BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35860.1
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901436 jgi|Araly1|901436|Al_scaffold_0004_2086 2106 0.0
> Ahg901436 jgi|Araly1|901436|Al_scaffold_0004_2086
Length=1338
Score = 2106 bits (1140), Expect = 0.0
Identities = 1274/1340 (95%), Gaps = 4/1340 (0%)
Strand=Plus/Plus
Query 97 ATGGATTCCTCCTATGGCGCCACAAAGTTCCTTCTCCTCCTCTTCCTCACCACCTCCATT 156
||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||||
Sbjct 1 ATGGATTCCTCCTATGGCGTAACAAAGCTCCTCCTCCTCCTCCTCCTCACCACCTCCATT 60
Query 157 GCGACCGCATTACCCGATAACAAACCAGTACCGGGTCAAATAAACTCAAACTCAGTCCTC 216
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCCACCGCATTACCCGATAACAAACCCGTACCGGGTCAAATAAACTCAAACTCAGTCCTC 120
Query 217 GTAGCTCTCCTGGACTCTCACTACACAGAGCTAGCAGAACTAGTCGAAAAAGCTCTCCTT 276
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 121 GTAGCTCTCCTTGACTCTCACTACACAGAGCTAGCTGAACTAGTCGAGAAAGCCCTCCTT 180
Query 277 CTCCAGACCCTCGAAGAAGCAGTTGGTAAACACAACATCACAATCTTCGCACCACGCAAC 336
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 CTCCAAACCCTCGAAGAAGCAGTTGGTAAACACAACATCACAATCTTTGCACCACGCAAC 240
Query 337 GATGCCTTGGAACGAAACTTAGACCCACTCTTCAAATCTTTCTTGCTCGAACCAAGAAAC 396
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GATGCCTTAGAACGAAACTTAGACCCACTCTTCAAATCTTTCTTGCTTGAACCAAGAAAC 300
Query 397 CTCAAATCTTTACAATCTTTATTAATGTTCCACATTCTTCCTAAACGAATCACTTCTCCT 456
||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 301 CTCAAATCTCTACAATCTTTATTAATGTTTCACATTCTACCTAAACGAATCTCTTCTCCT 360
Query 457 CAATGGCCTTCTCTTTCTCATCACCACCGTACTCTCTCCAACGACCATCTCCACCTCACC 516
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAATGGCCTTCTCTTTCTCACCACCACCGTACTCTCTCCAACGACCATCTCCACCTCACC 420
Query 517 GTCGACGTCAACACTCTT-AAAGTAGATTCCGCTGAGATTATCCGACCCGATGACGTCAT 575
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCGACGTCAACACT-TTAAAAGTAGATTCCGCTGAGATTATCCGACCCGATGACGTCAT 479
Query 576 TAGACCCGATGGTATCATTCACGGCATCGAACGTCTTCTCATCCCTCGCTCTGTTCAAGA 635
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 480 TAGACCCGATGGTATCATTCACGGCATCGAACGTCTTCTCATCCCCCGCTCTGTTCAGGA 539
Query 636 AGATTTTAACCGCCGTCGTAGTCTCCGTTCAATCTCCGCCGTTATACCAGAAGGAGCTCC 695
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 AGATTTCAACCGCCGTCGTAGTCTCCGCTCAATCTCCGCCGTTATACCAGAAGGAGCTCC 599
Query 696 TGAGGTTGACCCTAGAACTCACCGTCTCAAGAAACCATCTCCCGCCGTTCCCGCCGGAGC 755
||| |||||||| |||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 600 TGAAGTTGACCCAAGAACTCACCGTCTCAAGAAACCAGCCCCCGCCGTCCCCGCCGGAGC 659
Query 756 TCCTCCGGTTCTTCCAATCTACGACGCTATGTCACCAGGTCCTTCCCTAGCTCCTGCTCC 815
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 660 TCCACCGGTTCTTCCAATCTACGACGCTATGTCACCAGGTCCTTCCCTAGCCCCGGCTCC 719
Query 816 AGCTCCCGGACCCGGTGGTCCACGTGGCCATTTCAACGGCGATGCTCAAGTTAAAGATTT 875
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 AGCTCCCGGACCTGGTGGTCCACGTGGCCATTTCAACGGCGAGGCTCAAGTTAAAGATTT 779
Query 876 CATCCACACTCTCTTGCATTACGGTGGCTACAACGAGATGGCTGATATACTCGTCAACTT 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 CATCCACACTCTCTTGCATTACGGTGGCTACAACGAGATGGCTGATATACTCGTCAATTT 839
Query 936 AACCTCTTTAGCCACTGAGATGGGTCGACTCGTGTCAGAAGGCTACGTTTTAACCGTTCT 995
||| ||||||||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct 840 AACATCTTTAGCCACTGAGATGGGTCGTCTTGTCTCTGAAGGCTACGTTTTAACCGTTCT 899
Query 996 TGCTCCTAACGACGAAGCCATGGCTAAGCTCACAACGGACCAGCTTAGCGAGCCAGGTGC 1055
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGCTCCTAACGACGAAGCCATGGCTAAGCTCACAACGGACCAGCTTAGCGAGCCAGGTGC 959
Query 1056 TCCTGAACAAATTATGTATTACCACATCATACCGGAGTATCAAACAGAGGAGAGTATGTA 1115
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCCTGAACAGATTATGTATTACCACATCATACCGGAGTATCAAACAGAGGAGAGTATGTA 1019
Query 1116 CAACGCTGTTCGGAGATTCGGAAAAGTGAAGTATGATTCATTGAGATTCCCACATAAAGT 1175
|||||||||||||||||| || ||||||||||| ||||| ||||| || ||||| |||||
Sbjct 1020 CAACGCTGTTCGGAGATTTGGGAAAGTGAAGTACGATTCTTTGAGGTTTCCACACAAAGT 1079
Query 1176 GTTGGCTCAAGAAGCTGATGGATCTGTCAAATTCGGACACGGTGATGGTTCAGCTTACTT 1235
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1080 GTTAGCTCAAGAAGCTGATGGATCTGTCAAATTCGGACACGGTGATGGCTCAGCTTACTT 1139
Query 1236 GTTTGATCCTGATATCTACACGGACGGTCGGATTTCAGTTCAGGGTATTGATGGAGTCTT 1295
|||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1140 ATTTGATCCTGATATTTACACCGACGGTCGGATTTCAGTTCAGGGTATTGACGGAGTCTT 1199
Query 1296 GTTCCCGA-AGGAGGAAACGCCGGCGACGGAGATTAAACCAGCTGCTCCGGTCGTTAAGA 1354
||||||| || |||||||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 1200 GTTCCCGGCAG-AGGAAACGCCAGCGACAGAGATTAAACCCGCGGCTCCGGTCGTTAAGA 1258
Query 1355 AAGTTTCTAAATCAAGAAGAGGTAAATTGATGGAGGTAGCTTGTAGAATGATGGGGTCAC 1414
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1259 AAGTTGCTAAATCAAGAAGAGGTAAATTGATGGAGGTAGCTTGTAGAATGATGGGTTCAC 1318
Query 1415 GGTTTATTCCGTGTCAGTGA 1434
||||||||||||||||||||
Sbjct 1319 GGTTTATTCCGTGTCAGTGA 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5