BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36800.1
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482660 jgi|Araly1|482660|fgenesh2_kg.4__1720__AT2G36800.1 2453 0.0
Ahg934312 jgi|Araly1|934312|scaffold_402300.1 1515 0.0
Ahg482658 jgi|Araly1|482658|fgenesh2_kg.4__1718__AT2G36750.1 1118 0.0
> Ahg482660 jgi|Araly1|482660|fgenesh2_kg.4__1720__AT2G36800.1
Length=1552
Score = 2453 bits (1328), Expect = 0.0
Identities = 1479/1553 (95%), Gaps = 5/1553 (0%)
Strand=Plus/Plus
Query 4 CAAAACTTGAGAGTTTCTTACTAAGGTTGAATCATGGTTTCCGAAACAACC-A--AATCT 60
||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 1 CAAAACTTGAGTGTTTCTTACTAAGGTTGAATCATGGTTTCTGAAACAACCAACGAATCT 60
Query 61 TCTCCACTTCACTTTGTTCTCTTCCCTTTCATGGCTCAAGGCCACATGATTCCCATGGTT 120
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATCCACTTCACTTTGTTCTTTTCCCTTTCATGGCTCAAGGCCACATGATTCCCATGGTT 120
Query 121 GATATTGCAAGGCTCTTGGCTCAGCGTGGTGTGATCATAACAATTGTCACGACGCCTCAC 180
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 GATATTGCAAGGCTCTTGGCTCAGCGCGGTGTGATTATAACAATTGTCACGACGCCTCAC 180
Query 181 AATGCAGCGAGGTTCAAGAATGTCCTAAACCGTGCCATTGAGTCTGGCTTGCCCATCAAC 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AATGCAGCGAGGTTCAAGAATGTCCTAAACCGAGCCATTGAGTCTGGCTTGCCCATCAAC 240
Query 241 TTAGTGCAAGTCAAGTTTCCATATCTAGAAGCTGGTTTGCAAGAAGGACAAGAGAATATC 300
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 CTAGTGCAAGTCAAGTTTCCATATCAAGAAGCTGGTTTGCAAGAAGGACAAGAGAATATC 300
Query 301 GATTCTCTTGACACAATGGAGCGGATGATACCTTTCTTTAAAGCGGTTAACTTTCTCGAA 360
||||||||||| ||||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct 301 GATTCTCTTGAGACAATGGAGAGGATGATATCTTTCTTTAAAGCGGTTAACTTGCTCGAA 360
Query 361 GAACCAGTCCAGAAGCTCATTGAAGAGATGAACCCTCGACCAAGCTGTCTAATTTCTGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAACCAGTCCAGAAGCTCATTGAAGAGATGAACCCTCGACCAAGCTGTCTAATTTCTGAT 420
Query 421 TTTTGTTTGCCTTATACAAGCAAAATCGCCAAGAAGTTCAATATCCCAAAGATCCTCTTC 480
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 TTCTGTTTGCCTTATACAAGCAAAATCTCCAAGAAGTTCAATATCCCAAAGATCCTCTTC 480
Query 481 CATGGCATGGGTTGCTTTTGTCTTCTGTGTATGCATGTTTTACGCAAGAACCGTGAGATC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CATGGCATGGGTTGCTTTTGTCTTCTGTGTATGCATGTTTTACGCAAGAACCGTGAGATC 540
Query 541 TTGGACAATTTAAAGTCAGATAAGGAGCT-TTTCACTGTTCCTGATTTTCCTGATAGAGT 599
||||||||||||||||| ||||||||| | ||||||||||||| |||||||||| |||||
