BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36640.1 Length=1592 Score E Sequences producing significant alignments: (Bits) Value Ahg482642 jgi|Araly1|482642|fgenesh2_kg.4__1702__AT2G36640.1 1930 0.0 > Ahg482642 jgi|Araly1|482642|fgenesh2_kg.4__1702__AT2G36640.1 Length=1392 Score = 1930 bits (1045), Expect = 0.0 Identities = 1292/1410 (92%), Gaps = 21/1410 (1%) Strand=Plus/Plus Query 37 TTTCAAGCAATCGAGAAAAAAGCAATGGCGTCAGACAAACAAAAGGCGGAGAGAGCCGAG 96 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 1 TTTCAAGCAATCGAGGAAAAAGCAATGGCGTCAGACCAACAAAAGGCGGAGAGAGCTGAG 60 Query 97 GTTGCGGCGAGGCTAGCGGCTGAGGACTTGCATGACATTAACAAATCCGGTGGTGCTGAT 156 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 61 GTTGCGGCGAGGGTCGCGGCTGAGGACTTGCATGACATTAACAAATCTGGTGGTGGTGAT 120 Query 157 GTCACAATGTATAAGGTGACGGAGAGAACAACTGAACATCCACCGGAGCAAGATAGGCCC 216 |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| Sbjct 121 GTCACAATGTATAAGGTGACGGAGAGAACAACGGAACATCCACCGGAGCAGGAGAGGCCC 180 Query 217 GGTGTGATAGGATCAGTGTTCAGGGCTGTCCAAGGAACGTATGAGCATGCGAGAGACGCT 276 ||||| |||||||| ||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 181 GGTGTAATAGGATCGGTGTTCAGGGCTGTCCAAGGAACATATGAGCACGCTAGAGACGCT 240 Query 277 GTAGTTGGAAAAACCCACGAAGCGGCTGAGTCTACCAAAGAAGGAGCTCAGATAGCTTCA 336 |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| Sbjct 241 GTAGTTGGAAAAACCCACGATGCGGCCGAGTCGACCAAAGAAGGAGCTCAGATAGCCTCA 300 Query 337 GAGAAAGCGGTTGGAGCAAAGGACGCAACCGTCGAGAAAGCTAAGGAAACCGCTGATTAT 396 ||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||||| Sbjct 301 GAGAAAGCGGTTGGAGCAAAGGATGCAACCGTCGAGAAGGCTAGGGATACCGCTGATTAT 360 Query 397 ACTGCGGAGAAGGTGGGTGAGTATAAAGACTATACGGTTGATAAAGCTAAAGAGGCTAAG 456 || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACGGCGGACAAGATGGGTGAGTATAAAGACTATACGGTTGATAAAGCTAAAGAGGCTAAG 420 Query 457 GACACA-ACTGCAGAGAAGGCGAAGGAGACTGCTAA-TTATACTGCGGATAAGGCGGTGG 514 |||| | |||||||||||||| |||||||| || || |||||| |||||||||||||||| Sbjct 421 GACA-AGACTGCAGAGAAGGCAAAGGAGACCGC-AAGTTATACCGCGGATAAGGCGGTGG 478 Query 515 AAGCAAAGGATAAGACGGCGGAGAAGATTGGTGAGTACAAAGACTATGCGGTGGATAAGG 574 |||||||||| |||| |||||||||||| ||||| || || |||||||||||| |||||| Sbjct 479 AAGCAAAGGACAAGAAGGCGGAGAAGATGGGTGAATATAAGGACTATGCGGTGTATAAGG 538 Query 575 CAGTAGAAGCTAAAGATAAGACAGCGGAGAAGGCGAAGGAGACTGCGAATTATACGGCGG 634 |||||||||| || |||||| | | | || ||||||||||||||||||||||| Sbjct 539 CAGTAGAAGCGAAGGATAAG--A-C-----A-GC---GGAGACTGCGAATTATACGGCGG 586 Query 635 ATAAGGCTAAAGAGGCTAAGGACAAGACGGCTGAGAAGGTTGGTGAGTATAAGGATTACA 694 ||||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||| Sbjct 587 ATAAGGCTAAAGAGGCTAAGGACAAAACCGCTGAGAAGATGGGTGAGTATAAGGATTACA 646 Query 695 CGGTGGACAAGGCCGTGGAAGCTAGGGATTACACAGCGGAGAAGGCTATTGAAGCAAAGG 