BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36460.1 Length=1432 Score E Sequences producing significant alignments: (Bits) Value Ahg482625 jgi|Araly1|482625|fgenesh2_kg.4__1685__AT2G36460.1 1868 0.0 Ahg938186 jgi|Araly1|938186|scaffold_502377.1 1070 0.0 Ahg892283 jgi|Araly1|892283|Al_scaffold_0006_279 813 0.0 > Ahg482625 jgi|Araly1|482625|fgenesh2_kg.4__1685__AT2G36460.1 Length=1329 Score = 1868 bits (1011), Expect = 0.0 Identities = 1189/1273 (93%), Gaps = 19/1273 (1%) Strand=Plus/Plus Query 5 TCTTCTGGAAGCTACCATCA-CTCTCTCCTATATAACTCAAAATTCACcatcatcttcat 63 |||||||||||||||||||| | | ||||||||||| || | ||| ||||||| |||| Sbjct 1 TCTTCTGGAAGCTACCATCACCCCCCTCCTATATAA-TC---A-TCATCATCATCATCAT 55 Query 64 catcatcatcatc-atcatcCTTTCTTTATCCAACTT-TCTTCACCAAATCGATTCTTCT 121 |||||||||| || || | || ||||||||||| || |||||| | |||||| |||| Sbjct 56 CATCATCATCTTCAAT--TTCTCTCTTTATCCAA-TTCTCTTCATCGAATCGA---TTCT 109 Query 122 TCAACCATGTCTTCCTTCACCTCCAAATTCGCCGATGAGCTGATTGCTAACGCTGCTTAC 181 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 110 TCAACCATGTCTTGCTTCACCACCAAATTCGCCGATGAGCTGATTGCTAACGCTGCGTAC 169 Query 182 ATCGGAACACCTGGAAAAGGTATCCTTGCGGCAGATGAATCAACTGGTACTATTGGGAAA 241 ||||| |||||||| ||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 170 ATCGGCACACCTGGGAAAGGTATCCTTGCGGCAGATGAATCAACTGGTACCA-TCGGAAA 228 Query 242 -CGTCTCGCTAGCATCAACGTTGAGAACGTTGAATCCAACAGACGTGCTCTTCGTGAGCT 300 ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 229 GCGTCTAGCTAGCATCAACGTTGAGAACGTTGAATCGAACAGACGTGCTCTTCGTGAGCT 288 Query 301 TCTCTTCACTACTCCTGGAGCTCTTCCTTGCCTCAGTGGTGTTATCCTCTTTGAAGAAAC 360 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 289 TCTCTTCACTACTCCTGGAGCTCTTCCTTGTCTCAGTGGTGTTATCCTCTTTGAAGAGAC 348 Query 361 TCTTTACCAGAAGAGCTCTGATGGTACGCCTTTTGTTGATATGTTGAAGAGTGCAGGAGT 420 ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 349 TCTCTACCAGAAGAGCTCTAATGGTACGCCTTTTGTGGATATGTTGAAGAGTGCAGGAGT 408 Query 421 TTTGCCTGGTATTAAGGTTGATAAGGGTACCGTTGAGCTTGCTGGAACCAATGGTGAGAC 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 CTTGCCTGGTATTAAGGTTGATAAGGGTACCGTTGAGCTTGCTGGAACCAATGGTGAGAC 468 Query 481 TACTACTCAAGGTCTTGATGGTCTTGGTGACCGTTGCAAGAAATACTACGAGGCTGGTGC 540 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 469 GACTACTCAAGGTCTTGATGGTCTTGGTGACCGTTGCAAGAAGTACTACGAGGCTGGTGC 528 Query 541 TCGTTTCGCCAAGTGGCGTGCGGTTCTTAAGATTGGTGTTAATGAGCCATCTCAGTTAGC 600 ||||||||| |||||||||||||||||||||||||||| |||||||| ||| ||||||| Sbjct 529 TCGTTTCGCTAAGTGGCGTGCGGTTCTTAAGATTGGTGAGAATGAGCCCTCTGAGTTAGC 588 Query 601 TATCCATGAGAACGCTTATGGATTGGCTAGGTATGCTGTCATTTGTCAGGAGAACGGTCT 660 