Sbjct 541 TTGGACAATTTAAAGTCTGATAAGGAG-TATTTCACTGTTCCTTATTTTCCTGACAGAGT 599
Query 600 TGAATTCACAAGAACGCAAGTTCCGGTAGAAACATATGTTCCAGCTGGAGACTGGAAAGA 659
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAATTCACAAGACCTCAAGTTCCGGTAGAAACATATGTTCCAGCTGGAGACTGGAAAGA 659
Query 660 TATCTTTGATGGTATGGTAGAAGCGAATGAGACATCTTATGGTGTGATCGTCAACTCATT 719
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 GATCTTCGATGGTATGGTAGAAGCGAATGAGACATCTTATGGTGTGATAGTCAACTCATT 719
Query 720 TCAAGAGCTCGAGCCTGCTTATGCCAAAGACTACAAGGAGGTAAGGTCCGGTAAAGCATG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCAAGAGCTCGAGCCTGCTTATGCCAAAGACTACAAGGAGGTAAGGTCCGGTAAAGCATG 779
Query 780 GACCATTGGACCCGTTTCCTTGTGCAACAAGGTAGGAGCCGACAAAGCAGAGAGGGGAAA 839
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GACCATTGGACCAGTTTCCTTGTGCAACAAGGTAGGAGCAGACAAAGCAGAGAGGGGAAA 839
Query 840 CAAATCAGACATTGATCAAGATGAGTGCCTTAAATGGCTCGATTCTAAGAAACATGGCTC 899
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 840 CAAATCAGACATTGATCAAGATGAGTGCCTTAAATGGCTCGATTCTAAGGAACCGGGCAC 899
Query 900 GGTGCTTTACGTTTGTCTTGGAAGTATCTGTAATCTTCCTTTGTCTCAACTCAAGGAGCT 959
||||| |||||||| |||||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 900 TGTGCTCTACGTTTGCCTTGGAAGTATCTGCAATCTTCCTCTGTCTCAGCTCAAGGAGCT 959
Query 960 GGGACTAGGCCTAGAGGAATCCCAAAGACCTTTCATTTGGGTCATAAGAGGTTGGGAGAA 1019
||| ||||| || |||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 960 GGGGCTAGGGCTCGAGGAATCTCAAAGACCTTTCATCTGGGTCATAAGAGGTTGGGAAAA 1019
Query 1020 GTACAAAGAGTTAGTTGAGTGGTTCTCGGAAAGCGGCTTTGAAGATAGAATCCAAGATAG 1079
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 1020 GTACAAAGAGTTAGTTGAGTGGTTCTCGGAAAGCGGATTTGAAGATAGAATCAAAGACAG 1079
Query 1080 AGGACTTCTCATCAAAGGATGGTCCCCTCAAATGCTTATCCTTTCACATCCATCAGTTGG 1139
|||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 1080 AGGACTTCTCATCAAAGGATGGTCTCCTCAAATGCTTATCCTTTCACATCTTTCTGTTGG 1139
Query 1140 AGGGTTCCTAACACACTGTGGTTGGAACTCGACTCTTGAGGGGATAACTGCTGGTCTACC 1199
||||||| |||| || || || |||||||||||||||||||||||||| |||||||||||
Sbjct 1140 AGGGTTCTTAACGCATTGCGGATGGAACTCGACTCTTGAGGGGATAACCGCTGGTCTACC 1199
Query 1200 GCTACTTACATGGCCGCTATTCGCAGACCAATTCTGCAATGAGAAATTGGTCGTTGAGGT 1259
||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||
Sbjct 1200 GCTTCTTACATGGCCGCTATTTGCAGACCAATTCTGCAACGAGAAACTGGTCGTTCAGGT 1259
Query 1260 ACTAAAAGCCGGTGTAAGATCCGGGGTTGAACAGCCTATGAAATGGGGAGAAGAGGAGAA 1319
