BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36870.1 Length=1175 Score E Sequences producing significant alignments: (Bits) Value Ahg482667 jgi|Araly1|482667|fgenesh2_kg.4__1727__AT2G36870.1 1773 0.0 > Ahg482667 jgi|Araly1|482667|fgenesh2_kg.4__1727__AT2G36870.1 Length=1093 Score = 1773 bits (960), Expect = 0.0 Identities = 1051/1095 (96%), Gaps = 5/1095 (0%) Strand=Plus/Plus Query 5 TCCACTCTTCTTCTTTCCACTCCACACAAAAGAAGAA-AAAGAGAGAAATGGGTAACTCT 63 ||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||| Sbjct 1 TCCACTCTTCTTCTTTCCACTCCACACAAAAGAAGAAGAAAGA-A-AAATGGGCAACTCT 58 Query 64 TTGATCTCTCTTCTCTCAATCTTCCACTTGCTGGTGTTATGGGGATCCTCAGTGAATGCC 123 |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 59 TTGATCTCTCTTTTCTCAATCTTCCACTTGTTGGTGTTATGGGGATCCTCAGTGAATGCT 118 Query 124 TATTGGCCACCATCACCTGGTTATTGGCCAAGCTCCAAGGTTGGTTCCCTCAACTTCTAC 183 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| Sbjct 119 TATTGGCCACCATCACCTGGTTATTGGCCAAGCTCCAAGGTTAGCTCCCTCAACTTTTAC 178 Query 184 AAAGGTTTTAGGAATCTTTGGGGTCCTCAGCATCAGAGAATGGACCAAAATGCCCTCACC 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AAAGGTTTTAGGAATCTTTGGGGTCCTCAGCATCAGAGAATGGACCAAAATGCCCTCACC 238 Query 244 ATCTGGCTTGATAGAACCTCAGGAAGTGGATTCAAGTCAGTGAAGCCATTCAGATCAGGC 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 ATCTGGCTTGATAGAACCTCAGGAAGTGGATTCAAGTCAGTGAAGCCATTCAGATCAGGC 298 Query 304 TACTTTGGAGCAAACATCAAACTCCAACCTGGCTACACTGCTGGAGTCATCACATCTCTC 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TACTTTGGAGCAAACATCAAACTCCAACCTGGCTACACTGCTGGAGTCATCACATCTCTC 358 Query 364 TATCTATCAAATAATGAGGCACATCCAGGGTTCCATGATGAGGTAGACATAGAATTTTTG 423 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| || Sbjct 359 TATCTATCAAATAATGAGGCACATCCAGGGTTCCATGATGAAGTGGACATAGAATTTCTG 418 Query 424 GGGACAACATTTGGGAAGCCTTACACACTTCAGACAAATGTGTATATTAGAGGAAGTGGT 483 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 419 GGGACAACATTTGGGAAGCCTTACACACTTCAGACAAATGTGTACATTAGAGGAAGTGGT 478 Query 484 GATGGGAAAATCATTGGCCGTGAGATGAAGTTTCGCTTGTGGTTTGATCCAACTAAAGAT 543 ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 479 GATGGCAAAATCATTGGTCGTGAGATGAAGTTTCGTTTGTGGTTTGATCCAACTAAAGAT 538 Query 544 TTTCACCATTATGCTATTCTTTGGAGCCCTAGAGAAATCATATTTTTGGTGGATGATATT 603 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTCCACCATTATGCTATTCTTTGGAGCCCTAGAGAAATCATATTTTTGGTGGATGATATT 598 Query 604 CCCATAAGAAGATACCCAAAGAAGAGTGCGTCTACATTTCCTTTAAGACCAATGTGGCTT 663 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 599 CCCATAAGAAGATACCCAAAGAAGAGTGCGGCTACATTTCCTTTAAGACCAATGTGGCTT 658 Query 664 TATGGTTCCATATGGGATGCTTCTTCTTGGGCAACGGAAGACGGTAAATACAAAGCCGAC 723 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 659 TATGGTTCCATATGGGATGCTTCTTCTTGGGCAACCGAAGATGGTAAATACAAAGCCGAC 718 Query 724 TATAAATATCAACCTTTCACTGCTAAATACACCAATTTTAAAGCGCTCGGCTGCACCGCC 783 ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| Sbjct 719 TATAAATATCAACCTTTTACTGCAAAATACACCAATTTTAAAGCCCTCGGCTGCACCGCC 778 Query 784 TACTCGTCAGCTCGGTGCTATCCGTTGTCGGCTTCGCCATACCGTTCTGGCGGATTAACC 843 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 779 TACTCGTCGGCTCGGTGCTATCCATTGTCGGCTTCGCCATACCGTTCTGGCGGATTAACC 838 Query 844 CGACAACAACACCAAGCCATGAGATGGGTTCAAACACATAGTATGGTATACAATTATTGC 903 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CGGCAACAACAGCAAGCCATGAGATGGGTTCAAACACATAGTATGGTATACAATTATTGC 898 Query 904 AAAGATTATAAGCGAGACCATTCTTTAACGCCGGAATGTTGGCGTTAGGAAATATTCGAT 963 |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || Sbjct 899 AAAGATTATAAGCGAGACCATTCTCTAACGCCGGAATGTTGGCGTTAGGAAACATTTGAG 958 Query 964 GAAAGTCCCAAAGTTTGAGAGTTTTAATCACATCAAAGTTAATACCAGAAAGAGCTTGGT 1023 |||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||| Sbjct 959 GAAAGTCCCAAAGTTTGAGAATTTTAATTACATCAAAGACAATACCACAAAGAGCTTGGT 1018 Query 1024 ACAATTTTGGGAtttttt-t-CATTACTATTATTATGTGGTTGGTTGTTTCACGAAAATA 1081 | |||||||||||||||| | |||||||||||||| ||||||| |||||||||| ||||| Sbjct 1019 AAAATTTTGGGATTTTTTGTTCATTACTATTATTACGTGGTTGTTTGTTTCACGGAAATA 1078 Query 1082 AATTTTCtttttttt 1096 ||||||| ||||||| Sbjct 1079 AATTTTCCTTTTTTT 1093 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43841354550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5