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 589 TATCCATGAGAACGCTTATGGATTGGCTAGGTACGCTGTCATTTGTCAGGAGAACGGTCT 648 Query 661 TGTGCCGATTGTGGAGCCTGAGATTCTTGTTGATGGCTCTCATGACATTCAGAAGTGTGC 720 |||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct 649 TGTGCCGATTGTGGAGCCTGAGATTCTTGTTGATGGTTCTCACGACATCCACAAGTGTGC 708 Query 721 CGCGGTGACAGAGCGTGTTCTTGCAGCTTGCTACAAGGCTCTGAGTGATCACCATGTCTT 780 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 709 CGCGGTGACAGAGCGTGTTCTTGCAGCTTGCTACAAGGCCCTGAGTGATCACCATGTCTT 768 Query 781 GCTAGAAGGAACACTCTTGAAACCTAACATGGTTACTCCAGGATCAGAGAGTGCGAAGGT 840 ||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 769 GCTTGAAGGAACACTCTTGAAACCAAACATGGTGACTCCAGGATCAGAGAGTGCCAAGGT 828 Query 841 TGCACCAGAGGTGATTGCTGAGCACACTGTCCGTGCTCTTCAGAGGACAGTTCCAGCTGC 900 ||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| Sbjct 829 TGCTCCAGAGGTGATTGCAGAGCACACTGTCCGTGCTCTTCAGAGGACTGTGCCAGCTGC 888 Query 901 TGTTCCAGCCATAGTGTTCTTGTCTGGTGGACAGAGCGAGGAAGAGGCGACAAGAAACCT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 889 TGTTCCAGCCATAGTGTTCTTGTCTGGTGGACAGAGCGAGGAAGAGGCGACAAGAAACCT 948 Query 961 TAACGCGATGAACCAGTTGAAGACAAAGAAGCCTTGGTCGT-TGTCTTTCTCCTTTGGAA 1019 ||||||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||| Sbjct 949 TAACGCGATGAACAAGTTGAAGACAAAGAAGCCTTGGTC-TCTGTCTTTTTCCTTTGGAA 1007 Query 1020 GGGCGTTGCAGCAGAGCACTTTGAAGACTTGGGGAGGAAAAGAGGAGAATGTGAAGAAGG 1079 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1008 GGGCGTTGCAACAGAGCACTTTGAAGACTTGGGGAGGAAAAGAGGAGAATGTGACCAAGG 1067 Query 1080 CTCAAGAAGCGTTCTTGGTCAGATGCAAAGCTAACTCTGAAGCAACACTTGGTGCTTACA 1139 | ||||||||||||||||| |||||||| || |||||||| || ||||||||||| |||| Sbjct 1068 CGCAAGAAGCGTTCTTGGTTAGATGCAAGGCCAACTCTGAGGCCACACTTGGTGCCTACA 1127 Query 1140 AGGGTGATGCTAAGCTCGGTGAAGGTGCAGCTGAGAGCCTTCACGTTAAGGATTACAAGT 1199 | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1128 AAGGTGATGCTAAGCTCGGTGAAGGTGCAGCAGAGAGCCTCCACGTTAAGGATTACAAGT 1187 Query 1200 ACTGAAGAAAGAGGCTGAGGATCGTAgtttttatatcatcgtttatgttcttgctttcac 1259 ||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1188 ACTGATGAAAGAGGCTAAGGATCGTAGTTTTTATATCATCGTTGC-GTTCTTGCTTTCAC 1246 Query 1260 tttctctgttttt 1272 ||| ||||||||| Sbjct 1247 TTTGTCTGTTTTT 1259 > Ahg938186 jgi|Araly1|938186|scaffold_502377.1 Length=1119 Score = 1070 bits (579), Expect = 0.0 Identities = 936/1108 (84%), Gaps = 26/1108 (2%) Strand=Plus/Plus Query 111 TCGAT-TCTTCTTC-AACCATGTCTTCCTTCACCTCCAAATTCGCCGATGAGCTGATTGC 168 ||||| ||| | || || ||||||| |||||||| |||||||||||||||| |||| || Sbjct 3 TCGATCTCTCCGTCTAAACATGTCTGCCTTCACCAGCAAATTCGCCGATGAGTTGATCGC 62 Query 169 