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 ACTAAAAGCCGGTGTAAGATCCGGGGTTGAGCAGCCTATGAAATGGGGAGAAGAGGAGAA 1319
Query 1320 AATAGGAGTGTTGGTGGATAAAGAAGGAGTGAAGAAGGCAGTGGAAGAATTAATGGGTGA 1379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 AATAGGAGTGTTGGTGGATAAAGAAGGAGTGAAGAACGCAGTGGAAGAATTAATGGGTGA 1379
Query 1380 GAGTGATGATGCAAAAGAGAGAAGAAGAAGAGCCAAAGAGCTTGGAGATTCAGCTCACAA 1439
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1380 GAGTGATGATGCAAAAGAGAGAAGAAGAAGAGCCAAAGAGCTTGGAGATTTAGCTCACAA 1439
Query 1440 GGCTGTGGAAGAAGGAGGCTCTTCTCATTCTAACATCTCTTTCTTGCTACAAGACATAAT 1499
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1440 GGCTGTGGAAGAAGGAGGCTCTTCTCATTCTAACATCTCATTCTTGCTACAAGACATAAT 1499
Query 1500 GGAACTGGCAGAACCCAATAATTGAGTATACGTCATCTTTTTAAAGGAATTTA 1552
| |||| ||| || ||||||||||||||||||||| ||||| |||||||||||
Sbjct 1500 GCAACTAGCACAATCCAATAATTGAGTATACGTCACCTTTTCAAAGGAATTTA 1552
> Ahg934312 jgi|Araly1|934312|scaffold_402300.1
Length=1535
Score = 1515 bits (820), Expect = 0.0
Identities = 1268/1480 (86%), Gaps = 47/1480 (3%)
Strand=Plus/Plus
Query 67 CTTCACTTTGTTCTCTTCCCTTTCATGGCTCAAGGCCACATGATTCCCATGGTTGATATT 126
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 CTTCACTTTGTTCTCTTCCCTTTCATGGCTCAAGGCCACATGATTCCCATGATTGATATT 119
Query 127 GCAAGGCTCTTGGCTCAGCGTGGTGTGATCATAACAATTGTCACGACGCCTCACAATGCA 186
||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||
Sbjct 120 TCAAGGCTTTTGGCTCAGCGCAGTGTGACCATAACAATTGTCACGACGCCTCACAACGCA 179
Query 187 GCGAGGTTCAAGAATGTCCTAAACCGTGCCATTGAGTCTGGCTTGCCCATCAA-CTTAGT 245
|| ||||| ||||||||||||| |||||| || ||||| |||||||||||||| || ||
Sbjct 180 GCAAGGTTTAAGAATGTCCTAAGCCGTGCAATAGAGTCGGGCTTGCCCATCAAACTG-GT 238
Query 246 GCAAGTCAAGTTTCCATATCTAGAAGCTGGTTTGCAAGAAGGACAAGAGAATATCGATTC 305
||| || ||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 239 GCATGTGAAGTTTCCATATCAAGAAGCTGGTTTGCAAGAAGGACAAGAGAATATAGATTC 298
Query 306 TCTT-GACACAATGGAGCGGATGATACCTTTCTTTAAAGCGGTTAACTTTCTCGAAGAAC 364
|| ||| ||| |||| |||| ||||||| ||||||||||| || | || ||||| |
Sbjct 299 G-TTAGACTCAAAGGAGTTGATGGTACCTTTTTTTAAAGCGGTGAAAATGCTTGAAGAGC 357
Query 365 CAGTC-CAGAAGCTCATTGAAGAGATGAACCCTCGACCAAGCTGTCTAATTTCTGATTTT 423
| ||| | ||||||||| ||||||||||| ||| ||| |||||||||||||||||||
Sbjct 358 CGGTCAC-GAAGCTCATGGAAGAGATGAAACCTAAACCTAGCTGTCTAATTTCTGATTGG 416
