BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36580.1
Length=2020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934288 jgi|Araly1|934288|scaffold_402276.1 2713 0.0
Ahg938193 jgi|Araly1|938193|scaffold_502384.1 1943 0.0
> Ahg934288 jgi|Araly1|934288|scaffold_402276.1
Length=1628
Score = 2713 bits (1469), Expect = 0.0
Identities = 1578/1631 (97%), Gaps = 5/1631 (0%)
Strand=Plus/Plus
Query 109 TCTCCGAATTCTGATCAGCAA-CTATGCATTCAAGTCATCTCCTTCTCGAGGAACCGATC 167
||||| ||||| |||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 1 TCTCCCAATTCCGATCAG-AAGCTATGCATTCGAGTCATCTCCTTCTCGAGGAACCGATC 59
Query 168 AGGATGACTTCAATCCTCGAACCTTCTAAATCAAGTTTCTTCCCGGCTTTGACTAAGATT 227
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 AGGATGACTTCTATCCTTGAACCTTCCAAATCAAGTTTCTTCCCGGCTTTGACTAAGATT 119
Query 228 GTTGGGACTCTAGGTCCGAAATCTCGATCCGTCGAGGTGATTGCTGGTTGTCTCAAAGCT 287
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 GTTGGGACTCTAGGTCCGAAATCTCGATCCGTCGAGGTGATTTCTGGTTGTCTCAAAGCT 179
Query 288 GGAATGTCCGTGGCTCGATTCGATTTCTCTTGGTGCGATGCTGATTATCACCAGGAGACG 347
|||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 180 GGAATGTCAGTGGCTCGATTCGATTTCTCTTGGTGTGATGCAGAGTATCACCAGGAGACG 239
Query 348 CTGGAGAATCTGAAGATAGCTGTGAAGAGCACTAAGAAGCTTTGTGCTGTTATGCTAGAC 407
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 240 CTGGAGAATTTGAAGATAGCCGTGAAGAGCACTAAGAAGCTTTGTGCTGTTATGCTGGAC 299
Query 408 ACTGTAGGACCTGAGTTGCAAGTTATTAACAAGACTGAGAAAGCTATTTCTCTTAAAGCT 467
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 ACTGTGGGACCTGAGTTGCAAGTTATTAACAAGACTGAGAAAGCTATTTCTCTTAAGGCC 359
Query 468 GATGGCCTTGTAACTTTGACTCCGAGTCAAGATCAAGAAGCCTCCTCTGAAGTCCTTCCC 527
|||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||
Sbjct 360 GATGGCCTTGTAACTTTGACTCCGAGTCAAGACCAAGAAGCTTCCTCTGAAGTCTTTCCC 419
Query 528 ATTAATTTTGATGGGTTAGCGAAGGCGGTTAAGAAAGGAGACACTATCTTTGTTGGACAA 587
||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 420 ATTAATTTTGATGGGCTAGCCAAGGCAGTTAAGCAAGGAGACACTATCTTTGTTGGACAA 479
Query 588 TACCTCTTCACTGGTAGTGAAACAACTTCAGTTTGGCTTGAGGTTGAAGAAGTTAAAGGA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACCTCTTCACTGGTAGTGAAACAACTTCAGTTTGGCTTGAGGTTGAAGAAGTTAAAGGA 539
Query 648 GATGATGTCATTTGTATTTCAAGGAATGCTGCTACTCTGGGTGGTCCGTTATTCACATTG 707
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 540 GATGATGTCATTTGTATTTCAAGGAATGCTGCTACTCTGGCTGGTCCGTTGTTCACATTG 599
Query 708 CACGTCTCTCAAGTTCACATTGATATGCCAACCCTAACTGAGAAGGATAAGGAGGTTATA 767
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 600 CACGTCTCTCAAGTTCACATTGATATGCCAACCCTCACTCAGAAGGATAAGGAGGTTATA 659
Query 768 AGTACATGGGGAGTTCAGAATAAGATCGACTTTCTCTCATTATCTTATTGTCGACATGCA 827
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 AGTACATGGGGAGTTCAGAATAAGATCGATTTTCTCTCATTATCTTATTGTCGACATGCA 719
Query 828 GAAGATGTTCGCCAGGCCCGTGAGTTGCTTAACAGTTGTGG-TGACCTCTCTCAAACACA 886
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 720 GAAGATGTTCGCCAGGCCCGTGAGTTGCTTAACAGTT-TGGGTGACCTCTCTCAAACACA 778
