BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35940.1 Length=2706 Score E Sequences producing significant alignments: (Bits) Value Ahg482564 jgi|Araly1|482564|fgenesh2_kg.4__1624__AT2G35940.3 3801 0.0 > Ahg482564 jgi|Araly1|482564|fgenesh2_kg.4__1624__AT2G35940.3 Length=2911 Score = 3801 bits (2058), Expect = 0.0 Identities = 2356/2492 (95%), Gaps = 52/2492 (2%) Strand=Plus/Plus Query 228 TATCAATCCAGCTTGGTGAAAGAAG--G-TCAAGAATTGAAAGAGAATCAAAGAAAACGA 284 ||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 458 TATCAAT-CAGCTTGGTGAAAGAAGAAGATCAAGAATTGAAAGAGAATCAAAGAAAACGA 516 Query 285 CGTCGTTTCATTCGTGTGTAACAACTACTAAT-TA-T-A-CATAGATGGCTGCTTACTTT 340 | |||||||||||||||||||||| | | || || | | ||||||||||||||||||| Sbjct 517 CACCGTTTCATTCGTGTGTAACAAC-AGT-ATATACTAATTATAGATGGCTGCTTACTTT 574 Query 341 CACGGAAACCCACCGGAGATCTCTGCCGGATCCGACGGTGGTCTTCAAACGTTGATCCTC 400 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 575 CACGGAAACCCACCGGAGATCTCAGCCGGATCCGACGGTGGTCTGCAAACGTTGATCCTC 634 Query 401 ATGAATCCAACTACTTACGTTCAGTACACCcaacaagacaacgactcgaacaacaacaac 460 ||||||||||||||||||||||| ||||| | |||||||||||||| Sbjct 635 ATGAATCCAACTACTTACGTTCAATACACTCGACAAGACAACGACT-------------- 680 Query 461 aacagcaacaatagcaacaacaacaacacaaacacaaacacaaacaacaacaacaGTAGT 520 | | ||| | | |||||||||| | || ||| | ||||| | ||||||||||||||| Sbjct 681 --C-G-AAC-A-A-CAACAACAAC-A-AC-AACTCGAACAC--A-AACAACAACAGTAGT 727 Query 521 TTCGTTTTCCTCGATTCCCACGCGCCGCAGCCAAACGCGAGCCAGCAGTTCGTCGGAATA 580 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 728 TTCGTTTTCCTCGATTCCCACGCGCCGCAGCCTAACGCGAGCCAGCAGTTCGTCGGAATA 787 Query 581 CCACTCTCAGGTCACGAAGCTGCTTCCATTACAGCCGCCGACAACATCTCCGTACTTCAC 640 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 788 CCACTCTCCGGTCACGAAGCCGCTTCCATTACAGCCGCCGACAACATCTCCGTACTTCAC 847 Query 641 GGTTATCCTCCGCGCGTGCAGTACAGTCTCTACGGTAGCCACCAAGTGGATCCCACTCAC 700 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 848 GGATACCCTCCGCGCGTGCAGTACAGTCTCTACGGTAGCCACCAAGTGGATCCCACTCAC 907 Query 701 CAGCAAGCCGCGTGTGAGACGCCACGCGCGCAGCAAGGCCTCTCTTTAACCCTCTCGTCT 760 |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 908 CAGCAAGCCGCGTGTGAGACGCCACGCGCGCAACAAGGCCTCTCTTTAACTCTCTCGTCA 967 Query 761 CAACAGCAGCAGCAACAGCAACATCATCAACAACACCAGCCTATTCACGTCGGATTCGGG 820 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 968 CAACAGCAGCAGCAACAGCAACATCATCAACAACACCAGCCTATCCACGTCGGGTTCGGG 1027 Query 821 TCCGGA-CATGGAGAAGATATCCGGGTCGGGTCTGGCTCTACAGGATCGGGGGTAACAAA 879 |||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1028 TCCGGACCA-GGAGAAGATATCCGGGTTGGGTCTGGTTCTACAGGATCGGGGGTAACAAA 1086 Query 880 CGGTATAGCTAATCTTGTTAGCTCCAAGTACTTGAAGGCAGCACAAGAGCTTCTTGACGA 939 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1087 CGGTATAGCGAATCTTGTAAGCTCCAAGTACTTGAAGGCAGCACAAGAGCTTCTTGACGA 1146 Query 940 AGTAGTCAACGCTGATTCCGATGACATGAACGCTAAATCCCAACTATTCTCATCGAAAAA 999 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1147 AGTAGTCAACGCTGATTCCGATGACATGAACGCTAAATCCCAACTATTCTTATCGAAAAA 1206 Query 1000 GGGTAGTTGCGGAAATGATAAACCTGTCGGAGAATCATCGGCCGGCGCTGGAGGAGAAGG 1059 ||| ||| ||||||| ||||| ||||||||||||| || |||||||||||||||||||| Sbjct 1207 GGGGAGTAGCGGAAACGATAAGGCTGTCGGAGAATCCTCCGCCGGCGCTGGAGGAGAAGG 