BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35960.1
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482567 jgi|Araly1|482567|fgenesh2_kg.4__1627__AT2G35960.1 1138 0.0
Ahg485614 jgi|Araly1|485614|fgenesh2_kg.5__1606__AT3G52470.1 468 4e-131
Ahg904048 jgi|Araly1|904048|Al_scaffold_0003_1176 278 7e-74
Ahg951862 jgi|Araly1|951862|scaffold_22200002.1 128 8e-29
> Ahg482567 jgi|Araly1|482567|fgenesh2_kg.4__1627__AT2G35960.1
Length=754
Score = 1138 bits (616), Expect = 0.0
Identities = 711/757 (94%), Gaps = 6/757 (1%)
Strand=Plus/Plus
Query 129 CTCACTTTCTCCATCACACATACATCTTCTCCATCCATTACACAACGAAGCATAGTGGCA 188
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCACTCTCTCCATCACACATACATCTTCTCCATCCATTACACAACGAAGCATAGTGGCA 60
Query 189 AACCCGTAAATACATAATACCAATGACGACCAAAGATTGCGGAAACCACGGCGGCGGCGG 248
|| ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 61 AAGCCGTAAATACATAATACCAAT---GTCCAAAGATTGCGGGAACCACGGCGGCGGCGG 117
Query 249 AGGAGGAGGAACCGCCAGTCGAATCTGCGGAGTAATCATCGGCTTCATCATCATCGTCTT 308
||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 118 CGGAGGAGGAACCGTCAGTCGAATCTGCGGAGCAATCATTGGCTTCATCATCATCGTCTT 177
Query 309 GATAACAATATTCCTCGTTTGGATAATCCTCCAACCGACAAAACCAAGATTCATCCTCCA 368
||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 178 GATAACAATCTTCCTCGTTTGGGTAATCCTCCAACCAACAAAACCAAGATTCATCCTCCA 237
Query 369 AGACGCCACCGTCTACGCCTTTAATCTCTCGCAGCCTAACCTCCTCACCTCAAACTTTCA 428
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 238 AGACGCCACCGTCTACGCCTTTAACCTCTCGCAACCTAACCTACTCACCTCAAACTTTCA 297
Query 429 GATCACGATCGCTTCACGTAACCGAAACTCAAGAATCGGAATCTACTACGACCGTCTTCA 488
|||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 298 GATCACAATCGCTTCACGTAACCGCAACTCCAGAATCGGAATCTACTACGACCGGCTTCA 357
Query 489 CGTCTACGCTACTTACCGGAACCAACAAATCACTCTACGTACAGCAATTCCTCCGACGTA 548
||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 358 CGTCTACGCTAGTTACCGGAACCAGCAAATCACTTTACGTACAGCCATTCCTCCGACGTA 417
Query 549 CCAAGGCCATAAAGAAGACAACGTTTGGTCTCCTTTCGTTTATGGAAACTCCGTCCCTAT 608
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 418 CCAAGGCCATAAAGAAGACAACGTTTGGTCTCCTTTTGTATACGGAAACTCCGTCCCTAT 477
Query 609 CGCTCCTTTCAACGCCGTGGCTCTCGGCGACGAGCAGAATCGTGGGTTTGTCACGTTGAT 668
||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 478 CGCTCCTTTCAACGCGGTGGCTCTTGGCGACGAGCAAAATCGCGGGTTTGTCACGTTGAT 537
Query 669 TATACGCGCCGATGGACGCGTGAGGTGGAAGGTCGGGACTCTTATTACAGGGAAGTATCA 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TATACGCGCCGATGGACGCGTGAGGTGGAAGGTCGGGACTCTTATTACAGGGAAGTATCA 597
Query 729 TCTCCATGTTCGTTGTCAGGCGTTCATAAATCTGGCTGATAAAGCCGCCGGAGTTCATGT 788
||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 TCTCCTTGTTCGTTGTCTCGCGTACATAAATCTGGCTGATAAAGCCGCCGGAGTTCATGT 657
Query 789 CGGCGAAAACGCCGTCAAGTACATGTTGATCAATAAGTGCAGTGTCAATGTTTAGTAGGT 848
