BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35880.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482558 jgi|Araly1|482558|fgenesh2_kg.4__1618__AT2G35880.1 2488 0.0
> Ahg482558 jgi|Araly1|482558|fgenesh2_kg.4__1618__AT2G35880.1
Length=1795
Score = 2488 bits (1347), Expect = 0.0
Identities = 1651/1793 (92%), Gaps = 40/1793 (2%)
Strand=Plus/Plus
Query 41 ACA-AGACTCGTCGctcttcgctttttcttctctctttctttctctt-GCCAGTAGTGTG 98
||| |||||||||||||||||||||||||||||||||||||| | || ||||||| |||
Sbjct 14 ACAGAGACTCGTCGCTCTTCGCTTTTTCTTCTCTCTTTCTTT-T-TTAGCCAGTA--GTG 69
Query 99 ATCTTACGAAGC--T-TTTAGTAGAG-AAAAAGCATATACGC--T-TTGTCTTTCTTAAT 151
|||||||||||| | |||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 70 ATCTTACGAAGCTTTCTTTAGTAGAGAAAAAAGCATATACGCTTTGTTGTCTTTCTTAAT 129
Query 152 -CGACTGATAAGTCCTTAGGATCAGATGGAACAAATGGGTGGCTACTCAAAACAACAAGG 210
||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 130 CCGACTGATAAGTCCTCAGGATCAGATGGAAC-AATGGGTGGCTCCTCAAAACAAGAAGG 188
Query 211 TCCATTTTTAGTTTGATTAAGGGATTTGGATCTGA--G--CTTACTTCATCAACTTTGTC 266
||||| |||||||||||| |||||||||||||||| | || | ||||||||| |||||
Sbjct 189 TCCATCTTTAGTTTGATTGAGGGATTTGGATCTGACTGAACTGAATTCATCAACGTTGTC 248
Query 267 GGAATATACATTTGCTTTGTGTGGATTTGGAAGTT-GT-CCCTGAATGGCGTCCGAGGAT 324
|| |||||||||||||||||||| |||||| | || | |||||||||||||||||||||
Sbjct 249 GG-ATATACATTTGCTTTGTGTGAATTTGG-ATTTCTTGCCCTGAATGGCGTCCGAGGAT 306
Query 325 TTGAATATTGTTGCGGAATCAAAGAAAGGGGAAGAGAATGTTATTGTTGATAATTCCAAG 384
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TTGAGTGTTGTTGCGGAATCAAAGAAAGGGGAAGAGAATGTTATTGTTGATAATTCCAAG 366
Query 385 GACATGAATAGACCTGAGAATCTTGACTTATCTACTGAGAAAACTGATACTGCCAATGAG 444
||||||| ||||||||||||||||||||||||||| |||||| |||||| || |||||||
Sbjct 367 GACATGACTAGACCTGAGAATCTTGACTTATCTACCGAGAAAGCTGATAATGTCAATGAG 426
Query 445 AATGGTCCAAAAGATGAAGCTTCTAAGCTGGTAAAGGAAGCAGACCTCCCTGAGTCTGGT 504
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 427 AATGTTCCAAAAGATGAAGCTTCTAAGCTGCCAAAGGAAGCAGACCTCCCTGAGTCTGGT 486
Query 505 ACTTCAGTGAAGAGTAAAACAGCTAAGGATAATAAACCTGTTAAGAGAAAGTCAGGGACG 564
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 487 ACTTCAGTGAAGAGTAAAACAGCTAAGGATAGTAAACCTGTTAAGAGAAAGTCAGGGACC 546
Query 565 TTTTCTCGGAGCCCGAGATTCATGTCTCAGAGCTCTTCATTTCCAACTAAAGGAGCTTAT 624
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 547 TTTTCTCGCAGCCCGAGATTCATGTCTCAGAGCTCTTCATTTCCAACCAAAGGAGCTTAT 606
Query 625 ACTGATATTACTAGAAAGAGCATTGATGCCACAACATCAAAGACTAGTCTTAAACCCGTC 684
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 607 ACTGATATTACTAGAAAGAGTATTGATGCAACAACATCAAAGACTAGTCTTAAACCCGTC 666
Query 685 GTTGCTGGTGGATCCAAACCAAAAGCCACTCCATCTTCA-AGCAGCGGTGTTTCCGCAAA 743
||||| ||||||||||||||||||||||||||||||| | ||||||||||||| | | ||
Sbjct 667 GTTGCAGGTGGATCCAAACCAAAAGCCACTCCATCTT-ATAGCAGCGGTGTTTTCACTAA 725
Query 744 GCGCACCAGTTTAGTATCTGCGCCTCTCAAAAAGCAAACTATGCCTGTGAAAACCATTTC 803
||||||| || |||||||||| || ||||||||||||||| |||| |||||| |||||||
Sbjct 726 GCGCACCGGTGTAGTATCTGCCCCCCTCAAAAAGCAAACTTTGCCGGTGAAACCCATTTC 785
Query 804 TAAGGATGCAGCTTCAGGCCCTACTTCCAAATTAGGAGATGAAGGTTCTAAATCCATCAA 863
|| |||| |||| |||||||||||||||||||||| |||||||||||||||| |||| ||
Sbjct 786 TAGGGATTCAGCGTCAGGCCCTACTTCCAAATTAGAAGATGAAGGTTCTAAACCCATTAA 845
Query 864 AGAAGAAACTGCGGGGAAGGATGTCGAGGAGGCTGGATCAACCACCGCTGTGGTGGCAGA 923