Query 887 AATATTTGCGAAGATTGAGAATGAAGAGGGACTAACCCACTTTGACGAAATTCTACAAGA 946
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 779 AATATTTGCGAAGATTGAGAATGAAGAGGGACTGACCCACTTCGACGAAATTCTACAAGA 838
Query 947 AGCAGATGGCATTATTCTTTCTCGTGGGAATTTGGGTATCGATCTACCTCCGGAAAAGGT 1006
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 AGCAGATGGCATTATTCTTTCTCGTGGGAATTTGGGTATTGATCTACCTCCGGAAAAGGT 898
Query 1007 GTTTTTGTTCCAAAAGGCTGCTCTTTACAAGTGTAACATGGCTGGAAAGCCTGCCGTTCT 1066
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 899 GTTTTTGTTCCAAAAGGCTGCTCTTTACAAGTGTAACATGGCTGGAAAGCCAGCCGTTCT 958
Query 1067 TACTCGTGTTGTAGACAGTATGACAGACAATCTGCGGCCAACTCGTGCAGAGGCAACTGA 1126
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 959 CACTCGTGTTGTAGACAGTATGACAGACAATCTCCGGCCAACTCGTGCAGAGGCAACTGA 1018
Query 1127 TGTTGCTAATGCTGTTTTAGATGGAAGTGATGCAATTCTTCTTGGTGCTGAGACTCTTCG 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGTTGCTAATGCTGTTTTAGATGGAAGTGATGCAATTCTTCTTGGTGCTGAGACTCTTCG 1078
Query 1187 TGGATTGTACCCTGTTGAAACCATATCAACTGTTGGTAGAATCTGTTGTGAGGCAGAGAA 1246
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TGGATTGTACCCTGTTGAGACCATATCAACTGTTGGTAGAATCTGTTGTGAGGCAGAGAA 1138
Query 1247 AGTTTTCAACCAAGATTTGTTCTTTAAGAAGACTGTCAAGTATGTTGGAGAACCAATGAC 1306
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1139 AGTTTTCAACCAAGATTTGTTCTTCAAGAAGACTGTCAAGTATGTTGGAGAACCAATGAC 1198
Query 1307 TCACTTGGAATCTATTGCTTCTTCTGCTGTACGGGCAGCAATCAAGGTTAAGGCATCCGT 1366
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 1199 TCACTTGGAATCTATTGCTTCTTCTGCTGTACGAGCAGCAATTAAGGTTAAAGCATCCGT 1258
Query 1367 AATTATATGCTTCACCTCGTCTGGCAGAGCAGCAAGGTTGATTGCCAAATACCGTCCAAC 1426
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1259 AATTATATGCTTCACCTCGTCTGGCAGAGCAGCGAGGTTGATTGCCAAATACCGTCCAAC 1318
Query 1427 TATGCCCGTTCTCTCTGTTGTCATTCCCCGACTTACGACAAATCAGCTGAAGTGGAGCTT 1486
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1319 TATGCCCGTTCTCTCTGTTGTCATTCCCCGGCTTACAACAAATCAGCTGAAGTGGAGCTT 1378
Query 1487 TAGCGGAGCCTTTGAGGCAAGGCAGTCACTTATTGTCAGAGGTCTTTTCCCCATGCTTGC 1546
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TAGCGGGGCCTTTGAGGCAAGGCAGTCACTTATTGTCAGAGGTCTTTTCCCCATGCTTGC 1438
Query 1547 TGATCCTCGTCACCCTGCGGAATCAACAAGTGCAACAAATGAGTCGGTTCTTAAAGTGGC 1606
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1439 TGACCCTCGTCACCCTGCGGAATCAACAAGTGCAACAAATGAGTCGGTTCTGAAAGTGGC 1498
Query 1607 TCTAGACCATGGGAAGCAAGCCGGAGTGATCAAGTCACATGACAGAGTTGTGGTCTGTCA 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TCTAGACCATGGGAAGCAAGCCGGAGTGATCAAGTCACATGACAGAGTTGTGGTCTGTCA 1558
Query 1667 GAAAGTGGGAGATGCGTCCGTGGTCAAAATCATCGAGCTAGAGGATTAGAAGAAGCAGAG 1726
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GAAAGTGGGTGATGCGTCCGTGGTCAAAATCATCGAGCTAGAGGATTAGAAGAAGCAGAG 1618
Query 1727 TGAGTCGTTGT 1737
|| ||| ||||
Sbjct 1619 TGCGTC-TTGT 1628
> Ahg938193 jgi|Araly1|938193|scaffold_502384.1
