BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36724.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value Ahg482655 jgi|Araly1|482655|fgenesh2_kg.4__1715__AT2G36724.1 636 0.0 > Ahg482655 jgi|Araly1|482655|fgenesh2_kg.4__1715__AT2G36724.1 Length=408 Score = 636 bits (344), Expect = 0.0 Identities = 388/409 (95%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 2 ATCCATTGATCAACATaaacgaaaaagaaagaaaa-aaacacacacaaacagatacaaca 60 ||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| Sbjct 1 ATCCATTGATCAACATAAACGAAAAAGAAAGAAAATAAAAACACACAAACATATACAACA 60 Query 61 aaaaTGGGTAAGAATTTGAGCATGATGTTGATGATGGTGATGATAATAGT-GGCGATTCT 119 || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | Sbjct 61 AAGATGGGTAAGAATTTGAGCATGATGTTGATGATGGTGATGATAATA-TCGGCGATTGT 119 Query 120 GATCGGAGGTGAAGCAAAATCGGAGATAGAATGCAGTATTTTGTGTCGTCCCCATTGTAA 179 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 120 GATCGGAGGTGAAGCAAAATCGGAGGTAGAATGCAGTATTTTGTGTCGTCCCCATTGTAA 179 Query 180 AAGCTCATCATCAGCTGGAGAATGTTCTGACTGTCATAGAAAATGTGAGCAATCTCCACC 239 ||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 180 AAGCTCATCATCAGCCGGGGAATGTTCTGACTGTCATAGAAAGTGTGACCAATCTCCACC 239 Query 240 ATCAGTGAAGAAACAGATTCTTAAGAACGAGAACATGACCAAAAA-ATATGATATACTTG 298 ||| |||||||||||||||||||||||| || |||||| |||||| ||||||| |||||| Sbjct 240 ATCTGTGAAGAAACAGATTCTTAAGAACCAGCACATGAGCAAAAATATATGATCTACTTG 299 Query 299 ACTAATTTATAACATATATGATGATTGTATGATTGTATCGATGGACACTTTAGTCCAACT 358 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 300 ACTAATTTATAACATATATGATGATTGTATGAGTGTATCGATGGACACTTTAGTCCAATT 359 Query 359 GTTGTTGCTTATGTACTTCTATATTATCTTTTAATAATAAGAAGAGAAA 407 ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GTTCTTGCTTATGTACTTCTATATTATCTTTTAATAATAAGAAGAGAAA 408 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14880679710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5