BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36145.1
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482590 jgi|Araly1|482590|fgenesh2_kg.4__1650__AT2G36145.1 891 0.0
> Ahg482590 jgi|Araly1|482590|fgenesh2_kg.4__1650__AT2G36145.1
Length=680
Score = 891 bits (482), Expect = 0.0
Identities = 594/645 (92%), Gaps = 19/645 (3%)
Strand=Plus/Plus
Query 1 TCACTATGTGAAGGACGCGACAGTAGGAAAATGGCTTTCGCAGCGACG---CTCTTCGTT 57
|||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||
Sbjct 1 TCACTATGTGAAGGACCCGAGAGTAGGAAAATGGCTTTCGCAGCAACGTCTCTCTTCGTT 60
Query 58 CCACCTCCAGTAG---CCGTCCGATCTCCGGCTAGATTCCTTGGCCGTCTCTCAATTCCT 114
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CCACCTCCAGTAGTAACCGTCCGATCTCCGGCTAGATTCCTTCGCCGTCTCTCAATTCCT 120
Query 115 TGCCTGCTCCAAGTTCTTCCGACTAATGGTGCAGCGAGTCCCCGGCAAGTGAAGAGGGCA 174
|| | || | |||||||| ||||| ||| |||||| ||||||| | |||||||||
Sbjct 121 TG-C--CT----G--CTTCCGACGAATGGCGCAACGAGTCGCCGGCAAATAAAGAGGGCA 171
Query 175 ATTGTAGCAAATGCTTCGCCGGGAAACGGTGGCGTTAAGGCCGAGGAAGAAGACGGAGTT 234
||||||||||||||||| |||||||||||||||||||||| |||| |||||| ||||||
Sbjct 172 ATTGTAGCAAATGCTTCATCGGGAAACGGTGGCGTTAAGGCAGAGGGAGAAGATGGAGTT 231
Query 235 TCTCTGGGTACTATGAAGCTTCCCGTAG-ATACCGATCTCGCTAGATTCGAAACTCTTCT 293
||||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 232 TCTCTGGGTACAATGAAGCTTCCCG-CGAATACCGATCTCGCGAGATTCGAAACTCTTCT 290
Query 294 ATTTCAGTGGGCGAATAGTCTTTGCCAAGGAGCCAATCTACCTCTACCTGTTCCTCTCAA 353
||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 291 CTTTCAGTGGGCCAACAGTCTTTGCCAAGGAGCCAATCTACCTCTTCCTGTTCCTCTCAA 350
Query 354 GGTGGACAGAATAAGCGGAGGAGCGAGGTTAGGATTCATAGTGATGGAAGATGAAGGCAA 413
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GGTGGATAGAATAAGTGGAGGAGCGAGGTTAGGATTCATAGTGATGGAAGATGAAGGCAA 410
Query 414 GACCGATGTTCCGGTTTACATTGACTGTTTGGTTTTCCAAACAACAGAGAATGGTGTAGT 473
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 411 GACCGATGTTCCTGTTTACATTGACTGTTTGGTTTTCCAAACAACAGAGAATGGTTTAGT 470
Query 474 GTTCCAAGCGACGCGTAATGGGCGGAAGAAAGATAAAGCACCTCCGGGAGAAGAAAGAAT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GTTCCAAGCGACGCGTAATGGGCGGAAGAAAGATAAAGCACCTCCGGGAGAAGAAAGAAT 530
Query 534 CATGAGAAGTCTCTTAGGAGCCCTCAAAAAAGCTGTGGAGATTGCTCGAGTCACATAAAC 593
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 531 CATGAGAAGTCTCTTAGGAGCTCTCAAAAAAGCTGTTGAGATTGCTCGAGTCACATAAAC 590
Query 594 A-TTTGCC-TCTTTCAGTTGAAACCGAATTTCGAATATCTCTTTT 636
| |||||| ||||||| || ||| ||||||||||||||||||||
Sbjct 591 AATTTGCCCTCTTTCAATTTAAATTGAATTTCGAATATCTCTTTT 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26952902319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5