Length=1624
Score = 1943 bits (1052), Expect = 0.0
Identities = 1417/1594 (89%), Gaps = 22/1594 (1%)
Strand=Plus/Plus
Query 132 ATGCATTCAAGTCATCTCCTTCTCGAGGAACCGATCAGGATGACTTCAATCCTCGAACCT 191
|||||||| |||||||| ||||||||||| |||||||||||| |||||||||| || |||
Sbjct 21 ATGCATTCCAGTCATCTTCTTCTCGAGGAGCCGATCAGGATGGCTTCAATCCTTGAGCCT 80
Query 192 TCTAAATCAAGTTTCTTCCCGGCTTTGACTAAGATTGTTGGGACTCTAGGTCCGAAATCT 251
|| ||||| |||||||||||||| ||||||||||| || || ||||| ||||| |||||
Sbjct 81 TCCAAATCTAGTTTCTTCCCGGCATTGACTAAGATCGTCGGAACTCTCGGTCCTAAATCC 140
Query 252 CGATCCGTCGAGG-TGAT-TGCTGGTTGTCTCAAAGCTGGAATGTCCGTGGCTCGATTCG 309
||||||||||||| | | | | || ||||||||||| || ||||| |||||||||||||
Sbjct 141 CGATCCGTCGAGGCT-CTCT-CCGGCTGTCTCAAAGCCGGCATGTCTGTGGCTCGATTCG 198
Query 310 ATTTCTCTTGGTGCGATGCTGATTATCACCAGGAGACGCTGGAGAATCTGAAGATAGCTG 369
||||||||||| | ||||||||||||||||||||||| || || ||||| ||| | ||||
Sbjct 199 ATTTCTCTTGGGGAGATGCTGATTATCACCAGGAGACACTTGATAATCTCAAGGTTGCTG 258
Query 370 TGAAGAGCACTAAGAAGCTTTGTGCTGTTATGCTAGACACTGTAGGACCTGAGTTGCAAG 429
||| |||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||
Sbjct 259 TGAGGAGCACTAAGAAGCTTTGTGCTGTTATGCTTGATACTGTGGGACCTGAGCTACAAG 318
Query 430 TTATTAACAAGA-CTGAGAAAGCTATTTCTCTT-AAAGCTGATGGCCTTGTAACTTTGAC 487
|||||||||| | |||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 319 TTATTAACAA-ATCTGAGAAAGCTATTACT-TTGAAAGCTGATGGCCTTGTAACTTTGAC 376
Query 488 TCCGAGTCAAGATCAAGAAGCCTCCTCTGAAGTCCTTCCCATTAATTTTGA-TGGG-TTA 545
|| | |||||| |||||||| || |||||||| ||||||||||| ||| | |||| ||
Sbjct 377 GCCCAATCAAGACCAAGAAGCTTCTTCTGAAGTTCTTCCCATTAA-TTTCAGTGGGCTT- 434
Query 546 GCGAAGGCGGTTAAGAAAGGAGACACTATCTTTGTTGGACAATACCTCTTCACTGGTAGT 605
|| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 435 GCCAAGGCAGTGAAGAAAGGAGACACTATCTTTGTTGGGCAATACCTCTTCACTGGTAGT 494
Query 606 GAAACAACTTCAGTTTGGCTTGAGGTTGAAGAAGTTAAAGGAGATGATGTCATTTGTATT 665
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 495 GAAACAACTTCAGTTTGGCTTGAGGTTGATGAAGTGAAAGGAGATGATGTCATTTGCCTG 554
Query 666 TCAAGGAATGCTGCTACTCTGGGTGGTCCGT-TATTCACATTGCACGTCTCTCAAGTTCA 724
|||||||||||||||||||||| |||| | | ||||||| || || | ||||||||||||
Sbjct 555 TCAAGGAATGCTGCTACTCTGGCTGGTTC-TCTATTCACTTTACATGCCTCTCAAGTTCA 613
Query 725 CATTGATATGCCAACCCTAACTGAGAAGGATAAGGAGGTTATAAGTACATGGGGAGTTCA 784
|| ||| ||||||| || || ||||||||||||||||||||||| ||||||||||||||
Sbjct 614 TATCGATCTGCCAACTCTCACAGAGAAGGATAAGGAGGTTATAAGCACATGGGGAGTTCA 673
Query 785 GAATAAGATCGACTTTCTCTCATTATCTTATTGTCGACATGCAGAAGATGTTCGCCAGGC 844
||||| ||||| |||||||| || ||||||||||| ||||| || |||||||||||| |
Sbjct 674 AAATAAAATCGATTTTCTCTCGTTGTCTTATTGTCGTCATGCGGAGGATGTTCGCCAGAC 733
Query 845 CCGTGAGTTGCTT-AACAGTTGTGGTGACCTCTCTCAAACACAAATATTTGCGAAGATTG 903
|||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||||
Sbjct 734 CCGTGAAATGCTTAAAAAGTTG-GGCGACCTCTCTCAAACACAAATATTTGCTAAGATTG 792
Query 904 AGAATGAAGAGGGACTAACCCACTTTGACGAAATTCTACAAGAAGCAGATGGCATTATTC 963
