BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36430.1 Length=1560 Score E Sequences producing significant alignments: (Bits) Value Ahg934274 jgi|Araly1|934274|scaffold_402262.1 2113 0.0 > Ahg934274 jgi|Araly1|934274|scaffold_402262.1 Length=1398 Score = 2113 bits (1144), Expect = 0.0 Identities = 1307/1385 (94%), Gaps = 13/1385 (1%) Strand=Plus/Plus Query 1 AATCAAAATGGTGGATGCGGCGGAGCAACCACCTTCT---ACC---T-C--CGAGGGAGA 51 |||||||||||||||||||||||||||||| |||||| || | | ||||||||| Sbjct 14 AATCAAAATGGTGGATGCGGCGGAGCAACCGCCTTCTGCCTCCGTATCCGACGAGGGAGA 73 Query 52 AAGCCTCCTCAAGATCCACATTGAGAGGATGCATAAGAAGCTGAAGGAACCACCACGGTT 111 ||||||| ||||||||| ||||||||| |||||| ||||||||||||| ||||| ||||| Sbjct 74 AAGCCTCTTCAAGATCCGCATTGAGAGAATGCATGAGAAGCTGAAGGAGCCACCGCGGTT 133 Query 112 GCTCAGTTCGGCCGCCGGGAAACCTACTTGCTCCATCTTCCGGGTACCTCAGAGCATGAT 171 || || ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| Sbjct 134 ACTTAGCTCGGCTGCCGGAAAACCAACTTGCTCCATCTTCCGAGTACCTCAGAGCATGAT 193 Query 172 TGATTGTAATGGAAGATGCTATGAGCCACGAGTGGTCTCGATTGGACCGTACCACCGTGG 231 ||||||||| || ||||| |||||||| |||||||||||| ||||||||| ||||||||| Sbjct 194 TGATTGTAACGGTAGATGGTATGAGCCGCGAGTGGTCTCGGTTGGACCGTTCCACCGTGG 253 Query 232 CCAAACACAACTCAAAATGATTGAAGAACACAAATGGCGTTACCTAAACGTTCTGCTCAC 291 |||||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 254 CCAAACACGCCTCGAAATGATTCAAGAACACAAATGGCGTTACCTAAACGTTCTTCTCAC 313 Query 292 TAGAACCCAAAACCTAACTCTAGAGGATTACATGAAGAGCGTGAAGAACGTTGAGGAAGT 351 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 314 GAGAACCCAAAACCTAACTCTAGAGGATTACATGAAGAGCGTGAAGAGCGTTGAGGAAGA 373 Query 352 GGCGAGAGAATGTTACTCCGAGACAATCCACATGGACTCGGAAGAGTTCAACGAGATGAT 411 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 374 GGCGAGAGAGTGTTACTCCGAGACAATCCATATGGACTCGGAAGAGTTCAACGAGATGAT 433 Query 412 GGTTCTTGACGGTTGCTTTCTCCTTGAGCTGTTTCGCAAAGTGAACAATCTTGTTCCTTT 471 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 434 GGTTCTTGACGGTTGCTTTCTTCTTGAGCTGTTTCGCAAAGTGAACAATCTTGTTCCTTT 493 Query 472 CGAACCAAACGATCCACTTGTGGCCATGGCTTGGGTTCTTCCTTTCTTCTACAGAGATTT 531 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 494 CGAACCAAACGATCCACTTGTAGCCATGGCTTGGGTTCTTCCTTTCTTCTACAGAGATTT 553 Query 532 TCTCTGTCTTGAGAATCAAATCCCTTTCTTCGTTCTAGAAACTTTGTTCAATCTCACAAG 591 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 554 TCTCTGTCTTGAGAATCAAATCCCTTTCTTCGTTCTTGAAACTTTGTTCGATCTCACAAG 613 Query 592 AGGAGACAACGAAAACGAGACAAACGCTTCTTTACAATCTCTAGCGTTTGCGTTTTTCAA 651 |||||| ||| |||||||||| ||||||||||||| ||||||||||||||||| ||||| Sbjct 614 AGGAGATAACAAAAACGAGACCAACGCTTCTTTACCGTCTCTAGCGTTTGCGTTCTTCAA 