1266 Query 1060 TTCCGGTGGCGGAGCAGAAGCAGCCGGGAAACGTCCGGTGGAGCTAGGCACGGCAGAGAG 1119 |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 1267 TTCCGGTGGCGGAGGAGAAGCAGCTGGGAAACGTACGGTGGAGCTAGGCACGGCAGAGAG 1326 Query 1120 ACAAGAAATACAGATGAAGAAAGCAAAACTTAGTAACATGCTTCATGAGGTGGAGCAGAG 1179 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1327 ACAAGAAATACAGATGAAGAAAGCAAAGCTGAGTAACATGCTTCATGAGGTGGAGCAGAG 1386 Query 1180 ATATAGACAGTACCACCAGCAGATGCAGATGGTGATCTCTTCGTTCGAGCAAGCGGCAGG 1239 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1387 ATATAGACAGTACCACCAGCAGATGCAGATGGTGATCTCGTCGTTCGAGCAAGCGGCAGG 1446 Query 1240 GATAGGATCAGCGAAGTCATACACGTCGCTAGCATTGAAAACCATATCAAGACAGTTCCG 1299 |||||| |||||||| ||||||||||| || ||| |||| |||||||||||||||||||| Sbjct 1447 GATAGGGTCAGCGAAATCATACACGTCACTTGCACTGAAGACCATATCAAGACAGTTCCG 1506 Query 1300 TTGCTTGAAAGAGGCGATCGCTGGTCAGATAAAAGCGGCCAACAAGAGTCTTGGGGAGGA 1359 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1507 GTGCTTGAAAGAGGCCATCGCGGGTCAGATAAAAGCGGCCAACAAGAGTCTTGGGGAGGA 1566 Query 1360 AGATTCAGTGTCTGGTGTTGGGAGGTTTGAGGGGTCGAGGCTCAAGTTCGTGGACCACCA 1419 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1567 AGATTCGGTGTCTGGTGTTGGAAGGTTTGAGGGGTCGAGGCTCAAGTTCGTGGACCATCA 1626 Query 1420 CTTGAGACAGCAAAGAGCTCTTCAACAACTGGGAATGATTCAACATCCTTCCAATAATGC 1479 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1627 CTTGAGACAGCAAAGAGCTCTTCAGCAGCTGGGAATGATTCAACATCCTTCCAATAATGC 1686 Query 1480 TTGGAGACCTCAACGTGGTCTCCCAGAACGAGCCGTCTCAGTTCTCCGTGCTTGGCTCTT 1539 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1687 TTGGAGACCTCAACGTGGTCTCCCCGAACGAGCCGTCTCAGTCCTCCGTGCTTGGCTCTT 1746 Query 1540 CGAACACTTTCTTCATCCATACCCTAAGGATTCGGACAAGCACATGCTAGCTAAGCAAAC 1599 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1747 CGAACACTTTCTTCACCCATACCCTAAGGATTCGGACAAGCACATGCTAGCCAAGCAAAC 1806 Query 1600 AGGACTCACTCGTAGCCAGGTGTCGAACTGGTTTATAAACGCGAGAGTTCGGTTATGGAA 1659 |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1807 AGGACTCACTCGGAGCCAGGTGTCGAACTGGTTCATAAACGCTAGAGTTCGGTTATGGAA 1866 Query 1660 ACCAATGGTGGAGGAGATGTACATGGAGGAAATGAAGGAGCAGGCAAAGAACATGGGATC 1719 |||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 1867 ACCAATGGTGGAAGAGATGTACATGGAGGAAATGAAGGAGCAGGGAAAAAACATGGGATC 1926 Query 1720 CATGGAAAAGACTCCTTTGGATCAAAGCAACGAAGATTCTGCTTCAAAGTCAACAAGTAA 1779 |||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 1927 CATGGAGAAGACTCCTCTGGATCAAAGCAACGAAGATTCTGCTTCTAAGTCAACAAGTAA 1986 Query 1780 CCAAGAAAAGAG-CCCAATGGCGGACACTAATTACCATATGAATCCCAATCACAACGGTG 1838 |||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1987 CCAAGAGAAGAGTCCC-ATGGCCGACACTAATTACCATATGAATCCCAATCACAACGGTG 2045 Query 1839 ACCTAGAAGGCGTCACTGGAATGCAAGGAAGCCCCAAGAGACTAAGAACCAGCGACGAGA 1898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2046 ACCTAGAAGGCGTCACTGGAATGCAAGGAAGCCCCAAGAGACTAAGAACCAGCGACGAGA 2105 Query 1899 CAATGATGCAGCCAATAAATGCGGATTTCAGCTCCAACGAGAAGCTCACGATGAAGATTC 1958 ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2106 CAACGATGCAGCCTATAAATGCGGATTTCAGTTCCAACGAGAAGCTCACGATGAAGATTC 2165 Query 1959 TAGAAGAACGGCAAGGGATAAGATCAGATGGTGGCTACCCTTTCATGGGTAATTTCGGGC 2018 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 2166 