BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36620.1 Length=777 Score E Sequences producing significant alignments: (Bits) Value Ahg482640 jgi|Araly1|482640|fgenesh2_kg.4__1700__AT2G36620.1 1050 0.0 Ahg485677 jgi|Araly1|485677|fgenesh2_kg.5__1669__AT3G53020.1 481 4e-135 > Ahg482640 jgi|Araly1|482640|fgenesh2_kg.4__1700__AT2G36620.1 Length=729 Score = 1050 bits (568), Expect = 0.0 Identities = 695/751 (93%), Gaps = 30/751 (4%) Strand=Plus/Plus Query 35 AGATTTTTTAGGGTTTCAAGTGAAAAGAGTAA-TAGCGCGGCGGAGCCATGGTTCTCAAG 93 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1 AGATTTTTTAGGGTTTCGAGTGAAAAGAGTAACAAGCGCGGCGGAGCCATGGTTCTCAAG 60 Query 94 ACTGAGCTTTGCCGATTCAGTGGCCAGAAAATTTACCCTGGTAGAGGGATCAGATTTATC 153 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| Sbjct 61 ACTGAGCTTTGCCGATTCAGTGGTCAGAAGATTTACCCTGGTAGAGGAATCAGATTTATC 120 Query 154 CGATCGGACTCTCAGGTGTTTTTGTTT-CTCAACTCCAAATGTAAGAGGTATTTCCACAA 212 ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 121 CGATCCGACTCTCAGGTGTTTTTGTTTGC-CAACTCCAAATGTAAGAGGTATTTCCACAA 179 Query 213 CAAGTTGAAGCCATCTAAGCTTTGC-TGGACTGCTATGTACCGAAAGCAGCACAAGAAGG 271 |||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| Sbjct 180 CAAGTTGAAGCCATCTAAGC-TTACATGGACTGCTATGTACCGAAAGCAGCACAAGAAGG 238 Query 272 ACGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCAACTAAGAAGCCTTACTCAAGGT 331 ||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct 239 ACGCAGCACAAGAGGCTGTCAAGAGAAGGAGACGTGCTACCAAGAAGCCTTACTCAAGGT 298 Query 332 CGATTGTCGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGAGCAGAGAAGCCTGAAGTTC 391 ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 299 CGATTGTTGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGTGCAGAGAAGCCCGAAGTTC 358 Query 392 GTGATGCCGCTAGAGAAGCTGCCCTACGTGAGATCAAGGAGAGAATCAAGAAGACCAAGG 451 ||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 359 GTGATGCAGCCAGAGAAGCTGCACTACGTGAGATAAAGGAGAGAATCAAGAAGACCAAGG 418 Query 452 ACGAGAAGAAGGCAAAGAAGGTCGAGTATGCATCAAAGCAACAGAAGTCACAAGTGAAGG 511 ||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| Sbjct 419 ACGAGAAGAAGGCTAAGAAGGTCGAGTATTCTTCCAAGCAACAGAAGTCACAAGTGAAGG 478 Query 512 GAAATATCCCCAAGAGTGCTGCACCCAAGGCTGCTAAGATGGGTGGTGGTGGAGGCAGAC 571 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 479 GAAATATCCCCAAGAGTACTGCACCCAAGGCTGCTAAGATGGGCGGTGGTGGAGGCAGAC 538 Query 572 GTTGAATGGAGCTATAGAGTAGCCCACtcttctctcttcacttatctttctttcttgttt 631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GTTGAATGGAGCTATAGAGTAGCCCACTCTTCTCTCTTCACTTATCTTTCTTTCTTGTTT 598 Query 632 tgacattgttttgttttgtcagccattttttagttttgCACCAGATCTAATATATTCAGT 