BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36830.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482663 jgi|Araly1|482663|fgenesh2_kg.4__1723__AT2G36830.1 1622 0.0
Ahg484417 jgi|Araly1|484417|fgenesh2_kg.5__409__AT3G26520.1 643 0.0
> Ahg482663 jgi|Araly1|482663|fgenesh2_kg.4__1723__AT2G36830.1
Length=1022
Score = 1622 bits (878), Expect = 0.0
Identities = 985/1035 (95%), Gaps = 13/1035 (1%)
Strand=Plus/Plus
Query 1 AAAAATCATCAAATCCATCTCCCACTCTTCTAGCATCTTGAAGCTTAAATCTCAGCCGTC 60
||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct 1 AAAAATCATCAAATCCATCTCTCACTCTTCTAGCATCTTGACGATTAAATCTCAGCCGTC 60
Query 61 CGATCATGCCGATCAGAAACATCGCCATTGGCCGTCCAGATGAAGCCACCCGTCCCGATG 120
|||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |
Sbjct 61 CGATCATGCCGATCAGAAACATCGCCGTTGGCCGTCCTGATGAAGCAACCCGTCCCGACG 120
Query 121 CCTTAAAGGCGGCGTTGGCTGAGTTCATTTCAACTTTGATCTTTGTCGTCGCCGGTTCAG 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 CCTTAAAGGCGGCGTTGGCTGAGTTCATTTCAACTTTGATCTTCGTCGTCGCCGGTTCAG 180
Query 181 GCTCTGGCATGGCTTTCAACAAGCTCACTGAAAACGGAGCCACCACTCCTTCTGGTCTCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCTGGCATGGCTTTCAACAAGCTCACTGAAAACGGAGCCACCACTCCTTCTGGTCTCG 240
Query 241 TAGCTGCTGCAGTGGCTCATGCCTTTGGACTCTTCGTCGCTGTCTCAGTTGGTGCCAACA 300
||||||| ||| |||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 241 TAGCTGCCGCACTGGCTCATGCTTTTGGACTCTTCGTCGCTGTCTCCGTTGGTGCTAACA 300
Query 301 TCTCTGGTGGACACGTTAACCCTGCCGTCACTTTCGGTGCTTTCATTGGTGGTAACATCA 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTCCGGTGGACACGTTAACCCTGCCGTCACTTTCGGTGCTTTCATTGGTGGTAACATCA 360
Query 361 CTCTCCTCCGTGGTATCCTCTACTGGATTGCTCAGCTTCTCGGCTCCGTCGTCGCTTGCC 420
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 361 CTCTCCTCCGTGGTATCCTCTACTGGATTGCTCAGCTTCTTGGCTCCGTCGTCGCTTGTC 420
Query 421 TCATCCTTAAATTCGCCACCGGTGGCTTGGCTGTGCCGGCTTTTGGTCTCTCTGCTGGAG 480
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 421 TCATCCTCAAATTCGCCACCGGTGGCTTGGCGGTGCCGGCTTTTGGTCTCTCTGCTGGGG 480
Query 481 TAGGAGTGTTGAACGCTTTCGTTTTCGAGATCGTGATGACATTCGGGCTTGTTTACACCG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 TAGGAGTGTTGAACGCTTTCGTTTTCGAGATCGTGATGACATTCGGGCTTGTGTACACCG 540
Query 541 TCTACGCTACAGCCATTGACCCCAAAAACGGGAGTCTTGGAACAATTGCTCCCATCGCAA 600
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTACGCCACCGCCATTGACCCCAAAAACGGGAGTCTTGGAACAATTGCTCCCATCGCAA 600
Query 601 TCGGTTTCATTGTTGGAGCCAACATCTTAGCTGGAGGAGCTTTCTCTGGAGCCTCCATGA 660
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 601 TCGGTTTCATAGTTGGAGCCAACATCTTAGCCGGAGGAGCTTTCTCCGGAGCCTCCATGA 660
Query 661 ATCCCGCCGTGGCTTTCGGACCAGCGGTGGTGAGCTGGACATGGACCAACCACTGGGTCT 720
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 ATCCCGCCGTGGCTTTTGGACCAGCGGTGGTGAGCTGGACGTGGACCAACCACTGGGTCT 720
Query 721 ACTGGGCCGGACCTCTCGTCGGCGGTGGAATCGCTGGACTCATCTACGAAGTTTTCTTCA 780
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACTGGGCCGGTCCTCTCGTCGGCGGTGGAATCGCTGGACTCATCTACGAAGTTTTCTTCA 780
Query 781 TCAACACCACACACGAGCAGCTCCCAACCACAGACTACTGAATTAAtctctctttttctc 840
|||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 781 TCAACACCACCCACGAACAGCTCCCAACCACCGATTACTGAATTAATCTCTCTTTTTCTC 840
Query 841 tcttgtgtaattttattcgactttgaatttgaattttaatgtctttttaatttCCGTTTG 900
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 841 TCTTGTGTAATTTTATTCGTCTTTGAATTTGAATTTCAATGTCTTTTTAATTTCCGTTTG 900
