BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36010.2 Length=1935 Score E Sequences producing significant alignments: (Bits) Value Ahg482574 jgi|Araly1|482574|fgenesh2_kg.4__1634__AT2G36010.3 1358 0.0 Ahg952629 jgi|Araly1|952629|scaffold_97000002.1 481 1e-134 > Ahg482574 jgi|Araly1|482574|fgenesh2_kg.4__1634__AT2G36010.3 Length=1901 Score = 1358 bits (735), Expect = 0.0 Identities = 863/920 (94%), Gaps = 28/920 (3%) Strand=Plus/Plus Query 1035 AATCAG--ATGGCTTTTTGTAACTGAAGAGGATATCAAGAGTTTACCAGGTTTCCAGAAC 1092 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 990 AATCAGAAATGGCTTTTTGTAACTGAAGAGGATATCAAGAGTTTACCAGGTTTCCAGAAC 1049 Query 1093 CAGACTCTGATAGCCGTCAAAGCTCCTCATGGCACAACTTTGGAAGTGCCTGATCCAGAT 1152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1050 CAGACTCTGATAGCCGTCAAAGCTCCTCATGGCACAACTTTGGAAGTGCCTGATCCAGAT 1109 Query 1153 GAAGCGGCTGACCACCCACAAAGGAGATACAGGATCATTCTTAGAAGTACAATGGGACCT 1212 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1110 GAAGCGGTTGACCACCCCCAAAGGAGATACAGGATCATTCTTAGAAGTACAATGGGACCT 1169 Query 1213 ATTGACGTATACCTCGTCAGCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGT 1272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1170 ATTGACGTATACCTCGTCAGCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGTT 1229 Query 1273 GCAGCACCACCAGCATGCTTGCCTATTGCTTCTAGCTCAGGATCTACAGGACACCATGAC 1332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1230 GCAGCACCACCAGCATGCTTGCCTATTGCTTCTAGCTCAGGATCTACAGGACACCATGAC 1289 Query 1333 ATCGAAGCCTTAACTGTTGACAACCCAGAAACTGCTATTG----T--G-T--CTCATGAT 1383 |||||||||||||||||||| ||| ||| ||||||||||| | | | |||||||| Sbjct 1290 ATCGAAGCCTTAACTGTTGATAACACAGGAACTGCTATTGAGCATCAGGTGTCTCATGAT 1349 Query 1384 CATCCTCATCCTCAACCCGGCGATACCTCTGATCTTAATTATTTGCAAGAGCAAGTAGGA 1443 |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 1350 CATCCTCAACCTCAACCCGGCGATACCTCTGAACTTAATTATTTGCAGGAGCAGGTAGGA 1409 Query 1444 GGAATGCTTAAGATTACTCCCTCTGATGTTGAAAATGATGAGTCGGACTACTGGCTTCTC 1503 |||||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||| Sbjct 1410 GGAATGCTTAAGATTACTCCCTCTGACGTCGAAAATGATGAATCGGACTACTGGCTACTC 1469 Query 1504 TCAAATGCTGAGATTAGCATGACGGATATTTGGAAAACTGACTCTGGTATCGATTGGGAT 1563 |||| |||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||| Sbjct 1470 TCAAGTGCTGAAATTAGCATGACAGATATATGGAAAACCGACTCTGGTATCGATTGGGAT 1529 Query 1564 TATGGAATAGCCGACGTGAGTACTCCACCACCAGGAATGGGCGAAATAGCACCAACAGCT 1623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1530 TATGGAATAGCCGACGTGAGTACTCCACCACCAGGAATGGGCGAAATAGCACCAACCGCT 1589 Query 1624 GTTGACTCAACCCCGAGATGATCGAATACCAAGCACACTTCTCAACTTCTGATCCCAAAT 1683 ||||||||||||||||| ||||| |||||||| |||| | || | |||||| ||||| Sbjct 1590 GTTGACTCAACCCCGAGGTGATCCAATACCAAACACA-T-CT----T-CTGATCGCAAAT 