691 ||||||| |||| || || |||| | |||||||||||||||||||||| Sbjct 599 TGACATT-TTTT-TT-----AG---TTTT---G-----CACCAGATCTAATATATTCAGT 640 Query 692 TTATGAAAACTTTTTGTTTGGT-ATCAATCCCCTTGTGTTTT--ACTCGT-AGATCCAAA 747 |||||||||||||||||||||| |||||| ||||||||||| |||||| | ||||||| Sbjct 641 TTATGAAAACTTTTTGTTTGGTTATCAATTACCTTGTGTTTTTTACTCGTGATATCCAAA 700 Query 748 AACTGCTAAATAGAATTT-TCAACTTGGCTT 777 |||||| ||||||||||| | |||||||||| Sbjct 701 AACTGC-AAATAGAATTTGT-AACTTGGCTT 729 > Ahg485677 jgi|Araly1|485677|fgenesh2_kg.5__1669__AT3G53020.1 Length=695 Score = 481 bits (260), Expect = 4e-135 Identities = 415/488 (85%), Gaps = 17/488 (3%) Strand=Plus/Plus Query 97 GAGCTTTGCCGATTCAGTGGCCAGAAAATTTACCCTGGTAGAGGGATCAGATTTATCCGA 156 |||||||| || |||||||||||||| |||||||| || ||||| || || ||||||||| Sbjct 4 GAGCTTTGTCGTTTCAGTGGCCAGAAGATTTACCCAGGAAGAGGAATTAGGTTTATCCGA 63 Query 157 TCGGACTCTCAGGTGTTT-TTGTTT-CTCAACTCCAAA-TGTAAGAGGTATTTCCACAAC 213 || || |||||||| ||| |||||| || |||| |||| ||||||||||| ||||| ||| Sbjct 64 TCTGATTCTCAGGT-TTTCTTGTTTGCT-AACT-CAAAGTGTAAGAGGTACTTCCATAAC 120 Query 214 AAGTTGAAGCCATCTAAGCTTTGC-TGGACTGCTATGTACCGAAAGCAGCACAAGAAGGA 272 |||||||||||||| |||| || | |||||||| |||||| ||||||| ||||||||||| Sbjct 121 AAGTTGAAGCCATCCAAGC-TTACATGGACTGCCATGTACAGAAAGCAACACAAGAAGGA 179 Query 273 CGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCAACTAAGAAGCCTTACTCAAGGTC 332 ||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||| Sbjct 180 TGCAGCGCAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTC 239 Query 333 GATTGTCGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGAGCAGAGAAGCCTGAAGTTCG 392 ||||| |||||||| |||||||| |||||||||||| |||| ||||||||||||||||| Sbjct 240 CATTGTTGGTGCTACCTTGGAGGTGATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCG 299 Query 393 TGATGCCGCTAGAGAAGCTGCCCTACGTGAGATCAAGGAGAGAATCAAGAAGACCAAGGA 452 |||||| || ||||||||||| || |||||||||||||| ||||| || |||||||| || Sbjct 300 TGATGCTGCCAGAGAAGCTGCTCTGCGTGAGATCAAGGAAAGAATTAAAAAGACCAAAGA 359 Query 453 CGAGAAGAAGGCAAAGAAGGTCGAGTATGCATCAAAGCAACAGAAGTCACAAGTGAAGGG 512 || |||||||| |||||||| || | ||| || |||||||||||| ||||||| Sbjct 360 TGAAAAGAAGGCTAAGAAGGTGGAATTTGCTTCTAAGCAACAGAAG------GTGAAGGC 413 Query 513 AAATATCCCCAA-GA-G-TGCTGCACCCAAGGCTGCTAAGATGGGTGGTGGTGGAGGCAG 569 ||| ||||||| | | ||||||| |||||| | ||||| |||| |||||||| |||| Sbjct 414 TAATTTCCCCAAAGCTGCTGCTGCATCCAAGGGTCCTAAGTTGGGAGGTGGTGGTGGCAA 473 Query 570 ACGTTGAA 577 ||| |||| Sbjct 474 ACGCTGAA 481 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28668433584 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5