BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36630.1
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934293 jgi|Araly1|934293|scaffold_402281.1 2202 0.0
> Ahg934293 jgi|Araly1|934293|scaffold_402281.1
Length=1432
Score = 2202 bits (1192), Expect = 0.0
Identities = 1354/1431 (95%), Gaps = 15/1431 (1%)
Strand=Plus/Plus
Query 107 TTAGGGTTTTGTATTAGAAGAATGGGATTGTGGAATGGAAAAGGCACCGGAGGATTTATC 166
|||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TTAGGGTTTTAT-TTAGAAGAATGGGATTGTGGAATGGAAAAGGTACCGGAGGATTTATC 59
Query 167 CTCTACCTTCTCGTGGCTTTCTCCGTCGCCGTCTTCTCTGTTTCTTACGTCGGAGACACA 226
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTCTACCTTCTCGTGGGTTTCTCCGTCGCCGTCTTCTCTGTTTCTTACGTCGGAGACACA 119
Query 227 ACAAACCCT-AT--TCATCATCA----tc-t-ct-ct-t-ctctctctGCCACCGAAAAA 274
||||||||| || ||||||||| || | || || | ||||||||||||||||||||
Sbjct 120 ACAAACCCTAATCATCATCATCATCTCTCTTCCTCCTCTCCTCTCTCTGCCACCGAAAAA 179
Query 275 ATTTGGCCGGATTTGAAGTTTAGCTGGAAACTTGTGTTGGCTACAGTGATAGCGTTTCTA 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTTGGCCGGATTTGAAGTTTAGCTGGAAACTTGTGTTGGCTACAGTGATAGCGTTTCTA 239
Query 335 GGATCAGCTTGTGGGACTGTTGGTGGTGTTGGAGGTGGTGGGATTTTTGTTCCTATGCTC 394
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 GGATCAGCTTGTGGGACTGTTGGTGGTGTTGGAGGCGGTGGGATTTTTGTTCCTATGCTC 299
Query 395 ACTCTTATACTCGGGTTCGATACAAAATCCGCAGCTGCAATATCAAAATGTATGATAATG 454
||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 ACTCTCATTCTCGGGTTTGATACAAAATCCGCAGCAGCAATATCAAAATGTATGATAATG 359
Query 455 GGAGCATCAGCATCATCAGTTTGGTACAATGTACGAGTTCGTCATCCGACAAAAGAAGTA 514
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 GGAGCATCAGCATCATCAGTTTGGTACAATGTAAGAGTTCGTCATCCGACAAAAGAAGTA 419
Query 515 CCAATCTTAGATTATGATCTTGCTCTTCTCTTTCAACCAATGCTTCTTCTCGGTATCACT 574
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 CCAATCTTAGACTATGATCTTGCTCTTCTTTTTCAACCAATGCTTCTTCTCGGTATCACT 479
Query 575 GTTGGTGTTTCTCTCAGTGTTGTGTTCCCTTATTGGCTCATTACTGTCCTCATCATCATT 634
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 480 GTTGGTGTTTCTCTCAGTGTTGTTTTCCCTTACTGGCTCATCACTGTCCTCATCATCATT 539
Query 635 CTTTTCGTCGGTACTTCTTCGAGATCtttttttAAAGGCATTGAGATGTGGAAGGAAGAG 694
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 CTTTTCGTTGGTACTTCTTCGAGATCTTTCTTTAAAGGCATTGAGATGTGGAAGGAAGAG 599
Query 695 ACATTGTTAAAGAACGAAATGGCGCAGCAACGAGCTAATATGGTTAATTCCCGGGGAGAA 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACATTGTTAAAGAACGAAATGGCGCAGCAACGAGCTAATATGGTTAATTCCCGGGGAGAA 659
Query 755 CTTTTAATCGATACAGAGTATGAGCCGCTTTACCCGAGAGAAGAAAAATCAGAGCTGGAA 814
