BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36060.2 Length=960 Score E Sequences producing significant alignments: (Bits) Value Ahg482581 jgi|Araly1|482581|fgenesh2_kg.4__1641__AT2G36060.2 1055 0.0 Ahg898177 jgi|Araly1|898177|Al_scaffold_0005_2143 549 1e-155 Ahg949141 jgi|Araly1|949141|scaffold_801028.1 211 7e-54 > Ahg482581 jgi|Araly1|482581|fgenesh2_kg.4__1641__AT2G36060.2 Length=883 Score = 1055 bits (571), Expect = 0.0 Identities = 763/845 (90%), Gaps = 56/845 (7%) Strand=Plus/Plus Query 3 CCCACTCCAATTCTCGTCGCACCAATAGAGTAATTCAACTGCCCCAAATTGCTCTCGACT 62 |||||||||||||||||||||||||| ||||||||||||||||| || | | | | | Sbjct 1 CCCACTCCAATTCTCGTCGCACCAAT--AGTAATTCAACTGCCCC-AA-T--T-T-G-C- 50 Query 63 TTTTATTCTCGGATTAGCGTTTGTGCTTTCGCATCAGAGAATCTCTCA------G--TTC 114 ||| | | ||| | |||| |||||||||||||||||||||| | ||| Sbjct 51 ----ATTAGC-G-TTA--G--TGTG-TTTCGCATCAGAGAATCTCTCAGTTCTTGTCTTC 99 Query 115 T-TCTCAATTTAGGTCATCAGATCTCACAATCAATCGACTCGAACTCAAATCTCACTTCA 173 | ||||||||||||||||||||||||||||||||||||||||||| | || | | Sbjct 100 TCTCTCAATTTAGGTCATCAGATCTCACAATCAATCGACTCGAAC-C----CT-A----A 149 Query 174 TCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGTTCCGAGGAATTTCCGGT 233 || || | || || ||| || |||||| |||||||||||||||||||||||| ||| Sbjct 150 TC-AT-GACTCTTGGCTC-AGG---AGGATCAAGTGTTGTCGTTCCGAGGAATTTCAGGT 203 Query 234 TGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAA 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 204 TGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAA 263 Query 294 TGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACA 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 264 TGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACA 323 Query 354 ACGTAACTGTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACC 413 || | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 324 AC--A-CTGTACATGAGGGTCGAATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACC 380 Query 414 CTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATG 473 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 381 CTGAGAAACCCCCGACTGTTCGGTTCCATTCACGTATCAACATGACTTGTGTCAACCATG 440 Query 474 ATACCGGCGTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACA 533 | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 441 AAACCGGCGTGGTGGATTCGAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGGCAGTACA 500 Query 534 CAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGGCTGCATCGCATAACCGGAAGC 593 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 501 CAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGACTGCATCGCATAACCGGAAGC 560 Query 594 TTGTTCAACCTCCCGAAGGAACTTTCTTCTAATACTCTCAAAGCCT---ACCTTTGAGGG 650 ||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 561 TTGTTCAACCTCCTGAAGGAACCTTCTTTTAATACTCTCAAAGCCTTTTACCTTTGAGGG 620 Query 651 GCTTCTCCATTGTTG--G-TCTTCAAGCTTTT-CTTTCGTACCTTAAAGTAAAAACAATG 706 ||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||| Sbjct 621 GCTTCTCCATTGTTGTTGATCTTCAAGCTTTTTCTTTCGTACCTAAAAGTAAAAACAATG 680 Query 707 GTGTCTGTCGATGAATGATGATGTTCGATTGATCATCTGGAGTTTAAATCCTTGTGTGCA 766 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 681 GTGTCTGTGGATGAATGATGATGTTCGATTGATCATCTGGAGTTTAAATCCTTGTATGCA 740 Query 767 AATATATCTAGACAACGCTGTCTCACGACTTCATCTTCTCAGTTTAGATATAATATGGGA 826 ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| | Sbjct 741 AATATATCTAGACAACGTTGTCTCATGACTTCATCTTCTCAATTTAGATATAATATGGAA 800 Query 827 AACAA 831 ||||| Sbjct 801 AACAA 805 Score = 89.8 bits (48), Expect = 3e-17 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 897 TTTACTTCGCTTTTATTCGACCTGAACTCTCCTATTGTGTTCACATTTGAACGCAATTCA 956 |||||| | |||||| ||||||||||||||||||||||||||||||| || ||||||||| Sbjct 821 TTTACTGCACTTTTAGTCGACCTGAACTCTCCTATTGTGTTCACATTCGAGCGCAATTCA 880 Query 957 TGC 959 ||| Sbjct 881 TGC 883 > Ahg898177 jgi|Araly1|898177|Al_scaffold_0005_2143 Length=444 Score = 549 bits (297), Expect = 1e-155 Identities = 396/444 (89%), Gaps = 5/444 (1%) Strand=Plus/Plus Query 185 ATGACTCTTGGCTC---AGGATCGAGTGTTGTCGTTCCGAGGAATTTCCGGTTGCTGGAG 241 |||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||||| Sbjct 1 ATGACTCTTGGCTCTGGAGGATCTAGTGTTGTTGTTCCGAGGAATTTCCGGTTGTTGGAG 60 Query 242 GAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAATGGATGAT 301 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 GAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGAT 120 Query 302 GGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACAACGTAACT 361 ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 121 GGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACGTAACT 180 Query 362 GTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAA 421 || ||||| ||| | |||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 181 GTTCATGAAGGTAGAATTTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCAGAGAAA 240 Query 422 CCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC 481 ||||| ||||| || |||||||| ||| | |||||| ||||||||||||| || || || Sbjct 241 CCTCCAACTGTCCGATTCCATTCACGTGTTAACATGGCTTGTGTCAACCACGAAACAGGA 300 Query 482 GTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACAATGGAG 541 ||||||||| | ||||| || ||||| |||||||||||||||||| |||||||||||||| Sbjct 301 GTGGTGGATCCTAAGAAATTCGGGGTACTTGCAAACTGGCAAAGAGAGTACACAATGGAG 360 Query 542 GACATACTGACTCAATTGAAGAAGGAGATGGCTGCATCGCATAACCGGAAGCTTGTTCAA 601 || |||||||| || | |||||||| ||||| | ||||||||||| |||||||||||| Sbjct 361 GATATACTGACACAGCTAAAGAAGGAAATGGCCACGTCGCATAACCGTAAGCTTGTTCAA 420 Query 602 CCTCCCGAAGGAACTT-TCTTCTA 624 ||||| ||||| |||| | ||||| Sbjct 421 CCTCCAGAAGGTACTTGT-TTCTA 443 > Ahg949141 jgi|Araly1|949141|scaffold_801028.1 Length=365 Score = 211 bits (114), Expect = 7e-54 Identities = 146/161 (91%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 222 GGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTG 281 |||||||||||||| || |||||||||||||||| |||||||||||||| |||||||||| Sbjct 79 GGAATTTCCGGTTGTTGAAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTG 138 Query 282 TGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCA 341 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| Sbjct 139 TGAGCTATGGAATGGATGATGGAGATGACATCTATATGCAATCTTGGACTGGCACCATCA 198 Query 342 TCGGTCCTCACAACGTAACTGTACATGAGGGTCGGATTTAT 382 |||||||||||||| | |||| ||||| ||| | |||||| Sbjct 199 TCGGTCCTCACAAC--A-CTGTTCATGAAGGTAGAATTTAT 236 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35644927395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5