673 Query 652 CAACATGATGCACAGAACAGAGGAAGATCTCGCCAGGTTCAAAGAGCTAAGAGCCAAACA 711 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 674 CAACATGATGCACAGAACAGACGAAGATCTCGCCAGGTTCAAAGAGCTAAGAGCAAAACA 733 Query 712 CCTCCTCGACCTCCTCCGGTCAAGTTTCATCCCGGAGAGTGAGCTTCACACGCCGCCGGC 771 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 734 CCTCCTCGACCTCCTCCGGTCAAGTTTCATCCCGGAGAGTCAGCTTCACACGCCGCCGGA 793 Query 772 AACGAATCCAGGGAAGGAAAAGATGCCGTCCCACATTATCCACAGCATTTCGAAGCTCCG 831 |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 794 AACGAATCCAGGGAAGGAGAAGATGCCGTCCCACATCATCCACAGCATCTCGAAGCTCCG 853 Query 832 GCGAGCCGGGATCAAACTCCGAGAGCTGAAAGACGCAGAGAGCTTCTTAGTGGTGAGATT 891 |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 854 GCGAGCAGGGATCAAACTCCGGGAGCTAAAAGACGCAGAGAGCTTCTTAGTGGTGAGATT 913 Query 892 CAGACACGGGA-CCATCGAGATGCCGGCGATCACCGTCGACGATTTCATGAGCAGTTTCT 950 ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 914 CAGACAC-GGAGCGATCGAGATGCCGGCGATCACCGTCGACGATTTCATGAGCAGTTTCT 972 Query 951 TAGAGAACTGCGTGGCATACGAGCAATGCCACGTGGCGTGCTCAATGCATTTCACGACAT 1010 |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| Sbjct 973 TAGAGAACTGCGTGGCCTATGAGCAGTGCCACGTGGCGTGCTCAATGCATTTCACGACAT 1032 Query 1011 ACGCGACGCTCCTAGATTGTCTGACGAATACTTACAAGGACGTTGAGTATCTATGCGACC 1070 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1033 ACGCGACGCTCCTAGATTGTCTGACGAACACTTACAAGGACGTTGAGTATCTATGCGACC 1092 Query 1071 AAAACATCATAGAAAACTATTTCGGAACAGATACAGAGCTGGCGAAATTCGTGAACAGTT 1130 |||||||||||||||||||||||| |||||| |||||||| |||| ||||||||||||| Sbjct 1093 AAAACATCATAGAAAACTATTTCGCAACAGACACAGAGCTTGCGAGATTCGTGAACAGTC 1152 Query 1131 TAGGCAGAGATGTGGCGTTCGACATAACACAGTGTTATCTCAAAGACTTGTTTGAAGAAG 1190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1153 TAGGCAGAGATGTGGCGTTCGACATAACACAGTGTTATCTCAAAGACTTGTTTGAAGAAG 1212 Query 1191 TGAATGAGTATTACAAGAGTAGTTGGCACGTGGAATGGGCTACTTTCAAATTCACTTACT 1250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1213 TGAATGAGTATTACAAGAGTAGTTGGCACGTGGAATGGGCTACTTTCAAATTCACTTACT 1272 Query 1251 TTAACTCTCCTTGGTCTTTTGTCTCTGCTCTTGCTGCTCTTGTTCTTTTGGTCTTGTCCG 1310 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1273 TTAACTCTCCGTGGTCTTTTGTCTCTGCTCTTGCTGCTCTTGTTCTTTTGGTCTTGTCCG 1332 Query 1311 TTATCCAGACTATTTACACTGTTTTCCAGGCTTATCAAAAATAAATTTTTCAACCTTTTC 1370 ||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1333 TTATCCAAACTGTTTACACTGTTTTCCAGGCTTATCAAAAATAAAATT--CAACCTTTTC 1390 Query 1371 ATTAT 1375 ||||| Sbjct 1391 ATTAT 1395 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58430435830 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5