BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36220.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482594 jgi|Araly1|482594|fgenesh2_kg.4__1654__AT2G36220.1 1555 0.0
> Ahg482594 jgi|Araly1|482594|fgenesh2_kg.4__1654__AT2G36220.1
Length=1150
Score = 1555 bits (842), Expect = 0.0
Identities = 1006/1084 (93%), Gaps = 16/1084 (1%)
Strand=Plus/Plus
Query 71 CTCTCTATGCCACAAGTCGATATAGAAGCCTTTGTTTCTTCAGTATGCATCGGTGGCTCC 130
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 31 CTCTCTATGCCACAAGTCGATCTAGAAGCCTTTGTTTCTTCAGTATGTGTCGGTGGCTCC 90
Query 131 GACCACCGCAAGATCGTATGCGAAACCCTCGCCGACGACTCA-ACGATCCCACCTTATTA 189
|| ||||| ||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 91 GATCACCGGAAGATCGCATGCGAAACCCTCGCCGACGAC-CAGACGATCCCACCTTATTA 149
Query 190 CAACAACTCCGCCGTTAGTCCGAGTGATTTCCCACCGGAATCTTATTTCTTGTCAAACGA 249
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 150 CAACAACTCCGCCGTGAGTCCGAGTGATTTTCCACCGGAATCTTATTTCTTGTCAAAAGA 209
Query 250 TGCTCAGCTAGAGTGGCTCAGCGACAACGCCTTCTTTGATCGTAAAGACTCACAAAAAGG 309
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 210 TGCTCAGCTCGAGTGGCTCAGCGACAACGCCTTCTTTGATCGTAAAGATTCACAGAGAGG 269
Query 310 AAACTCTGGGATTCTCAATTCTAATCCCAACTCGAATCCAAGCTCGCAACGGTTCTTACT 369
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 270 AAACTCTGGGATTCTCAATTCCAATCCAAACTCGAATCCAAGCTCGCAACGGTTTTTACT 329
Query 370 AAAATCCAAAGCGTCGATCATCGGTTTGCCTAAACCGCAGAAAACGTGTTTCAACGAGGC 429
||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |
Sbjct 330 AAAATCCAAAGCGTCGATCATCGGTTTACCGAAACCTCAGAAAACGTGTTTCAACGAGAC 389
Query 430 AAAGCAACGGAGACACG-CGGGCAAGAACCGGGTCATCTTGAAACGGGTCGGGTCAAGGA 488
|||||||||||||||| | ||||||||||| |||||| ||||||||||||||||| |||
Sbjct 390 CAAGCAACGGAGACACGAC-GGCAAGAACCGAGTCATCCTGAAACGGGTCGGGTCACGGA 448
Query 489 TAAAGACGGATATTTCGCTTCTGGAACCTTCTTCTCCTAAAGTCTCTTGCATCGGTAGAG 548
|||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 449 TAAAAACGGATACTTCGCTTCTTGAACCTTCTTCTCCTATAGTCTCTTGCATCGGTAGAG 508
Query 549 TGAGATCCAGAAGAGAACGCAGCCGCCGTATGCACCGTCAAAAATCAAGTCGGGTCGAAC 608
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TGAAATCCAGAAGAGAACGCAGCCGCCGTATGCACCGTCAAAAATCAAGTCGGGTCGAAC 568
Query 609 CGGTAAACCGGGTTAAGAAACCCGGGTTTATGGCGAGTTTCAGAGCTATTTTCAGGATCA 668
||| ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct 569 CGGCGAACCGGGTTAAGAAATCCGGGTTTATGGCGAGTTTCAGAGCCATCTTCAGGATCA 628
Query 669 AAGGCGGCTGCAAAGACGTGTCAGCGCGTGAGACTCACACGTCGACGAGAAACACACACG 728
|||||||||||||||||||||||||||||||||||||||||||| | || |||||||| |
Sbjct 629 AAGGCGGCTGCAAAGACGTGTCAGCGCGTGAGACTCACACGTCGCCAAGTAACACACAGG 688
Query 729 ACATCAGGAGCCGACTTCCTGCGGAAGCTGATGAGAAGTCGGT-ATTCGACGGCGGAGAA 787
||||||||||| | ||||| | |||||||| ||||||||| || ||||||||||||||||
Sbjct 689 ACATCAGGAGCAGGCTTCCGGTGGAAGCTGTTGAGAAGTC-GTCATTCGACGGCGGAGAA 747
Query 788 CCGGTGGTACCCGGTTTGGGTGGGATGACGCGTTTCGCATCTGGTAGAAGAGCGGATTTG 847
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 748 CCGGTGGTACCCGGTTTGGGTGGGATGACGCGTTTCGCATCTGGAAGAAGAGCGGATTTG 807
Query 848 TTGGGTGGTGGAGGATGTTGACGCGGCG-GA-TGACAAGTGTAATACATGTGGGGTCCAG 905
|||| |||||||||||||||||| |||| | ||||||||||||||||||| ||||||||
Sbjct 808 TTGGCTGGTGGAGGATGTTGACGTGGCGCGTGTGACAAGTGTAATACATGTCGGGTCCAG 867
Query 906 TTATATAGTGTTTT-AAGTCCCAGGGGGAAAGTAGAAGAAATAGTACTTTAGTTGTCTTG 964
|||| ||||||||| ||||| |||||||||||||||| | ||||||||| |||||||||
Sbjct 868 TTATCTAGTGTTTTTAAGTCTCAGGGGGAAAGTAGAA-A--TAGTACTTTGGTTGTCTTG 924
Query 965 TCTGAtttttttGAGTGGAACTCGTTTT-GAAAAGTCGTTGGTGATGACGTGGCAGCTGA 1023
||||| | ||||| |||| | |||| |||||||||||||||||||||||||| ||||
Sbjct 925 TCTGAATATTTTG-GTGGTTGTAATTTTTGAAAAGTCGTTGGTGATGACGTGGCAACTGA 983
Query 1024 TCAACGTTTTTATTCAGAAAGAAACACGGCAACGCGAAAGCGGTGATTTCACACCCACCG 1083
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TCAACGTTTTT-TTCAGAAAGAAACACGGCAACGCGAAAGCGGTGATTTCACACCCACCG 1042
Query 1084 CACTGTTTTTGTATTCTTCTAGTTTCCGTTGTAAATAGTTCAGTTTAAATGTTATTATAT 1143
|||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1043 CACTGTTTTTGTTTTCTTCTAGTTTCCGTTGTATATAGTT-AGTTTAAATGTTATTATAT 1101
Query 1144 CTGT 1147
|||
Sbjct 1102 TTGT 1105
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 21 AAAATATCAAAAGCTTTCACATTACAAT 48
||||||||||||||||||||||||||||
Sbjct 1 AAAATATCAAAAGCTTTCACATTACAAT 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5