1642 Query 1684 GTGTTACCTCACAACACTCCCTAAAATCATATACAAGGAGGGAGCAACTACAGAACGTGT 1743 ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct 1643 GTGTTACCTCACAACACTCCC-AAAATTAAATACAAGGAGGGAGCAACTACAGAACGTGT 1701 Query 1744 ATGAACCAATGGCAGGTGCGTTCCATACAATGT---ACCATTAGATTATGATTCATTTAT 1800 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1702 ATGAACCAATGGCAGGTGCGTTCCATACAATGTGCCACCATTAGATTATGATTCATTTAT 1761 Query 1801 CGCCTAGAGTGATGTTGTAGAGGAGCACCG---A---GAAACTAATGTAAGTTTAACAGA 1854 ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1762 TGCCTAGAGTGATGTTGTAGAGGAGCACCGGTTACAAGAAACTAATGTAAGTTTAACAGA 1821 Query 1855 GAATGTACTTCATCGGCTGCATTGGTACACTATTTGATTATAATATTTTTGACCACTCAA 1914 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1822 GAATGTACTTCATCGGCTGCATTGGTACACTATTTGATTATAATATTTTTGACCATTCAA 1881 Query 1915 ATGCATCTTTATAATCAGCT 1934 ||||||||| |||||||||| Sbjct 1882 ATGCATCTTCATAATCAGCT 1901 Score = 671 bits (363), Expect = 0.0 Identities = 480/532 (90%), Gaps = 26/532 (5%) Strand=Plus/Plus Query 526 TCACGAAAGAGAAAGGCGACAATGGATATGGTTGTTGCTCCATCTAATAATGGATTCACG 585 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 426 TCACGGAAGAGAAAGTCGACAATGGATATGGTTGTTGCTCCATCTAATAATGGATTCACG 485 Query 586 AGTTCTGGTTTCACTAACATACCTAGCAGTCCCTGTCAAACTCCTAG-AAAAGGGGGCAG 644 |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| Sbjct 486 AGTTCTGGTTTCACTAGCATACCTAGCAGTCCCTGTCAAACTCCT-GCAAAAGGGGGCAG 544 Query 645 AGTCAACATCAAGTCAAAGGCCAAAGGAAACAAGTCAACTCCTCAAACACCCATCTCGAC 704 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 545 AGTCAACATCAAGTCAAAGGCCAAAGGAAATAAGTCAACTCCCCAAACACCCATCTCGAC 604 Query 705 AAACGCT-GTTAGATCCTTTTATGAAATA-TCTTTC----A--TGTC--TA-G--AG-T- 749 |||||| ||| |||| | | | || || || | || | || | || | Sbjct 605 GAACGCTGGTT--CTCCTGTGA-CACTTACTCCATCGGGAAGTTGCCGTTATGACAGTTC 661 Query 750 AACAAGTCTCCTTACAAAAAAGTTCGTCAATCTAATTAAACAAGCCAAAGATGGAATGCT 809 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 TTTAGGTCTCCTTACAAAAAAGTTCGTCAATCTAATTAAACAAGCCAAAGATGGAATGCT 721 Query 810 GGACCTAAACAAAGCTGCAGAAACATTGGAGGTGCAGAAACGACGTATATATGATATTAC 869 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 GGATCTAAACAAAGCTGCAGAAACATTGGAGGTGCAGAAACGACGTATATATGATATTAC 781 Query 870 AAACGTTTTGGAGGGGATAGATCTCATTGAAAAGCCTTTCAAGAATCGAATACTTTGGAA 929 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 782 AAACGTTTTGGAGGGGATAGATCTCATCGAAAAGCCTTTCAAGAATCGAATACTTTGGAA 841 Query 930 GGGAGTTGATGCGTGTCCTGGCGATGAGGATGCTGACGTATCTGTATTACAGCTGCAGGC 989 ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 842 GGGAGTTGATGCGAGTCCTGGCGATGAGGATGCTGACGTATCTGTATTACAG--GCAG-- 897 Query 990 AGAAATTGAAAACCTCGCCCTCGAAGAGCAAGCATTAGACAACCAAATCAGA 1041 | || |||||||||| ||||||||||||||||| ||||| || ||||||||| Sbjct 898 