Query 424 TGTTTGCCTTATACAAGCAAAATCGCCAAGAAGTTCAATATCCCAAAGATCCTCTTCCAT 483
||||||||||||||||||| |||||||||||| |||||||| |||||||| | |||||
Sbjct 417 TGTTTGCCTTATACAAGCATAATCGCCAAGAAATTCAATATACCAAAGATAGTTTTCCAC 476
Query 484 GGCATGGGTTGCTTTTGTCTTCTGTGTATGCATGTTTTACGC-AAGAACCGT-GAGATCT 541
||||||||||| ||||||||| |||||||||||||| ||||| || |||| | ||||||
Sbjct 477 GGCATGGGTTGTTTTTGTCTTTTGTGTATGCATGTTCTACGCCAA-AACC-TAGAGATCC 534
Query 542 T-GGACAATTTAAAGTCAGATAAGGAGCT-TTTCACTG-TTCCT-GATTTTCCTGATAGA 597
| || ||| ||||||||||||| ||| | ||| |||| ||||| | ||||||||||| |
Sbjct 535 TAGGG-AATGTAAAGTCAGATAATGAG-TATTT-ACTGGTTCCTTG-TTTTCCTGATAAA 590
Query 598 GTTGAATTCACAAGAACG-CAAGTTCCGGTAGAAA-CATATGTTCCAGCTGGAGACTGGA 655
|||||||| |||| | | ||| |||| || |||| || ||| | || |||||| ||||
Sbjct 591 GTTGAATTTACAA-AGCCTCAACTTCCTGT-GAAAGCAAATG--CAAG-TGGAGATTGGA 645
Query 656 AAGATATCTTTGATGGTATGGTAGAAGC-GAATGAGACATCTTATGGTGTGATCGTCAAC 714
|||| ||| | || | |||||| |||| |||| | ||||| ||||||||| | ||||||
Sbjct 646 AAGAGATCATGGACGAAATGGTAAAAGCAGAAT-ACACATCATATGGTGTGGTAGTCAAC 704
Query 715 TCATTTC-AAGAGCTCGAGCCTGCTTATGCCAAAGACTACAAGGAGGTAAGGTCCGGTAA 773
|||| | ||||| | ||||||||||||| |||||||||||| |||| |||| | || ||
Sbjct 705 ACATT-CGAAGAGTTGGAGCCTGCTTATGTCAAAGACTACAAAGAGGCAAGGGCTGGAAA 763
Query 774 AGCATGGACCATTGGACCCGTTTCCTTGTGCAACAAGGTAGGAGCCGACAAAGCAGAGAG 833
|| |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 764 AGTATGGTCCATTGGACCAGTTTCCTTGTGCAACAAGGTAGGAGCAGACAAAGCAGAGAG 823
Query 834 GGGAAACAAATCAGAC-ATTGATCAAGATGAGTGCCTTAAATGGCTCGATTCTAA-GAA- 890
||| |||||| | | | ||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 824 GGGTAACAAAGCGG-CTATTGATCAAGATGAGTGTCTTAAATGGCTTGATTCTAAAGAAG 882
Query 891 ACATGGCTCGGTGCTTTACGTTTGTCTTGGAAGTATCTGTAATCTTCCTTTGTCTCAACT 950
| | || |||||||| || | ||| |||||||||||||| |||||||||||| |||| ||
Sbjct 883 A-A-GGTTCGGTGCTCTATGCTTGCCTTGGAAGTATCTGCAATCTTCCTTTGGCTCAGCT 940
Query 951 CAAGGAGCTGGGACTAGGCCTAGAGGAATCCCAAAGACCTTTCATTTGGGTCATAAGAGG 1010
||||||| |||| |||||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 941 CAAGGAGTTGGGGCTAGGCCTTGAGGAATCCCGAAGACCTTTTATTTGGGTCATAAGAGG 1000
Query 1011 TTGGGAGAAGTACAAAGAGTTAGT-TGAGTGGTTCTCGGAAAGCGGCTTTGAAGATAGAA 1069
|||||| |||||||| || || | ||||||| | | ||| ||||| ||| |||| ||||
Sbjct 1001 TTGGGAAAAGTACAATGAACTA-TCTGAGTGGATGTTGGAGAGCGGTTTTCAAGAAAGAA 1059
Query 1070 TCCAAGATAGAGGACTTCTCATCAAAGGATGGTCCCCTCAAATGCTTATCCTTTCACATC 1129