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 CTTTTAATCGACACAGAGTATGAGCCGCTTTACCCGAGAGAAGAGAAATCAGAGCTGGAA 719
Query 815 ATAATACGCTCCAACCTCAAATGGAAAGGGCTTCTAATTCTAGTAACTGTGTGGTT-GAC 873
||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| | |
Sbjct 720 ATAATACGCTCCAACCTCAAATGGAAACGGCTTCTAGTTCTGGTAACTGTGTGGTTTG-C 778
Query 874 TTTCTTGCTCATTCAAATTGTCAAGAACGAAATAAAGGTCTGCAGCACAATATATTGGAT 933
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTCTTGCTCATCCAAATTATCAAGAACGAAATAAAGGTCTGCAGCACAATATATTGGAT 838
Query 934 ACTATTCATCGTACAGTTCCCAGTTGCTTTAGCGGTGTTTGGGTTTGAAGCAAGCAAATT 993
||||||| || ||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 839 ACTATTCGTCTTACAGTTCCCAGTTGCTTTAGCGGTGTTTGGATTTGAAGCGATAAAATT 898
Query 994 GTATACAGCGAACAAAAAGAGGTTAAACAGTGGCAACACTGAATGTATCTGTGAAGCTAC 1053
||| |||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||
Sbjct 899 GTACACAGAGAACAAAAAGAGGCTAAGCAGTGGAAACACTGAATGTATCTGTGAAGCTAC 958
Query 1054 GATTGAGTGGACTCCTCTGAGTCTAATCTTCTGTGGTCTCTGTGGTCTCATTGGAGGTAT 1113
||| ||||||||||||||||||||||| |||||||||||||||||| || ||||||| ||
Sbjct 959 GATCGAGTGGACTCCTCTGAGTCTAATATTCTGTGGTCTCTGTGGTGTCGTTGGAGGCAT 1018
Query 1114 CGTAGGTGGTCTCCTTGGATCCGGTGGTGGATTTGTTCTCGGGCCTTTGCTTCTTGAGAT 1173
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1019 CGTAGGTGGTCTCCTCGGATCCGGTGGTGGATTTGTTCTCGGTCCTTTGCTTCTTGAAAT 1078
Query 1174 TGGAGTCATCCCACAGGTTGCTAGCGCAACAGCTACCTTTGTGATGATGTTTTCTTCGTC 1233
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1079 TGGAGTCATCCCACAGGTTGCTAGCGCGACAGCTACCTTTGTGATGATGTTTTCTTCGTC 1138
Query 1234 CTTATCCGTAGTCGAGTTCTATCTCCTCAAGAGATTCCCAATACCATACGCAATGTACTT 1293
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 1139 TTTATCCGTAGTCGAGTTCTATCTCCTCAAAAGATTCCCAATCCCATACGCAATGTATTT 1198
Query 1294 GATTTCGGTATCGATTCTTGCCGGTTTTTGGGGACAATCCTTTATAAGAAAGCTCGTGGC 1353
|||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1199 GATTTCGGTATCAATTCTTGCCGGTTTTTGGGGACAATCCTTTATCAGAAAACTTGTGGC 1258
Query 1354 GATCCTGAGAAGAGCTTCCATAATCGTTTTCGTTCTCTCAGGAGTCATTTGTGCAAGTGC 1413
|| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1259 CATTCTGAAAAGAGCTTCCATCATCGTTTTCGTTCTCTCAGGAGTCATTTGTGCCAGTGC 1318
Query 1414 TCTCACAATGGGAGTGATTGGGATAGAGAAGAGCATAAAGATGATACATAACCATGAATT 1473
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TCTCACAATGGGAGTAATAGGGATAGAGAAGAGCATAAAGATGATACATAACCATGAATT 1378
Query 1474 CATGGGATTCTTAGGATTCTGCAGCAGTCAATGAATCAACCATCTATCTGA 1524
|||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 1379 CATGGGATTCTTGGGATTCTGCAGCAGTCAATGAATCTTCAATCTATCTGA 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66924560465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5