Query 901 TGTAATTTCGAATCATCAAGGGGTTTATGATCGTTCGATCTTTTAGATGAATCCTTGTCC 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 901 TGTAATTTCGAATCATCAAGGGGTTTATGATCGTTGGATCTTTTAGATGAATCCTCGTCC 960
Query 961 GTTGGTTTCAAGAGTGGCCATTGCAATTTCGACTATATAATGTGAATTATGTATCAATCT 1020
||||||||||||||||| | || ||| | || || |||||||||||||| ||||
Sbjct 961 GTTGGTTTCAAGAGTGG---T--CA-TTT--A-TA-AT---GTGAATTATGTATCTATCT 1007
Query 1021 CATCTTAAGTTTTCA 1035
|||||||||||||||
Sbjct 1008 CATCTTAAGTTTTCA 1022
> Ahg484417 jgi|Araly1|484417|fgenesh2_kg.5__409__AT3G26520.1
Length=1162
Score = 643 bits (348), Expect = 0.0
Identities = 641/781 (82%), Gaps = 26/781 (3%)
Strand=Plus/Plus
Query 58 GTCCGATCATGCCGATCAGAAACATCGCCATT-G-GCCGTCC-AGATGAAG-CCACCCGT 113
||||||||||||||| | |||||||||||||| | | |||| ||| || | | | |
Sbjct 89 GTCCGATCATGCCGACCCGAAACATCGCCATTGGTGGAGTCCAAGAAGAGGTCTA-TCAC 147
Query 114 CCCGATGC-CTTAAAGGCGGCGTTGGCTGAGTTCATTTCAACTTTGATCTTTGTCGTCGC 172
||| | || ||| | ||||||| | |||||||| || || ||||||||||| ||| | ||
Sbjct 148 CCCAACGCACTT-AGGGCGGCGCTCGCTGAGTTTATCTCGACTTTGATCTTCGTCTTTGC 206
Query 173 CGGTTCAGGCTCTGGCATGGCTTTCAACAAGCTCACTGAAAACGGAGCCACCACTCCTTC 232
||| |||||||| || || |||||||||||||| ||||| || |||||||||||||||||
Sbjct 207 CGGATCAGGCTCCGGAATTGCTTTCAACAAGCTGACTGACAATGGAGCCACCACTCCTTC 266
Query 233 TGGTCTCGTAGCTGCTGCAGTGGCTCATGCCTTT-GGACTCTTCGTCGCTGTCT-CAGTT 290
|| ||||| || ||||| | ||||||| |||| || ||||| |||||||| | | ||
Sbjct 267 CGGCCTCGTCGCCGCTGCCTTAGCTCATG-CTTTCGGTCTCTTTGTCGCTGT-TGCTGTC 324
Query 291 GGTGCCAACATCTCTGGTGGACACGTTAACCCTGCCGTCACTTTCGGTG-CTTTCATTGG 349
|| || ||||| || ||||| ||||||||||||||||| || ||||||| ||| | | ||
Sbjct 325 GGCGCTAACATTTCCGGTGGCCACGTTAACCCTGCCGTTACCTTCGGTGTCTTAC-TCGG 383
Query 350 TGGTAACATCACTCTCCTCCGTGGTATCCTCTACTGGATTGCTCAGCTTCTCGGCTCCGT 409
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 384 TGGTAACATCACTCTCCTCCGTGGTATTCTCTACTGGATTGCTCAGCTTCTTGGCTCCGT 443
Query 410 CGTCGCTTGCCTCATCCTTAAATTCGCCACCGGTGGCTTGGCTGTGCCGGCTTTTGGTCT 469
|| |||||| || |||||| || |||||||||||| | | | || || || |||||
Sbjct 444 CGCCGCTTGTTTCCTCCTTAGCTTTGCCACCGGTGGCGAGCCAATTCCAGCGTTCGGTCT 503
Query 470 CTCTGCTGGAGTAGGAGTG-TTGAACGCTTTCGTTTTCGAGATCGTGATGACATTCGGGC 528
|||||| ||||||||| | ||||||||| |||| ||||| ||||||||||| |||||||
Sbjct 504 CTCTGCCGGAGTAGGA-TCATTGAACGCTCTCGTCTTCGAAATCGTGATGACCTTCGGGC 562
Query 529 TTGTTTACACCGTCTACGCTACAGCCATTGACCCCAAAAACGGG-AGTCTTGGAACAATT 587
| || |||||||||||||| |||||| |||||||||| || ||| ||||| ||||||||
Sbjct 563 TCGTCTACACCGTCTACGCCACAGCCGTTGACCCCAAGAA-GGGTAGTCTCGGAACAATC 621
Query 588 GCTCCCATCGCAATCGGTTTCATTGTTGGAGCCAACATCTTAGCTGGAGGAGCTTTCT-C 646
|| || ||||| || ||||||||||||||||| |||||| | || || ||||||||| |
Sbjct 622 GCACCAATCGCCATAGGTTTCATTGTTGGAGCTAACATCCTCGCCGGTGGAGCTTTCAGC 681
Query 647 TGGAGCCTCCATGAATCCC-GCCGTGGCTTTCGGACCAGCGGTGGTGAGCTGGACATGGA 705
|||||||||||||| ||| ||||| |||||||||||||| || || |||||||||||||
Sbjct 682 -GGAGCCTCCATGAA-CCCAGCCGTTGCTTTCGGACCAGCCGTCGTAAGCTGGACATGGA 739
Query 706 CCAACCACTGGGTCTACTGGGCCGGACCTCTCGTCGGCGGTGGAATCGCTGGACTCATCT 765
||||||||||||| |||||||| || ||||| || || |||||| |||| ||| | ||||
Sbjct 740 CCAACCACTGGGTTTACTGGGCTGGTCCTCTTGTTGGTGGTGGACTCGCCGGAATTATCT 799
Query 766 ACGAAGTTT-TCTTCATCAAC-ACCA--CACACGAGCAGCTCCCAACCACAGACTACTGA 821
|||| ||| |||||||| | | | | |||||||| | |||||||| || ||||||
Sbjct 800 ACGAT-TTTGTCTTCATCGATGAAAATGCCCACGAGCAATTGCCAACCACCGATTACTGA 858
Query 822 A 822
|
Sbjct 859 A 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5