|| |||| |||||||||||||| | ||| ||| | || ||| | ||||||||||||||||
Sbjct 1060 TCAAAGAGAGAGGACTTCTCATTAGAGGGTGGGCACCACAAGTCCTTATCCTTTCACATC 1119
Query 1130 CATCAGTTGGAGGGTTCCTAACACACTGTGGTTGGAACTCGACTCTTGAGGGGATAAC-T 1188
| || |||||||| ||| | ||||||||||| ||||| |||||||| || || || || |
Sbjct 1120 CTTCCGTTGGAGGATTCTTGACACACTGTGGATGGAATTCGACTCTCGAAGGAATCACCT 1179
Query 1189 GCTGGTC-TACCGCTACTTACATGGCCGCTATTCGCAGACCAATTCTGCAATGAGAAATT 1247
| || | | || || || ||||||||||| || |||||||||||||| || |||||| |
Sbjct 1180 -CGGG-CATTCCACTTCTCACATGGCCGCTGTTTGCAGACCAATTCTGTAACGAGAAACT 1237
Query 1248 GGTCGTTG-AGGTACTAAAAGCCGGTGTAAGATCCGGGGTTGAACAGCCTATGAAATGGG 1306
||||| | |||||||||||||||||| |||| |||| ||||| ||||||||||||| ||
Sbjct 1238 AGTCGT-GCAGGTACTAAAAGCCGGTGCAAGAGCCGGAGTTGAGCAGCCTATGAAATCGG 1296
Query 1307 GAGAAGAGGAGAAAATAGGAGTGTTGGTGGATAAAGAAGGAGTGAAGAAGGCAGTGGAAG 1366
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1297 GAGAAGAGGAGAAAATAGGAGTGTTAGTGGATAAAGAAGGAGTGAAGAAAGCAGTGGAAG 1356
Query 1367 AATTAATGGGTGAGAGTGATGATGCAAAAGAGAGAAGAAGAAGAGCCAAAGAGCTTGGAG 1426
||||||||||| | |||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1357 AATTAATGGGTAATAGTGATGATGCAAAAGAGAGGAGAAGAAGAGTCAAAGAGCTTGGAG 1416
Query 1427 A-TTCAGCTCACAAGGCTGTGGAAGAAGGAGGCTCTTCTCATTCTAACATCTCTTTCTTG 1485
| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1417 AATT-AGCTCACAAGGCTGTGGAAGAAGGAGGCTCTTCTCATTCTAACATCTCATTCTTG 1475
Query 1486 CTACAAGACATAATGGAACTGGCAGAAC-CCAATAATTGA 1524
|||||||||||| || |||| | | || |||| ||||||
Sbjct 1476 CTACAAGACATAGTGCAACTAGT-GCACTCCAAGAATTGA 1514
> Ahg482658 jgi|Araly1|482658|fgenesh2_kg.4__1718__AT2G36750.1
Length=1529
Score = 1118 bits (605), Expect = 0.0
Identities = 1206/1491 (81%), Gaps = 62/1491 (4%)
Strand=Plus/Plus
Query 62 CTCCACTTCACTTTGTTCTCTTCCCTTTCATGGCTCAAGGCCACATGATTCCCATGGTTG 121
|||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 32 CTCCTCTTCACTTTGTTCTCTTCCCTTTCATGGCTCAAGGTCACATGATCCCCATGGTGG 91
Query 122 ATATTGCAAGGCTCTTGGCTCAGCGTGGTGTGATC-ATAACAATTGTCACGACGCCTCAC 180
||||||||||||||||||||||||| || |||| | ||||| ||||||||||||||||||
Sbjct 92 ATATTGCAAGGCTCTTGGCTCAGCGCGGGGTGA-CTATAACCATTGTCACGACGCCTCAC 150
Query 181 AATGCA-GCGAGGTTCAAGAATGTCCTAAACCGTGCCATTGAGTCTGGCTTGCCCATCAA 239
|| ||| || |||||||||| || | | ||| ||||| |||| ||||||||||||||
Sbjct 151 AACGCAGGC-CGGTTCAAGAACGTTTTTAGCCGGGCCATCCAGTCCGGCTTGCCCATCAA 209