TAGAAGAACGGCAAGGGATAAGATCAGACGGTGGCTACCCTTTCATGGGGAATTTCGGGC 2225 Query 2019 AATACCAAATGGATGAGATGTCAAGATTTGATGTAGTCTCAGACCAGGAGCTCATGGCGC 2078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2226 AATACCAAATGGATGAGATGTCAAGATTTGATGTAGTCTCAGACCAGGAGCTCATGGCGC 2285 Query 2079 AAAGGTACTCAGGAAACAACAATGGCGTGTCCCTCACGTTAGGTTTACCTCATTGTGATA 2138 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 2286 AAAGGTACTCAGGAAACAACAATGGCGTGTCCCTCACGTTAGGTTTACCCCACTGTGATA 2345 Query 2139 GCTTGTCGTCCACGCACCATCAGGGTTTCATGCAGACCCACCATGGGATTCCTATAGGGA 2198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2346 GCTTGTCGTCCACGCACCATCAGGGTTTCATGCAGACCCACCATGGGATTCCTATAGGGA 2405 Query 2199 GAAGAGTGAAAATAGGAGAAACAGAGGAATATGGACCCGCCACCATCAATGGTGGTAGCT 2258 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2406 GAAGAGTGAAAATAGGAGAAACAGAGGAATATGGAGCCGCCACCATCAATGGTGGTAGCT 2465 Query 2259 CGA-CCACAACCGCACATTCATCAGCGGCAGCTGCCGCGGCTTACAATGGGATGAACATA 2317 | | |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2466 C-AGCCACAACCGCGCATTCATCAGCCGCAGCTGCCGCGGCTTACAATGGGATGAACATA 2524 Query 2318 CAGAACCAGAAGAGATATGTGGCTCAGTTATTGCCCGACTTCGTTGCATAAACCCATCTC 2377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2525 CAGAACCAGAAGAGATATGTGGCTCAGTTATTGCCCGACTTCGTTGCATAAACCCATCTC 2584 Query 2378 TCTAGAAGGAGAAACCGAAACAGGTTATTATATACGTTTCTAGTTTTTAATTAGTATATA 2437 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2585 TCTAGAAGGAGAAACCGAAACAGGTTATTATA--CGTTTCTAGTTTTTAATTAGTATATA 2642 Query 2438 GTTTCTCATACCATTGAACCAAAACAAAGAACAAAATTTAATTTTAGTCTTTGGTTATAT 2497 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2643 GTTTCTCATACCATTGAACCAAAACAAAGAACAAAATTTAATTTTAGTCTTTGGTTAAAT 2702 Query 2498 ATGGCCGACGGTTGTATATCGATTTTGTAAttttttttttt--CGTTTCTATTGGGGGAT 2555 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 2703 ATGGCCGACGGTTGTATATCGATTTTGTAATTTTTTTTTTTTTCGTTTTTATTGGGGGAT 2762 Query 2556 GGATAGGGTTATATATGTATATGGATTAGTTACGTGTAATAGCTTGCATTGGGTGTATAC 2615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2763 GGATAGGGTTATATATGTATATGGATTAGTTACGTGTAATAGCTTGCATTGGGTGTATAC 2822 Query 2616 CAAAATATATTTTTA-CTTTTATTACAATGTAATAATTAATAAGATAGTGAACTGATCTA 2674 |||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||| Sbjct 2823 CAAAATATTTTTTTTGCTTTTATTACAATGTAATAAT-AA---GATAGTGAACTGATCTA 2878 Query 2675 TCAAATATGGAATGATGATTACAGATTAGATC 2706 |||||||||||||| |||||||||||| |||| Sbjct 2879 TCAAATATGGAATGGTGATTACAGATTGGATC 2910 Score = 315 bits (170), Expect = 1e-84 Identities = 174/176 (99%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 63 attatttctcagctttttaaatgtattttatatttCCCCTTTGAGCAAGAAAAGAGTTGC 122 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATTATTTCTCAGCTTTTTTAATGTATTTTATATTTCCCCTTTGAGCAAGAAAAGAGTTGC 60 Query 123 AGAGATCTTTGAGTCTGACACAGAGACCAAACTCACATAGCAATCACACACATCTCCACA 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGAGATCTTTGAGTCTGACACAGAGACCAAACTCACATAGCAATCACACACATCTCCACA 120 Query 183 AACACAGCTTGAGATGATCATGAAACACGTGCATCCTCAGATCTCTATCAATCCAG 238 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 121 AACACAGCTTGAGATGATCATGAAACACGTGCATCATCAGATCTCTATCAATCCAG 176 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102081856600 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5