BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G36724.1

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482655 jgi|Araly1|482655|fgenesh2_kg.4__1715__AT2G36724.1         636    0.0  


> Ahg482655 jgi|Araly1|482655|fgenesh2_kg.4__1715__AT2G36724.1
Length=408

 Score =  636 bits (344),  Expect = 0.0
 Identities = 388/409 (95%), Gaps = 4/409 (1%)
 Strand=Plus/Plus

Query  2    ATCCATTGATCAACATaaacgaaaaagaaagaaaa-aaacacacacaaacagatacaaca  60
            ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct  1    ATCCATTGATCAACATAAACGAAAAAGAAAGAAAATAAAAACACACAAACATATACAACA  60

Query  61   aaaaTGGGTAAGAATTTGAGCATGATGTTGATGATGGTGATGATAATAGT-GGCGATTCT  119
            || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct  61   AAGATGGGTAAGAATTTGAGCATGATGTTGATGATGGTGATGATAATA-TCGGCGATTGT  119

Query  120  GATCGGAGGTGAAGCAAAATCGGAGATAGAATGCAGTATTTTGTGTCGTCCCCATTGTAA  179
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  120  GATCGGAGGTGAAGCAAAATCGGAGGTAGAATGCAGTATTTTGTGTCGTCCCCATTGTAA  179

Query  180  AAGCTCATCATCAGCTGGAGAATGTTCTGACTGTCATAGAAAATGTGAGCAATCTCCACC  239
            ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct  180  AAGCTCATCATCAGCCGGGGAATGTTCTGACTGTCATAGAAAGTGTGACCAATCTCCACC  239

Query  240  ATCAGTGAAGAAACAGATTCTTAAGAACGAGAACATGACCAAAAA-ATATGATATACTTG  298
            ||| |||||||||||||||||||||||| || |||||| |||||| ||||||| ||||||
Sbjct  240  ATCTGTGAAGAAACAGATTCTTAAGAACCAGCACATGAGCAAAAATATATGATCTACTTG  299

Query  299  ACTAATTTATAACATATATGATGATTGTATGATTGTATCGATGGACACTTTAGTCCAACT  358
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct  300  ACTAATTTATAACATATATGATGATTGTATGAGTGTATCGATGGACACTTTAGTCCAATT  359

Query  359  GTTGTTGCTTATGTACTTCTATATTATCTTTTAATAATAAGAAGAGAAA  407
            ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GTTCTTGCTTATGTACTTCTATATTATCTTTTAATAATAAGAAGAGAAA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14880679710


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5