TAACGCTGCTTACATCGGAACACCTGGAAAAGGTATCCTT-GCGGCAGATGAATCAACTG 227 |||||||| |||||||| ||||||||||||||||| || || || ||||| || |||| Sbjct 63 CAACGCTGCCTACATCGGCACACCTGGAAAAGGTAT-TTTGGCTGCTGATGAGTCCACTG 121 Query 228 GTACTATTGGGAAA-CGTCTCGCTAGCATCAACGTTGAGAACGTTGA-ATCCAACAGACG 285 |||| | | ||||| ||||| |||||||||||||||||||||||||| | |||||||||| Sbjct 122 GTACCA-TCGGAAAGCGTCTAGCTAGCATCAACGTTGAGAACGTTGAGA-CCAACAGACG 179 Query 286 TGCT-CTTCGTGAGCTTCTCTTCACTACTCCTGGAGCTCTTCCTTGCCTCAGTGGTGTTA 344 | | || ||||||||||| ||||| | ||||| |||||||||||||| |||||||| | Sbjct 180 T-ATCCTCCGTGAGCTTCTTTTCACCGCCCCTGGTGCTCTTCCTTGCCTTAGTGGTGTCA 238 Query 345 TCCTCTTT-GAAGAAACTCTTTACCAGAAGAGCTCTGATGGTACGCCTTTTGTTGATATG 403 |||| ||| ||||| ||||||||||| ||||| || ||||| | || |||||||||||| Sbjct 239 TCCT-TTTCGAAGAGACTCTTTACCAAAAGAGTTCCGATGGCAAGCTTTTTGTTGATATC 297 Query 404 TTGAA-G-AGTGCAGGAGTT-TTGCCTGGTATTAAGGTTGATAAGGGTACCGTTGAGCTT 460 ||||| | || | ||||||| || || ||||| |||||||| ||||||||| ||||||| Sbjct 298 TTGAAGGAAG-G-AGGAGTTCTT-CCCGGTATCAAGGTTGACAAGGGTACCATTGAGCTA 354 Query 461 GCTGGAACCAATGGTGAGACTACTACTCAAGGTCTTGATGGTCTTGGTGACCGTTGCAAG 520 ||||||||||| |||||||| || |||||||||||||| |||||||||||||| |||||| Sbjct 355 GCTGGAACCAACGGTGAGACCACCACTCAAGGTCTTGACGGTCTTGGTGACCGATGCAAG 414 Query 521 AAATACTACGAGGCTGGTGCTCGTTTCGCCAAGTGGCGTGCGGTTCTTAAGATTGGTGTT 580 || |||||||| ||||||||||||||||||||||||||||| || || ||||| || | Sbjct 415 AAGTACTACGAAGCTGGTGCTCGTTTCGCCAAGTGGCGTGCAGTCCTCAAGATCGGCGAG 474 Query 581 AATGAGCCATCTCAGTTAGCTATCCATGAGAACGCTTATGGATTGGCTAGGTATGCTGTC 640 || ||||||||| || || | ||||||||||||||||| ||||| ||||| || ||||| Sbjct 475 AACGAGCCATCTGAGCTATCCATCCATGAGAACGCTTACGGATTAGCTAGATACGCTGTT 534 Query 641 ATTTGTCAGGAGAACGGTCTTGTGCCGATTGTGGAGCCTGAGATTCTTGTTGATGGCTCT 700 || || || |||||||||||||| || ||||| ||||||||||| || |||||||| || Sbjct 535 ATCTGCCAAGAGAACGGTCTTGTACCCATTGTTGAGCCTGAGATCCTAGTTGATGGATCC 594 Query 701 CATGACATTCAGAAGTGTGCCGCGGTGACAGAGCGTGTTCTTGCAGCTTGCTACAAGGCT 760 |||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 595 CATGACATCCAGAAGTGTGCTGCTGTGACTGAGCGTGTTCTTGCAGCTTGCTACAAGGCT 654 Query 761 CTGAGTGATCACCATGTCTTGCTAGAAGGAACACTCTTGAAACCTAACATGGTTACTCCA 820 || || || ||||| |||||||| || || || |||||||| ||||||||||| || || Sbjct 655 CTTAGCGACCACCACGTCTTGCTCGAGGGTACCCTCTTGAAGCCTAACATGGTGACACCC 714 Query 821 GGATCAGAGAGTGCGAAGGTTGCACCAGAGGTGATTGCTGAGCACACTGTCCGTGCTCTT 880 |||||||| || | |||||| |||| || || || ||||||||||| |||||||| ||| Sbjct 715 GGATCAGACAGCCCCAAGGTTTCACCTGAAGTCATCGCTGAGCACACCGTCCGTGCCCTT 774 Query 881 CAGAGGACAGTTCCAGCTGCTGTTCCAGCCATAGTGTTCTTGTCTGGTGGACAGAGCGAG 940 ||||| || || ||||| |||||||||||||| || ||||| || ||||||||||| ||| Sbjct 