Query 240 -CTTAGTGCAAGTCAAGTTTCCATATCTAGAAGCTGGTTTGCAAGAAGGACAAGAGAATA 298
||| |||||||| |||||||||| || |||| | |||| | |||||||| ||||||
Sbjct 210 TCTT-GTGCAAGTAAAGTTTCCATCTCAAGAATCGGGTTCACCCGAAGGACAGGAGAATT 268
Query 299 TCGA-TTCTCTTGACACAAT-GGAGCG-GATGATACCTTTCTTTAAAGCGGT-TAACTTT 354
| || || || || | | || ||| || | ||| ||||| ||||| | || | |
Sbjct 269 TGGACTT-GCTGGATTCGTTGGGGGCGTCATTA-ACC-TTCTTCAAAGC-ATCTAGCCTG 324
Query 355 CTCGAAGAACCAGTCCAGAAGCTCATTG-AAGAGA-TGAACCCTCGACCAAGCTGTC-TA 411
|| || ||||| ||| |||||||| ||| |||||| | || ||| | |||||||| | ||
Sbjct 325 CTTGAGGAACCGGTCGAGAAGCTC-TTGAAAGAGATTCAA-CCTAGGCCAAGCTG-CATA 381
Query 412 ATTTCTGATTTTTGTTTGCCTTATACAAGCAAAATCGCCAAGAAGT-TCAATATCCCAAA 470
|| | || | |||||||||||||||| | ||| |||||||| | | ||| |||||
Sbjct 382 ATCGCCGACATGTGTTTGCCTTATACAAACCGAATTGCCAAGAA-TCTTGGTATACCAAA 440
Query 471 GATCCTCTTCCATGGCATGGGTTGCTTTTGTCTTCTGTGTATGCATGTT-T-TACGCAAG 528
||| |||| ||||||||| ||||||| |||||| |||| ||| || | || |||
Sbjct 441 AATCATCTTTCATGGCATGTGTTGCTTCAATCTTCTTTGTACGCACATTATGCAC-CAA- 498
Query 529 AACCGTGAGATCTTGGACAA-TTTAAAGTCAGATAAGGAGCT-TTTCACTGTTCCTGATT 586
||| ||| | ||||| || | || |||| || |||||| | ||| | |||| |||
Sbjct 499 AACTACGAGTTATTGGA-AACTATAGAGTCTGAAAAGGAG-TACTTCTCCATTCCAAATT 556
Query 587 TTCCTGATAGAGTTGAATTCACAAGAA-CGCAAG-TTCCGGTAGAAACATATGTTCCAGC 644
| ||||| ||||||| ||||||| || | | || |||| | | || ||| ||
Sbjct 557 TCCCTGACCGAGTTGAGTTCACAA-AATCTC-AGCTTCCAAT-G-GTTTTA-GTT---GC 608
Query 645 TGGAGACTGGAAAGA-TATCTTTGATGGTATGGTAGAAGCGAATGAGACATCTTATGGTG 703
|||||| |||||||| | || |||| | ||| ||||||| || | || |||| |||||
Sbjct 609 TGGAGATTGGAAAGAGTTTC-TTGACGAAATGACAGAAGCGGATAACACTTCTTTTGGTG 667
Query 704 TGATCGTCAACTCATTTCAAGAGCTCGAGCCTGCTTATGCCAAAGACTACAAGGAGG-TA 762
|||| || ||| | ||| ||||||||||||| ||||||| | |||||||||| ||| ||
Sbjct 668 TGATTGTTAACACGTTTGAAGAGCTCGAGCCAGCTTATGTTAGAGACTACAAGAAGGTTA 727
Query 763 AGGTCCGGTAAAGCATGGACCATTGGACCCGTTTCCTTGTGCAACAAGGTAGGAGCCGAC 822
| | ||||||| | ||||| ||| || || ||||||||||||||||||||||||| |||
Sbjct 728 AAG-CCGGTAAGGTATGGAGCATCGGGCCGGTTTCCTTGTGCAACAAGGTAGGAGAAGAC 786
Query 823 AAAGCAGAGAGGGGAAACAAATCAGACATTGATCAAGATGAGTGCCTTAAATGGCTCGAT 882
||||| |||||||||||||| | | |||||||||||| ||||| |||||||||| |||
Sbjct 787 AAAGCTGAGAGGGGAAACAAGGCGGCCATTGATCAAGACGAGTGTATTAAATGGCTTGAT 846
Query 883 TCT-AAGAAACATGGCTCGGTGCTTTACGTTTGTCTTGGAAGTATCTGTAATCTTCCTTT 941