|||||| |||||||||||||||||| || || |||||||||||||| |||||||||||||
Sbjct 793 AGAATGTAGAGGGACTAACCCACTTCGATGAGATTCTACAAGAAGCTGATGGCATTATTC 852
Query 964 TTTCTCGTGGGAATTTGGGTATCGATCTACCTCCGGAAAAGGTGTTTTTGTTCCAAAAGG 1023
|||||||||| ||||||||||| ||| |||| || ||||||||||||||||| |||||||
Sbjct 853 TTTCTCGTGGTAATTTGGGTATAGATTTACCCCCAGAAAAGGTGTTTTTGTTTCAAAAGG 912
Query 1024 CTGCTCTTTACAAGTGTAACATGGCTGGAAAGCCTGCCGTTCTTACTCGTGTTGTAGACA 1083
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 913 CTGCTCTTTACAAGTGCAACATGGCTGGAAAGCCAGCCGTTCTTACCCGTGTTGTTGACA 972
Query 1084 GTATGACAGACAATC-TGCGGCCAACTCGTGCAGAGGCAACTGATGTTGCTAATGCTGTT 1142
||||||| ||||| | |||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 973 GTATGACTGACAA-CTTGCGTCCAACTCGTGCTGAGGCAACGGATGTTGCTAATGCTGTT 1031
Query 1143 TTAGATGGAAGTGATGCAATTCTTCTTGGTGCTGAGACTCTTCGTGGATTGTACCCTGTT 1202
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1032 TTAGATGGAAGTGATGCAATTCTTCTTGGTGCTGAGACCCTTCGTGGATTGTACCCTGTT 1091
Query 1203 GAAACCATATCAACTGTTGGTAGAATCTGTTG-TGAGGCAGAGAAAG-TTTTCAACCAAG 1260
|| || || |||||||||||||| |||||| | ||||||||| |||| ||||||| ||||
Sbjct 1092 GAGACAATTTCAACTGTTGGTAGGATCTGT-GCTGAGGCAGA-AAAGGTTTTCAATCAAG 1149
Query 1261 ATTTGTTCTTTAAGAAGACTGTCAAGTATGTTGGAGAACCAATGACTCACTTGGAATCTA 1320
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1150 ATTTGTACTTTAAGAAGACTGTCAAGTATGTTGGAGAACCGATGACTCACTTGGAATCGA 1209
Query 1321 TTGCTTCTTCTGCTGTACGGGCAGCAATCAAGGTTAAGGCATCCGTAATTATATGCTTCA 1380
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1210 TTGCTTCTTCAGCTGTACGGGCAGCCATCAAGGTTAAGGCATCCGTGATTATATGCTTCA 1269
Query 1381 CCTCGTCTGGCAGAGCAGCAAGGTTGATTGCCAAATACCGTCCAACTATGCCCGTTCTCT 1440
|||| ||||| || ||||| |||||||||||||||||| | ||||| ||||| ||| | |
Sbjct 1270 CCTCTTCTGGAAGGGCAGCCAGGTTGATTGCCAAATACAGGCCAACGATGCCGGTTATTT 1329
Query 1441 CTGTTGTCATTCCCCGACTTACGACAAATCAGCTGAAGTGGAGCTTTAGCGGAGCCTTTG 1500
|||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1330 CTGTTGTCATTCCCCGGGTTAAGACAAATCAGCTGAAATGGAGCTTTAGTGGAGCTTTTG 1389
Query 1501 AGGCAAGGCAGTCACTTATTGTCAGAGGTCTTTTCCCCATGCTTGCTGATCCTCGTCACC 1560
|||| ||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||
Sbjct 1390 AGGCGAGGCAGTCACTTATTGTAAGAGGTCTCTTCCCAATGCTCGCTGACCCTCGTCACC 1449
Query 1561 CTGCGGAATCAACAAGTGCAACAAATGAGTCGGTTCTTAAAGTGGCTCTAGACCATGGGA 1620
|||||||||| |||||||| ||||| ||||| || || || || ||||||||||||||||
Sbjct 1450 CTGCGGAATCTACAAGTGCGACAAACGAGTCAGTCCTGAAGGTTGCTCTAGACCATGGGA 1509
Query 1621 AGCAAGCCGGAGTGATCAAGTCACATGACAGAGTTGTGGTCTGTCAGAAAGTGGGAGATG 1680
|||| || ||||| |||||||| ||||||||||| ||||| ||||||||||| || ||||
Sbjct 1510 AGCATGCTGGAGTTATCAAGTCGCATGACAGAGTAGTGGTGTGTCAGAAAGTTGGTGATG 1569
Query 1681 CGTCCGTGGTCAAAATCATCGAGCTAGAGGATTA 1714
| || ||||| || || |||||||| ||||||||
Sbjct 1570 CATCTGTGGTTAAGATTATCGAGCTTGAGGATTA 1603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75951948530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5