775 CAGAGAACCGTCCCAGCAGCTGTTCCAGCCATTGTCTTCTTATCCGGTGGACAGAGTGAG 834 Query 941 GAAGAGGCGACAAGAAACCTT-AACGCGATGAACCAGTTGAAGACAAAGAAGCCTTGGTC 999 ||||| || ||||| ||| || ||||| ||||||||||||||||| |||||||| ||||| Sbjct 835 GAAGAAGCTACAAGGAAC-TTGAACGCCATGAACCAGTTGAAGACCAAGAAGCCATGGTC 893 Query 1000 GTTGTCTTTCTCCTTTGGAAGGGCGTTGCAGCAGAGC-ACTTTGAAGACTTGGGGAGGAA 1058 ||||||||||| || ||| | |||||||||||| | || |||||||| |||| ||| | Sbjct 894 ATTGTCTTTCTCATTCGGACGTGCGTTGCAGCAGT-CTACCTTGAAGACATGGGCAGGCA 952 Query 1059 AAGAGGAGAATGTGAAGA-AGGCTCAAGAAGCGTTCT-TGGTCAGATGCAAAGCTAACTC 1116 ||||||||||||| ||| || ||||||| ||||| | || | || ||||| || ||||| Sbjct 953 AAGAGGAGAATGTCAAGGCAG-CTCAAGAGGCGTTGTATG-TGAGGTGCAAGGCCAACTC 1010 Query 1117 TGAAGCAACACTTGGTGCTTACAAGGGTGATGCTAAGCTCGGTGAAGGTGCAGCTGAGAG 1176 |||||| ||||| || | ||||||||||| |||||||| ||||| || ||||||||||| Sbjct 1011 TGAAGCCACACTCGGAACCTACAAGGGTGACGCTAAGCTTGGTGATGGAGCAGCTGAGAG 1070 Query 1177 CCTTCACGTTAAGGATTACAAGTACTGA 1204 ||||||||| || ||||||||||||||| Sbjct 1071 CCTTCACGTGAAAGATTACAAGTACTGA 1098 > Ahg892283 jgi|Araly1|892283|Al_scaffold_0006_279 Length=1080 Score = 813 bits (440), Expect = 0.0 Identities = 887/1099 (81%), Gaps = 45/1099 (4%) Strand=Plus/Plus Query 128 ATGTCTTCCTTCACCTCCAAATTCGCCGATGAGCTGATTGCTAACGCTGCTTACATCGGA 187 ||||| | ||||| |||||||||||||||||||| || || || || ||||||||||| Sbjct 1 ATGTCGTGCTTCAAATCCAAATTCGCCGATGAGCTCATCGCCAATGCCGCTTACATCGGT 60 Query 188 ACACCTGGAAAAGGTATCCTTGCGGCAGATGAATCAACTGGTACTATTGGGAAACGTCTC 247 ||||| || |||||||| || || || |||||||| || || || || || |||||| || Sbjct 61 ACACCAGGGAAAGGTATTCTCGCTGCTGATGAATCCACCGGAACAATCGGAAAACGTTTC 120 Query 248 GCTAGCATCAACGTTGAGAACGTTGAATCCAACAGACGTGCTCTTCGTGAGCTTC-TCTT 306 || ||||| |||||||||||||||||||| |||||||||||||||||||||| || | || Sbjct 121 GCAAGCATTAACGTTGAGAACGTTGAATCAAACAGACGTGCTCTTCGTGAGC-TCTTGTT 179 Query 307 CACTACTCCTGGAGCTCTTCC-TTGCCTCAGTGGTGTTATCCTCTTTGAAGAAACTCTTT 365 ||| ||||||||||||| ||| | | |||||||| | |||||||| |||||||| || | Sbjct 180 CACCACTCCTGGAGCTC-TCCAATACATCAGTGGTATCATCCTCTTCGAAGAAACACTCT 238 Query 366 ACCAGAAGAGCT-C-TGATGGTACGCCTTTTGTTGATATGTTGAA-GAGTGCAGGAGT-T 421 ||||||| | || | | | || | || ||||||||| | |||| || || ||||| Sbjct 239 ACCAGAA-AACTGCTTCA-GGGAAACCATTTGTTGATGTAATGAAGGA-AGCTGGAGTGC 295 Query 422 TTGCCTGGTATTAAGGTTGATAAGGGTACCGTTGAGCTTGCTGGAACCAATGGTG-AGAC 480 || || ||||| || || ||||| || ||||||||||| ||||| || || || | | || Sbjct 296 TT-CCAGGTATCAAAGTCGATAAAGGAACCGTTGAGCTCGCTGGTACAAACGGCGNAAAC 354 Query 481 TACTACTCA-AGGTCTTGATGGTCTTGGTGACCGTTGCAAGAAATACTACGAGGCTGGTG 539 || || || || |||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 