A-AA-TTGAAAACCTTGCCCTCGAAGAGCAAGCGTTAGATAATCAAATCAGA 947 Score = 599 bits (324), Expect = 3e-170 Identities = 358/375 (95%), Gaps = 0/375 (0%) Strand=Plus/Plus Query 1 TCTTCCTCTTTCTCTCACTAAAACCCTTGTTTCCTTCACTCGCCGTCGCTTTTCCCGTCA 60 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | ||| Sbjct 51 TCTTCCTCTTTCTCTCACTAAAACCCTCGTTTCCTTCAATCGCCGTCGCTTTTCTCTTCA 110 Query 61 TCGGAATCTTCAAATTCGACTCTCGCTTCACTACGATCCATGTCCGGTGTCGTACGATCT 120 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 111 TCGGAATCTTCAAATTCGAGTCTCGCTTCACTACGATCCATGTCCGGTCTCGTACGATCT 170 Query 121 TCTCCCGGTTCTTCTCAGCCGCCACCGCCGCCGCCGCACCATCCACCGTCATCTCCGGTT 180 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 171 TCTCCCGGTTCTTCTCATCCGCCACCGCCGCCGCCGCACCATCCGCCGTCATCTCCGGTT 230 Query 181 CCGGTTACATCTACGCCGGTTATACCACCTATACGTCGTCACTTAGCTTTCGCCTCAACA 240 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 231 CCGGTTACATCTACGCCGGTTGTACCACCTATACGTCGTCACTTAGCTTTCGCCTCAACA 290 Query 241 AAACCTCCGTTTCATCCTTCCGATGATTACCATCGATTTAACCCTTCTTCGCTCAGTAAT 300 ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |||| Sbjct 291 AAACCGCCGTTTCATCCTTCGGATGATTACCATCGTTTTAACCCTTCTTCGCTCACTAAT 350 Query 301 AATAACGACAGGAGCTTCGTTCATGGTTGTGGTGTTGTAGATCGGGAGGAAGATGCTGTC 360 |||||||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||| Sbjct 351 AATAACGATAGGAGCTTCGTTAATGCTTGTGGTGTTGTAGATCGGGAGGAGGATGCTGTC 410 Query 361 GTTGTTAGATCTCCT 375 ||||||||||||||| Sbjct 411 GTTGTTAGATCTCCT 425 > Ahg952629 jgi|Araly1|952629|scaffold_97000002.1 Length=337 Score = 481 bits (260), Expect = 1e-134 Identities = 284/296 (96%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 80 CTCTCGCTTCACTACGATCCATGTCCGGTGTCGTACGATCTTCTCCCGGTTCTTCTCAGC 139 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1 CTCTCCCTTCACTACGATCCATGTCCGGTCTCGTACGATCTTCTCCCGGTTCTTCTCATC 60 Query 140 CGCCACCGCCGCCGCCGCACCATCCACCGTCATCTCCGGTTCCGGTTACATCTACGCCGG 199 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 CGCCACCGCCGCCGCCGCACCATCCGCCGTCATCTCCGGTTCCGGTTACATCTACGCCGG 120 Query 200 TTATACCACCTATACGTCGTCACTTAGCTTTCGCCTCAACAAAACCTCCGTTTCATCCTT 259 || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 121 TTGTACCACCTATACGTCGTCACTTAGCTTTCGCCTCAACAAAACCGCCGTTTCATCCTT 180 Query 260 CCGATGATTACCATCGATTTAACCCTTCTTCGCTCAGTAATAATAACGACAGGAGCTTCG 319 | |||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| Sbjct 181 CGGATGATTACCATCGTTTTAACCCTTCTTCGCTCACTAATAATAACGATAGGAGCTTCG 240 Query 320 TTCATGGTTGTGGTGTTGTAGATCGGGAGGAAGATGCTGTCGTTGTTAGATCTCCT 375 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTAATGCTTGTGGTGTTGTAGATCGGGAGGAAGATGCTGTCGTTGTTAGATCTCCT 296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72714277705 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5