||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 658 CGGCGAAAACGCCGTTAAGTACATGTTGGTCAATAAGTGCAGTGTCAATGTTTAGGAGGT 717
Query 849 AA-AAT-G-ACACAACTTTGACGCCGTCAATGTTTGC 882
|| || | ||||||||||||| |||| || ||||||
Sbjct 718 AATAAAAGGACACAACTTTGACACCGTTAAAGTTTGC 754
> Ahg485614 jgi|Araly1|485614|fgenesh2_kg.5__1606__AT3G52470.1
Length=912
Score = 468 bits (253), Expect = 4e-131
Identities = 511/634 (81%), Gaps = 23/634 (4%)
Strand=Plus/Plus
Query 220 AAAGATTGCGGAAACCACGGCGGCGGCGGAGGAGGAGGAACCG-CCAGTCGAATCTGCGG 278
||||||||||| ||||||||||| ||| | || || | ||| || | ||| |||||||
Sbjct 106 AAAGATTGCGGTAACCACGGCGGTGGC--A-AAGAAGCAGCCGTCC-GGCGACTCTGCGG 161
Query 279 AGTAATCATCGGCTTCATCATCATCG-TCTTGATAACAATATTCCTCGTTTGGATAATCC 337
| || |||| ||||||||| || | || | || || || ||||| |||||| | || |
Sbjct 162 CGCCATAATCGCCTTCATCATAATAGTTC-TAATCACCATCTTCCTAGTTTGGGTCATAC 220
Query 338 TCCA-ACCGACAAAACCAAGATTCATCCTCCAAGACGCCACCGTCTACGCCTTTAATCTC 396
| || || || || ||||||||| ||||||||||||||||||||| |||||| || |||
Sbjct 221 T-CAGGCCCACTAAGCCAAGATTCGTCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTC 279
Query 397 TCGCAGCCTAACCTCCTCACCTCAAACTTTCAGATCACGATCGCTTCACGTAACCGAAAC 456
|| || || ||||||||||| |||||||| || ||||| ||||| || ||||||| |||
Sbjct 280 TCTCAACCAAACCTCCTCACTTCAAACTTCCAAATCACAATCGCATCTCGTAACCCTAAC 339
Query 457 T-CAAGAATCGGAATCTACTACGACCGTCTTCACGTCTACGCTACTTACCGGAACCAACA 515
| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 340 TCCAAG-ATCGGAATCTACTACGACCGTCTTCACGTCTACGCTACGTACCGGAACCAACA 398
Query 516 AATCACTCTACGTACAGCAATTCCTCCGACGTACCAAGGCCATAAAGAAGACAACGTTTG 575
|||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||
Sbjct 399 GATCACTCTACGTACGGCGATTCCTCCGACGTATCAAGGCCACAAAGAAGACAACGTTTG 458
Query 576 GTCTCCTTTCGTTTATGGAAACTCCGTCCCTATCGCTCCTT-TCAACGCCGTGGCTCTCG 634
||| |||||||| || |||| | |||| || ||||| || | | ||| |||| ||| | |
Sbjct 459 GTCACCTTTCGTCTACGGAACCGCCGTTCCGATCGCACCGTAT-AACTCCGTCGCTTTGG 517
Query 635 GCGACGAGCA-GAATCGTGGGTTTGTCACG-TTGATTATACGCGCCGATGGACGCGTGAG 692
| || || || | |||||| || || | | ||||| |||||||||||||| | ||||||
Sbjct 518 GAGATGACCAAGG-TCGTGGATTCGT-AGGGTTGATGATACGCGCCGATGGGCACGTGAG 575
Query 693 GTGGAAGGTCGGGACTCTT-ATTACAGGGAAGTATCATCTCCATGTTCGTTGTCAGGCGT 751
||||| || |||||| || || || || || |||||| |||||||||| || | ||| |
Sbjct 576 ATGGAAAGTGGGGACT-TTGATCACCGGAAAATATCATATCCATGTTCGGTGCCCGGC-T 633
Query 752 T-CATAAATCT-GGCTGATAAAGCCGCCGGAGTTCATGTCGGCGAAAACGCCGTCAAGTA 809
| ||| ||||| || | ||||| || || |||| |||||| || |||||||| |||||
Sbjct 634 TACATCAATCTTGGAA-ACAAAGCTGCTGGTGTTCTTGTCGGTGATAACGCCGTTAAGTA 692
Query 810 CATGTTGATCAATAAGTGCAGTGTCAATGTTTAG 843
| |||||| | ||| |||||||| || ||||||
Sbjct 693 TACGTTGATTACTAAATGCAGTGTGAACGTTTAG 726
> Ahg904048 jgi|Araly1|904048|Al_scaffold_0003_1176
Length=609
Score = 278 bits (150), Expect = 7e-74
Identities = 415/539 (77%), Gaps = 34/539 (6%)
Strand=Plus/Plus