355 -ACAAC-CATTGGCCTTGATGGACTTGGTGACCGTTGCAAGAAATACTACGAAGCTGGTG 412 Query 540 CTCGTTTCGCCAAGTGGCGTGCGGTTCTTAAGATTGGTGTTAATGAGCCATCTCAGTTAG 599 | ||||| || ||||||||||| ||||| || ||||| | |||||||| ||| |||| | Sbjct 413 CACGTTTTGCTAAGTGGCGTGCTGTTCTCAAAATTGGAGACAATGAGCCTTCTGAGTTGG 472 Query 600 CTATCCATGAGAACGCTTATGGATTGGCTAGGTATGCTGTCATTTGTCAGGAGAACGGTC 659 ||||||||||||| ||||| || || || || ||||| || ||||| || ||||| |||| Sbjct 473 CTATCCATGAGAATGCTTACGGTTTAGCAAGATATGCAGTTATTTGCCAAGAGAATGGTC 532 Query 660 TTGTGCCGATTGTGGAGCCTGAGATTCTTGTTGATGGCTCTCATGACATTCAG-AAGTGT 718 |||| || ||||| || || ||||||||||||||||| ||||| |||||| || || ||| Sbjct 533 TTGTCCCCATTGTTGAACCAGAGATTCTTGTTGATGGATCTCACGACATTGAGCAA-TGT 591 Query 719 GCCGCGGTGACAGAGCGTGTTCTTGCAGCTTGCTACAAGGCTCTGAGTGATCACCATGTC 778 || || || || || |||||||| ||||| |||||||||||||||||||||||||| Sbjct 592 GCTTATGTTACGGAACGAGTTCTTGCGGCTTGTTACAAGGCTCTGAGTGATCACCATGTG 651 Query 779 TTGCT-AGAAGGAACACTCTTGAAACCTAACATGGTTACTCCAGGATCAGAGAGTG---C 834 | || ||||||||||||||||||||| ||||||||||||||||| ||||| |||| | Sbjct 652 AT-CTTAGAAGGAACACTCTTGAAACCAAACATGGTTACTCCAGGTTCAGACAGTGGTTC 710 Query 835 GAAGGTTGCACCAGAGGTGATTGCTGAGCACACTGTCCGTGCTCTT-CAGAGGACAGTTC 893 || ||| |||||| ||||| || |||||||| ||||||||| || |||||||| |||| Sbjct 711 TAAAGTTAAACCAGAAGTGATCGCCGAGCACACGGTCCGTGCT-TTACAGAGGACGGTTC 769 Query 894 CAGCTGCTGTTCCAGCCATAGTGTTCTTGTCTGGTGGACAGAGCGAGGAAGAGGCGACAA 953 | || |||||||| ||| | |||||||||||||| |||||||| || ||||| || || Sbjct 770 CTGCAGCTGTTCCGGCCGTTGTGTTCTTGTCTGGAGGACAGAGTGAAGAAGAAGCAACTG 829 Query 954 -GAAACCTTAACGCGATGAACCAGTTGAA-GACAAAGAAGCCTTGGT-CGTTGTC-TTTC 1009 ||| | | ||||| || || ||| | || | || ||| || ||| | ||| | ||| Sbjct 830 TGAATC-TAAACGCCATTAATCAGCTCAAAGGGAA-GAAACCATGGAGC-TTGACGTTT- 885 Query 1010 TCCTTTGGAAGGGCG-TTGCAGCAGAGCACTTTGAAGACTTGGGGAGGAAAAGAGGAGAA 1068 || | |||| | ||| || || ||||| || | ||| |||||||||| ||||||||||| Sbjct 886 TCGTATGGACGCGCGCTT-CAACAGAGTACACTCAAGGCTTGGGGAGGTAAAGAGGAGAA 944 Query 1069 TGT-GAAGAAGGCTCAAGAAG-CGTTCTTGG-TCAGATGCAAAG-CTAACTCTGAAGCAA 1124 | | || |||||||||| ||| ||||||||| || || || ||| ||||||||||||||| Sbjct 945 TTTTGA-GAAGGCTCAA-AAGGCGTTCTTGGCTC-GA-GCCAAGGCTAACTCTGAAGCAA 1000 Query 1125 CACTTGGTG-CTTACAAGGGTGATGCTAAGCTCGGTGAAGGTGCAGCTGAGAGCCTTCAC 1183 | ||||||| || |||||||||||||| |||||||||||||||| | |||||||||||| Sbjct 1001 CCCTTGGTGGCT-ACAAGGGTGATGCTCAGCTCGGTGAAGGTGCTTCCGAGAGCCTTCAC 1059 Query 1184 GTTAAGGATTACAAGTACT 1202 || || || ||||| |||| Sbjct 1060 GTCAAAGACTACAAATACT 1078 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53554884470 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5