754 ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 647 CGGTGGACAAGGCTGTGGAAGCTAAGGATTACACAGCAGAGAAGGCTATTGAAGCAAAGG 706 Query 755 ATAAGACAGCTGAGAAGACTGGAGAGTATAAGGACTATACGGTGGAGAAGGCGACGGAGG 814 ||||||| || || ||| | |||||||||||||| |||||||||||||||| ||| |||| Sbjct 707 ATAAGACTGCGGATAAGGCCGGAGAGTATAAGGATTATACGGTGGAGAAGGGGACTGAGG 766 Query 815 GGAAAGATGTTACGGTGAGTAAGCTAGGAGAGCTGAAGGATAGTGCCGTTGAGACAGCGA 874 | ||||||||| |||||||||||| |||||| ||||||||||||| || || ||||| | Sbjct 767 GAAAAGATGTTGGGGTGAGTAAGCTTGGAGAGTTGAAGGATAGTGCGGTGGAAACAGCAA 826 Query 875 AGAGAGCTATGGGTTTCTTGTCGGGGAAGACAGAGGAGGCCAAAGGAAAAGCTGTGGAGA 934 |||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 827 AGAGAGCTATGGATTTCTTGTCTGGGAAGACAGAGGAGGCCAAAGAAAAAGCTGTGGAGA 886 Query 935 CCAAAGATACTGCCAAGGAAAACATGGAGAAAGCTGGAGAAGTAACAAGACAAAAGATGG 994 ||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||| Sbjct 887 CCAAAGACACTGCCAAGGAAAACATTGAGAAAGCTGGAGAAGTAACGAGGCAAAAGATGG 946 Query 995 AGGAAATGAGATTGGAAGGTAAAGAGCTCAAAGAAGAAGCTGGAGCAAAAGCCCAAGAGG 1054 ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||| Sbjct 947 AGGAAATGAGATTGGAAGGTAAAGAACTCAAAGACGAAGCTGGAGCAAAGGCCCACGAGG 1006 Query 1055 CATCTCAAAAGACTAGGGAGAGTACTGAGTCGGGAGCTCAAAAAGCCGAAGAGACCAAAG 1114 |||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||| Sbjct 1007 CATCTCAAAAGACTAGGGAGAGTACTGACTCGGCTGCTGAAAAAGCCCAAGAGACCAAAG 1066 Query 1115 ATTCTGCTGCCGTGAGGGGAAATGAAGCGAAAGG-GACTATTTTTGGTGCATTAGGGAAT 1173 ||||||||||||| ||||| |||||||| ||||| |||||| ||||| ||||||||||| Sbjct 1067 ATTCTGCTGCCGTTAGGGGCAATGAAGC-AAAGGTGACTATACTTGGTACATTAGGGAAT 1125 Query 1174 GTAACGGAAGCAATAAAGAGCAAACTGACAATGCCATCAGACATTGTGGAGGAAACACGC 1233 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1126 GTAACGGAAGCCATAAAGAGCAAACTGACGATGCCATCAGACATTGTGGAGGAGACACGA 1185 Query 1234 GCGGCACGTGAGCATGGAGGGACGGGTAGGACTGTGGTTGAAGTCAAGGTCGAGGATTCA 1293 |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| || Sbjct 1186 GCGGCACGTGAGCATGGAGGCACGGGTAGGACGGTGGTTGAAGTCAAGGTCGAAGATACA 1245 Query 1294 AAGCCGGGTAAGGTGGCGACTTCACTGAAGGCGTCGGATCAAATGACCGGTCAAACATTC 1353 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1246 AAGCCGGGTAAGGTGGCGACTTCACTGAAAGCGTCGGATCAAATGACCGGTCAAACATTC 1305 Query 1354 AACGACGTTGGACGGATGGATGATGATGCTCGGAAAGATAAGGGAAAGCTGTGAGAATAC 1413 ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| Sbjct 1306 AACGATGTTGGACGGATGGATGATGGCGCTCGGAAAGATAAGGGAAAGCTCTGAGA-TAC 1364 Query 1414 TAGAAAAATGACAAtgttttttgggccttt 1443 ||||||| ||||| ||||||||||| |||| Sbjct 1365 TAGAAAA-TGACA-TGTTTTTTGGGTCTTT 1392 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59649323670 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5