||||||| || || ||||||||||| ||| || || |||||| ||| ||| ||| Sbjct 120 AGACGCTTATCGACACGATTCTCTTCTTGT-TTTCTCAACCGGAAGAGCACAAACAATGT 178 Query 220 ATAAAGAACTCAGAAAGGAGAAACCTTTGTTGACCCCTGATATTACCATTATGTCTGTAG 279 | ||| |||| ||||| ||||| |||||||| ||||||||| ||| |||| ||||||| Sbjct 179 ACAAAAAACTGAGAAAAGAGAAGCCTTTGTTAACCCCTGATGTTATTATTACATCTGTAG 238 Query 280 GAACTGAGATTACTTATGGTAACTCTATGGTTCCTGATCATGGTTGGGTTG-AGGCTCTG 338 ||||||||||| ||||||||||||| ||||||| |||| || |||||||| | || || Sbjct 239 GAACTGAGATTGCTTATGGTAACTCCATGGTTCTTGATGATAATTGGGTTGAAATCT-TG 297 Query 339 AACAATAAATGGGATTTG-GGTATTGTCAAACAAGAAGCTAGCAACTTCCCTGAGTTAAA 397 || || |||||||| | || || ||| || ||||| | ||||| ||||||||||||| Sbjct 298 AATAACAAATGGGA-CCGAGGAATCGTCGAAGAAGAAACCAGCAAGTTCCCTGAGTTAAC 356 Query 398 GCTTCAGGCAGAAACTGAGCAGAGGCCACACAAGGTTAGCTTTT-ATGTTGA-AAAGAGT 455 ||||||| |||||||| ||||||||||||||| |||| |||| | |||| ||| ||| Sbjct 357 TCTTCAGGGTGAAACTGAACAGAGGCCACACAAGCTTAG-TTTTAACATTGACAAA-AGT 414 Query 456 AAGGCTCAGGAAGTTACTAAGGAGCTATCACAGAGGTTCCTGAAACGTGGGCTGGATGTC 515 |||| | ||| ||| |||||||||||||| ||| |||| |||||| ||| ||||| || Sbjct 415 AAGGTTAAGGCAGTGACTAAGGAGCTATCTCAGCGGTTGGAGAAACGCGGGGTGGATATC 474 Query 516 AAAATAATTTACAGTGGAGGTATGGATTTGGATATTTTACCACAAGGTGCCGGAAAGGGA 575 || ||||||| ||||||||| | | ||| ||| |||||||| |||||| ||||||||| Sbjct 475 AAGATAATTTTCAGTGGAGGAAACGCTTTCGATGTTTTACCAAAAGGTGGAGGAAAGGGA 534 Query 576 CAAGCGCTTGCATATCTGCTGAAGAAACTGAAGACTGAGGGGAAACTCCCTGTCAATACT 635 ||||| ||||| |||||||| ||||| ||||||||||| || |||| |||||| || ||| Sbjct 535 CAAGCTCTTGCTTATCTGCTAAAGAAGCTGAAGACTGAAGGAAAACACCCTGTTAACACT 594 Query 636 CTTGCTTGTGGCGACTCTGGGAATGATGCTGAGCTGTTTAGTATTCCCGATGTTTATGGT 695 ||||||||||| |||||||| |||||| |||| || |||| |||||| ||||||||||| Sbjct 595 CTTGCTTGTGGGGACTCTGGAAATGATACTGAACTATTTACCATTCCCAATGTTTATGGT 654 Query 696 GTTATGGTAAGCAATGCTCAAGAAGAGCTGTTGAAGTGGCATGCTGAAAATGCAAAAGAC 755 || |||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||| Sbjct 655 GTCATGGTAAGCAATGCTCAAGAAGAGTTGTTGGAGTGGTATGCTGAAAATGCGAAAGAG 714 Query 756 AACCCTAAGGTAATCCATGCAAAGGAGAGGTGTGCAGGTGGGATTATACAAGCCATTGGT 815 || || || ||||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 715 AATCCAAACATAATCCACGCAAATGAGAGGTGTGCGGGTGGGATTATACAAGCCATTGGT 774 Query 816 CACTTCAAGCTTGGTCCGAACCTTTCTCCAAGAGATGTCTCTGATTTCTTAGAGAT-CAA 874 ||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||| ||| | ||| Sbjct 775 CACTTTAAGCTCGGTCCAAACCTATCTCCAAGAGATGTTTCTGACTTCTTGGAG-TGCAA 833 Query 875 GGTGGAGAATGTGAACCCTGGTCACGAGGTTGTGAAGttttttttGTTCTACGAGAGATG 934 || ||| ||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| Sbjct 834 GGCGGATAATGTGAACCCGGGTCATGAGGTTGTCAAGTTTTTCTTGTTCTACGAGAGATG 893 Query 935 GAGACGGGGCGAGGTTGAGAACTCTGAGGCATACACAGCAAGCCTCAAAGCTTCA-GTTC 993 |||||| || || |||||||||| |||| |||||||||||||||||||||||||| || | Sbjct 894 GAGACGAGGTGAAGTTGAGAACTGTGAGACATACACAGCAAGCCTCAAAGCTTCATGT-C 952 Query 994 ACCCCGGTGGTGTGTTTGTCCATCCATCTGGTACTGAAAAATCTCTGAGAGATACCATCG 1053 | || | |||||| ||||| |||||||||||| ||||| ||||| ||||| ||||| | Sbjct 953 ATCCTGCTGGTGTCTTTGTTCATCCATCTGGTGGAGAAAAGTCTCTCAGAGACACCATTG 1012 Query 1054 ATGAGCT-GCGCAAGTACCATGGAGACAA-ACAAGGGAAGAAGTTTCGCGTTTGGGCAGA 1111 ||||||| | | |||||| ||||||||| | |||||||||||||||| |||||| |||| Sbjct 1013 ATGAGCTTG-GAAAGTACTATGGAGACATGA-AAGGGAAGAAGTTTCGGGTTTGGACAGA 1070 Query 1112 TCAAGTCCTGGCAACAGACACTACTCCTGGGACATGGATAGTAAAGCTTGATAAATGGGA 1171 ||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 1071 TCAGGTCCTGGCAACTGACACAACTCCAGGGACTTGGATAGTAAAGCTTGATAAATGGGA 1130 Query 1172 GCAAGAT-GGGGACGA-ACGAAGATGCTGCACAACAACTGTCAAATTCACCTCAAAGGAA 1229 ||| ||| ||||| || | ||| ||||||||||||||| ||||||||||||||||||||| Sbjct 1131 GCA-GATAGGGGATGAGAGGAA-ATGCTGCACAACAACGGTCAAATTCACCTCAAAGGAA 1188 Query 1230 GGGGA-GGGATTGGTGTGGGAACATGTACAACAAACCTGGTCGAAAGAAACA-ATGGT-- 1285 || || ||| ||| ||||||||||||| || |||| |||||| | |||||| | | | Sbjct 1189 GGAGAAGGGTTTG-TGTGGGAACATGTGCAGCAAATATGGTCGGAGGAAACAGA-GATAA 1246 Query 1286 -GAAGGATGATAGCAGCTGGATCATCTGA 1313 |||||||||||||| ||||||||||||| Sbjct 1247 AGAAGGATGATAGCAACTGGATCATCTGA 1275 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57744811420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5