||||||||| |||||||| || | ||||| | | |||||||||||||||||||||||
Sbjct 846 AGAAGAAACGGCGGGGAAAGACATTGAGGAAACCAGTTCAACCACCGCTGTGGTGGCAGA 905
Query 924 TAAAGTATCTAACCCGTTGAAAGCTGAAATGGCAAGCAAGGACGACGAAGACACTCGTTC 983
|||||||||||| ||| |||||| |||||||||||||||||| || || || || |||||
Sbjct 906 TAAAGTATCTAAACCGATGAAAGTTGAAATGGCAAGCAAGGAAGATGAGGATACACGTTC 965
Query 984 AACTACCACTTCAACTTCTACACCTCGTGGGCGGAGAAGCAGTGTTGGATCGGCATCTGG 1043
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 966 AACTACCACTTCAACTTCTACACCTCGTGGGCGGAGAAGCAGTGTTGGGTCGGCATCTGG 1025
Query 1044 ATTTTCGTTCAGGTTGGAGGAACGGGCTGAAAAACGGAAGGAGTTTTATATGAAACTAGA 1103
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||
Sbjct 1026 ATTTTCGTTCAGGTTGGAGGAACGGGCTGAAAAAAGAAAAGAGTTTTATATGAAACTGGA 1085
Query 1104 AGAGAAGATCCATGCAAAGGAAGTAGAGAAGACCAATTTGCAGGCGAAATCAAAGGAGAG 1163
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1086 AGAGAAGATCCATGCAAAGGAAGTAGAGAAGACGAATTTGCAGGCGAAATCAAAGGAGAG 1145
Query 1164 CCAGGAAGAAGAGATCAAAAGGTTGAGGAAGAGCTTGACGTTCAAGGCTGGTCCCATGCC 1223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TCAGGAAGAAGAGATCAAAAGGTTGAGGAAGAGCTTGACGTTCAAGGCTGGTCCCATGCC 1205
Query 1224 CAGTTTCTACAAAGAACC-CCCACCTAAGGTTGAATTGAAGAAGATACCAACTACTCGTC 1282
||| ||||||||||| || ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1206 CAGCTTCTACAAAGAGCCTCCC-CCTAAGGTTGAATTAAAGAAGATACCAACTACTCGTC 1264
Query 1283 CTAAGTCTCCAAAGCTAGGACGCAGAAAGAGTAGCAGTGATGCAACAGGAGGTGAAGCCG 1342
|||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 1265 CTAAATCTCCAAAGTTAGGACGCAGAAAGAGTAGTAGCGATGCAACAGGAGGTGAAGCGG 1324
Query 1343 CTCCTCGCGTGACAAAACCAAAAGACTCATCATCATCTACAGTGAAGAAACCAATAACAA 1402
||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1325 CTCCTCGTGTGACGAAACCAAAAGACTCATCATCATCTACACTGAAGAAACCCATAACAA 1384
Query 1403 AGTCTCAGCCaaagcttgaaactcaagagaaatcagtgaaggccaaagaaaagaaaaaga 1462
|||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1385 AGTCTCAGTCAAAGCTTGAAACTCAAGAGAAGTCAGTGAAGGCGAAAGAAAAGAAAAAGG 1444
Query 1463 aagtgaagaaagaagaagcagagaagagaggagaagaagagaagGCTACTGC--C-GTGG 1519
|||||||||||||||||| ||||||||||||||| |||||||||||| || | | ||||
Sbjct 1445 AAGTGAAGAAAGAAGAAGTAGAGAAGAGAGGAGAGGAAGAGAAGGCTTCTCCTGCTGTGG 1504
Query 1520 CTGCGAAACCTGAAGAGCAGAAACCAAACTCCAATAACATCCAAGTGAAGGCTGAGATAA 1579
||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1505 CTGCGAAACCTGAAGAGAAGAAACCGAACTCCAACAACATCCAAGTGAAGGCTGAGATAA 1564
Query 1580 TGGCGAGTGAGGTTGTAGTGGGAGGCTGA----AGCAAAGAGAGCATTCAGCAGCGATGT 1635
|||| |||||||||| ||||||||||||| ||||||| ||||||| ||||||||| |
Sbjct 1565 TGGCAAGTGAGGTTGCAGTGGGAGGCTGATCTGAGCAAAGTGAGCATTTAGCAGCGATAT 1624
Query 1636 CTAATGTCTGCTTCtt-ttttt--CTTTCTTAAAGCATTAATGTGAATAGAGTTGTTGCA 1692
| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1625 CCAATGTCTGCTTCTTCTTTTTTTCTTTCTTAAAGCATTAATGTGAATAGAGTTGTTGCA 1684
Query 1693 TTGCGTCTACTTTTTTAAGAGTTTATACTTCATTCCTTCAGTTTATTTTTTGGAAAATTA 1752
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1685 TTGCGTCTACTTTTTTAAGAGTTTA--CTTCATTCCTTCAGTTTATTTTTTGGAAAATTA 1742
Query 1753 A-GCCTCGATTGCTTCTTAAGATGGTCTCAAATGTGTTGAACTCAAATATGTA 1804
| ||||| ||||||||||||||||||||| |||||||||| |||||| |||||
Sbjct 1743 AAGCCTCAATTGCTTCTTAAGATGGTCTCTAATGTGTTGAGCTCAAAAATGTA 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5