||| ||||| | || || || || || ||||| ||||||||||| || ||||||||| |
Sbjct 847 TCTAAAGAAGTA-GGGTCAGTTCTATATGTTTGCCTTGGAAGTATATGCAATCTTCCTCT 905
Query 942 GTCTCAACTCAAGGAGCT-GGGACTAGGCCTAGAGGAATCCCAAAGACCTTTCATTTGGG 1000
|||||| ||||| ||||| ||| ||||||| |||||||||||||| |||||||||||||
Sbjct 906 GTCTCAGCTCAAAGAGCTCGGG-TTAGGCCTCGAGGAATCCCAAAGGCCTTTCATTTGGG 964
Query 1001 TCATAAGAGGTTGGGAGAAGTACAAAGAGTTAGTTGAGTGGTTCTCGGAAAGCGGCTTTG 1060
|||||||||||||||||||||| || |||||| |||||||| |||| || ||||| |||
Sbjct 965 TCATAAGAGGTTGGGAGAAGTATAACGAGTTATTTGAGTGGATCTCAGAGAGCGGTTTT- 1023
Query 1061 AAG-ATAGAATCCAAGATAGAGGACTTCTCATCAA-AGGATGGTCCCCTCAAATGCTTAT 1118
||| | |||||| |||| ||||| |||||||| || ||||||||| ||||||||||||||
Sbjct 1024 AAGGAAAGAATCAAAGAGAGAGGCCTTCTCAT-AAGAGGATGGTCGCCTCAAATGCTTAT 1082
Query 1119 CCTTTCACATCCAT-CAGTTGGAGGGTTCCTAACACACTGTGGTTGGAACTCGACTCTTG 1177
||||||||| || | | |||||||| ||| | ||||| ||||| ||||||||||||||||
Sbjct 1083 CCTTTCACACCC-TGCCGTTGGAGGATTCTTGACACATTGTGGATGGAACTCGACTCTTG 1141
Query 1178 AGGGGATAACTGCTGGTC-TACCGCTACTTACATGGCCGCTATTCGCAGACCAATTCTGC 1236
| || || ||| | || | | || | || || ||||| |||| | |||||||||||||
Sbjct 1142 AAGGAATCACTTCAGG-CGTTCCATTGCTCACTTGGCCATTATTTGGAGACCAATTCTGC 1200
Query 1237 AATGAGAAATTGGTCGTTG-AGGTACTAAAAGCCGGTGTAAGATCCGGGGTTGAACAG-C 1294
||||||||||||| || || || |||||||||||||||| ||| |||||||||| || |
Sbjct 1201 AATGAGAAATTGG-CGGTGCAGATACTAAAAGCCGGTGTGAGAGCCGGGGTTGAGGAGTC 1259
Query 1295 CTATGAAATGGGGAGAAGAGGAGAAAATAGGAGTGTTGGTGGATAAAGAAGGAGTGAAGA 1354
| |||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||
Sbjct 1260 C-ATGAGATGGGGAGAAGAGGAGAACGTAGGAGTATTGGTGGATAAAGAAGGAGTAAAGA 1318
Query 1355 AGGCAGTGGAAGAATTAATGGGTGAGAGTGATGATGCAAAAGAGAGAAGAAGAAGAGCCA 1414
|||||||||||||||| |||||||| ||| ||||||| || |||||||||| ||||| ||
Sbjct 1319 AGGCAGTGGAAGAATTGATGGGTGATAGTAATGATGCTAAGGAGAGAAGAAAAAGAGTCA 1378
Query 1415 AAGAGCTTGGAGA-TTCAGCTCACAAGGCTGTGGAAGAAGGAGGCTCTTCTCATTCTAAC 1473
||||||||||||| || |||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1379 AAGAGCTTGGAGAATT-AGCTCACAAGGCTGTGGAGGAAGGAGGCTCTTCTCATTCCAAC 1437
Query 1474 ATCTCTTTCTTGCTACAAGACATAATGGAACTGGCAGAACCCAATAATTGA 1524
||| | || |||||||||||||||| |||| |||||| |||| || |||
Sbjct 1438 ATCACATTATTGCTACAAGACATAACACAACTAGCAGAATCCAAGAAATGA 1488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61363384695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5