Query 291 CTTCATCATCATCGTCTTGATAACAATATTCCTCGTTTGGATAATCCTCCAACCGACAAA 350
||||||| ||||| |||| ||||||| ||||| ||||| ||| |||||||| ||||
Sbjct 51 CTTCATCTTCATCATCTTCCTAACAATCCTCCTCATTTGGGCAATTCTCCAACCTTCAAA 110
Query 351 ACCAAGATTCATCCTCCAAGACGCCACCGTCTACGCCTTTAATC-TCTC-G-CAG-CCT- 405
||| | ||| |||||||||||||||||||||||||||| || | |||| | || ||
Sbjct 111 GCCACGTTTCCTCCTCCAAGACGCCACCGTCTACGCCTTCAA-CGTCTCCGGCAATCCAC 169
Query 406 --AACCTCCTCACCTCAAACTTTCAGATCACGATCGCTTCACGTAACCGAAACT-CAAGA 462
|||||| ||||||| ||||| || ||||| || |||| || |||| ||| |||||
Sbjct 170 CGAACCTCATCACCTCCAACTTCCAAATCACTCTCTCTTCCCGGAACCCTAACGACAAGA 229
Query 463 ATCGGAATCTACTACGACCGTCTTCACGTCTACGCTACTTACCGGAACCAACAAATCACT 522
|||| | ||||||||||| ||| ||||||||||||||||||||| |||||| ||||||
Sbjct 230 -TCGGCGTTTACTACGACCGCCTTGACGTCTACGCTACTTACCGGAGCCAACAGATCACT 288
Query 523 CTACGTACAGCAATTCCTCCGACGTACCAAGGCCATAAAGAAGACAACGTTTGGTCTCC- 581
| || ||| |||| ||||| ||||| || || || ||||||| |||| | ||||| ||
Sbjct 289 TTCCGAACATCAATCCCTCCCACGTATCAGGGACACAAAGAAGTCAACATCTGGTCGCCG 348
Query 582 TTTCGTTTATGGAAACTCCGT-CCCTATCGCTCCTTTCAACGCCGT-GGCTCTCGGCGAC 639
||| || || |||| |||||| ||| ||||||||||| |||| ||| || ||||| ||||
Sbjct 349 TTT-GTCTACGGAACCTCCGTTCCC-ATCGCTCCTTTTAACGGCGTTGG-TCTCGACGAC 405
Query 640 GAGCA-GA-ATCGTGGGTT-TGTCACGTTGATTATACGCGCCGATGG-ACGCGTGAGGTG 695
|| | || | || | | | | | |||||| || || || ||||| | | || ||||
Sbjct 406 GATAAAGATAACG-GCGCCAT-T-ATGTTGATCATTCGTGCTGATGGTA-GAGTTCGGTG 461
Query 696 GAAGGTCGGGACTCTTATTACAGGGAAGTATCATCTCCATGTTC-GTTGTCAGGCGT-TC 753
|||||| |||||| |||| || |||||||||||||| |||| || | | ||||| |
Sbjct 462 GAAGGTTGGGACTTTTATCACCGGGAAGTATCATCTTTATGTGAAGT-GCCCGGCGTAT- 519
Query 754 ATAAA-T-CTGGCTGATAAAGCCGCCGGAGTTCATG-TCGGCGAAAACGCCGTCAAGTA 809
|| || | | || | ||||||| |||||||| || |||| || |||||||| |||||
Sbjct 520 ATTAACTTC-GG-TAATAAAGCTACCGGAGTT-ATCATCGGAGATAACGCCGTTAAGTA 575
> Ahg951862 jgi|Araly1|951862|scaffold_22200002.1
Length=515
Score = 128 bits (69), Expect = 8e-29
Identities = 163/207 (79%), Gaps = 12/207 (6%)
Strand=Plus/Plus
Query 311 TAACAATATTCCTCGTTTGGATAATCCTCCAACCGACAAAACCAAGATTCATCCTCCAAG 370
||||||| ||||| ||||| ||| |||||||| |||| ||| | ||| |||||||||
Sbjct 1 TAACAATCCTCCTCATTTGGGCAATTCTCCAACCTTCAAAGCCACGTTTCCTCCTCCAAG 60
Query 371 ACGCCACCGTCTACGCCTTTAATC-TCTC-G-CAG-CCT---AACCTCCTCACCTCAAAC 423
||||||||||||||||||| || | |||| | || || |||||||||||||| |||
Sbjct 61 ACGCCACCGTCTACGCCTTCAA-CGTCTCCGGCAATCCACCGAACCTCCTCACCTCCAAC 119
Query 424 TTTCAGATCACGATCGCTTCACGTAACCGAAACT--CAAGAATCGGAATCTACTACGACC 481
|| || ||||| | |||| ||||||| || | ||||| |||| | ||||||||||
Sbjct 120 TTCCAAATCACTCTTTCTTCCCGTAACCCTAA-TGACAAGA-TCGGCGTTTACTACGACC 177
Query 482 GTCTTCACGTCTACGCTACTTACCGGA 508
| ||| | ||||||||||| |||||||
Sbjct 178 GCCTTGAAGTCTACGCTACCTACCGGA 204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39228481593
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5