BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36540.1 Length=750 Score E Sequences producing significant alignments: (Bits) Value Ahg482632 jgi|Araly1|482632|fgenesh2_kg.4__1692__AT2G36540.1 536 8e-152 Ahg931192 jgi|Araly1|931192|scaffold_303649.1 122 3e-27 > Ahg482632 jgi|Araly1|482632|fgenesh2_kg.4__1692__AT2G36540.1 Length=717 Score = 536 bits (290), Expect = 8e-152 Identities = 350/379 (92%), Gaps = 3/379 (1%) Strand=Plus/Plus Query 374 GACCAAG-AGAGTGTACGGACAGTGGATATAAAACACTAGAGAACCGTTACAAGCCTTTG 432 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 340 GACCAAGAAGAGTGTACGGACAGTGGATTTAAAACACTAGAGAACCGTTACAAGCCTTTG 399 Query 433 TTCTTTAAGGATCTCTCTAAAGTG-TTCAAGTGCTTTAAAGGCTTCTCTGCTTCAAACAC 491 ||||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||| | Sbjct 400 TTCTTCAAGGATCTCTCCAAAGTGTTTC-AGTGCTTCAAAGGCTTCTCTGCTTCAAATTC 458 Query 492 CATCTTCATTGATGATGAACCATATAAAGCTCTTCGTAATCCTGACAATACTGGTCTGTT 551 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 459 CATCTTCATTGATGATGAACCCTATAAAGCTCTTCGTAATCCTGACAATACTGGTCTGTT 518 Query 552 CCCAATGAGCTATGATGCTTCTAACATAAAGGATAATTTACTTGATCCGGAAGGAGAGTT 611 |||||||||||||| ||||||||| ||| |||| |||||||||||| ||||||||||| Sbjct 519 TCCAATGAGCTATGACCCTTCTAACAAAAATGATAGTTTACTTGATCCAGAAGGAGAGTT 578 Query 612 GTGTTCTTACTTGGAAGGTTTGGCAAAATCATCGGATGTTCAGGCTTACATAAAAGTGCA 671 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 579 CTGTTCTTACTTGGACGGTTTAGCAAAATCATCGGATGTTCAGGCTTACATAAAAGAGCA 638 Query 672 TTCTTTTGGACGGCCCATGATCGATTCTTCTCATCCTGATTGGTCTTTCTACAGCAACGT 731 |||||||||| ||||| |||||||||||||||||| ||||||||||||||| |||| || Sbjct 639 CTCTTTTGGACAGCCCAAGATCGATTCTTCTCATCCCGATTGGTCTTTCTACCGCAAAGT 698 Query 732 TTCAAAGATTGTCTCTTAA 750 || ||||||||||||||| Sbjct 699 GTCGAAGATTGTCTCTTAA 717 Score = 459 bits (248), Expect = 2e-128 Identities = 316/347 (91%), Gaps = 11/347 (3%) Strand=Plus/Plus Query 1 ATGGCTGAAGAAAAGA-TCAAGAAGAGCT-TGC--TTGCTGCGGACGACAGCGACGATGA 56 |||||||||||||| | |||||||||| | | | ||| | | ||||||||||||||||| Sbjct 1 ATGGCTGAAGAAAA-ACTCAAGAAGAG-TAT-CATTTG-TTCCGACGACAGCGACGATGA 56 Query 57 GTACTCAAGAGGTGATACAGTTTCAGATCAGACAGAACTGAGTTCGATTCTTGATAAACT 116 |||||| |||||| || |||||||| |||||||||||||||||||| || | |||||| Sbjct 57 GTACTC---AGGTGACACTGTTTCAGAGCAGACAGAACTGAGTTCGATCCTGGGTAAACT 113 Query 117 TAGTCTAGAACCTAAGACGGAGAAAAAGAAACTCTTGGTCTTGAGTCTAAGTGGTCTTCT 176 |||| ||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 114 TAGTATAGAACCCGAGAAGGAGAAGAAGAAACTCTTGGTCTTGAGTCTAAGTGGTCTTCT 173 Query 177 TCTTCACAGAGTCCACAAAAAAGAGTTGCGTAAGAAACCCAAGAACCGCTCTCCTGATGC 236 ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 174 TCTTCACAGAGTCCACATAAAAGAGATGCGTAAGAAACCCAAGAACCGCTCTCCTGATGC 233 Query 237 TTCTTGTGGGCCAAATCTTGTGTATAAGAGACCGTTTGCTGAAGAGTTTATGAAGTTTTG 296 ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 234 TTCTTGTGGCCCAAATCTTGTGTATAAGAGGCCATTTGCTGAAGAGTTTATGAAGTTTTG 293 Query 297 TCTTGAGAGATTTGAAGTTGGTATTTGGTCCTCTGCTTGCGAGTTAG 343 |||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 294 TCTTGAGAGATTCGAAGTTGGGATTTGGTCCTCTGCTTGCGAGTTAG 340 > Ahg931192 jgi|Araly1|931192|scaffold_303649.1 Length=480 Score = 122 bits (66), Expect = 3e-27 Identities = 82/90 (91%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 423 CAAGCCTTTGTTCTTTAAGGATCTCTCTAAAGTGTTCAAGTGCTTTAAAGGCTTCTCTGC 482 ||||||||||||||||||| |||||||||||||||| ||||||| ||||| | || ||| Sbjct 360 CAAGCCTTTGTTCTTTAAGAATCTCTCTAAAGTGTTTTAGTGCTTCAAAGGGTACTTTGC 419 Query 483 TTCAAACACCATCTTCATTGATGATGAACC 512 |||||||||||||||||||||||||| ||| Sbjct 420 TTCAAACACCATCTTCATTGATGATGGACC 449 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27639114825 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5