BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36950.1 Length=1421 Score E Sequences producing significant alignments: (Bits) Value Ahg482676 jgi|Araly1|482676|fgenesh2_kg.4__1736__AT2G36950.1 1871 0.0 > Ahg482676 jgi|Araly1|482676|fgenesh2_kg.4__1736__AT2G36950.1 Length=1433 Score = 1871 bits (1013), Expect = 0.0 Identities = 1316/1454 (91%), Gaps = 54/1454 (4%) Strand=Plus/Plus Query 1 TTACTCTCGTTCAAACAATTCTTCGTCCTATTAAATACaaaaaat-aaaaat-----cct 54 ||||||||||||||||| |||||| |||| ||||||||||||||| |||||| || Sbjct 1 TTACTCTCGTTCAAACATTTCTTCATCCT-TTAAATACAAAAAATAAAAAATAAAAACC- 58 Query 55 ta-aaaaTATATCCTTATCTTCAACCAAGAATGGGAGAGGTCCAAGAAGGTCCCAAAGTT 113 || |||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 59 TAGAAAATA-A-CCTTATCTTCAACCAAGAATGGGAGAGGTCCAAGAAGGTGCCAAAGTT 116 Query 114 GAACAAGAGAAGAAGCCGGCTGCCACCGTAGTCCCAGTTGAGACTACTGACGGCAAGCCA 173 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 117 GAACAAGAGAAGAAGCCGGCTGCCACCGTAGTCCCAGTCGAGACTACGGACGGCAAGCCA 176 Query 174 AAGAGCGGCGGAGGAGATTCCGCGGCAGCAGCAGCACCACCGGTCGCCGCGGTTGTCTCT 233 |||||||||||||||||||||||||||||||||| || || | ||||| | || Sbjct 177 AAGAGCGGCGGAGGAGATTCCGCGGCAGCAGCAG--CC-CC-G--GCCGC------CGCT 224 Query 234 GCCTTTGTTTACAAAGTGGATATGCACTGTGAAGGCTGCGCTAAGAAGATAAAGCGAATG 293 ||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||| Sbjct 225 GCCTTTGTTTACAAAGTTGATCTGCACTGCGAAGGCTGCGCTAAGAAGATTAAGCGAATG 284 Query 294 GTTAAGCACTTTGATGGAGTGAAAGATGTGACGGCAGATACTGGTGGAAATAAGCTTTTG 353 || |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| || Sbjct 285 GTGAAGCACTTTGATGGAGTGAAAGATGTGACGGCGGATACAGGTGGTAATAAGCTTATG 344 Query 354 GTGGTCGGAAAGATTGATCCAGTGAAACTCCAGGAGAAGTTGGAGGAGAAAACCAAGAGA 413 |||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||| Sbjct 345 GTGGTCGGAAAGATTGATCCGGTGCAACTCCAGGAGAAGTTAGAGGAGAAAACTAAGAGA 404 Query 414 AAGGTGGT--T---C--T----CGCGA-ATCCACCGCCAAAGGTAGAGGGACCTGTTGCT 461 |||||||| | | | ||| | | ||||||||||||||||||||||||||||| Sbjct 405 AAGGTGGTACTCACCAATCCACCGCCACCTTCACCGCCAAAGGTAGAGGGACCTGTTGCT 464 Query 462 GCCGCCGTTGGAGAGAAGAAAGCCGATGGTGGAGATAAGGAGGCGGCTCCTCCTGCTCCT 521 ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| || || Sbjct 465 GCCGCCGTTGGAGAGAAGAAAGCCGATGGAGGAGATAAGGCGGCGGTTCCTCCTCCTGCT 524 Query 522 GCTCCGGCAGCTCCAAAAGAGAGCGT-GGTGCCTTTAAAGATCAGACTACATTGCGAAGG 580 |||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| Sbjct 525 GCTCCGGCAGCTCCAAAAGAGAGC-TCCGTGCCTTTAAAGATCAGACTACATTGTGAAGG 583 Query 581 ATGTATTCAGAAAATCAAGAAAATAATATTGAAAATCAAAGGAGTCGAAACAGTGGCTAT 640 |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct 584 ATGTATTCAGAAAATCAAGAAAATAATATTAAAAATCAAAGGGGTCGAAACCGTGGCTAT 643 Query 641 TGACGGAGCTAAAGACGTGGTGACGGTTAAAGGAACGATAGACGTTAAAGAACTTGTGCC 700 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 644 TGACGGAGCTAAAGACGTGGTGACGGTGAAAGGAACGATAGACGTTAAAGAACTTGTGCC 703 Query 701 TCTACTCACTAAGAAGCTCAAAAGAACCGTCGAGCCTCTTGTTCCCGCCAAAAAAGATGA 760 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 704 TCTCCTCACTAAGAAGCTCAAAAGAACCGTCGAGCCTCTTGTTCCCGCCAAAAAAGATGA 763 Query 761 CGGAGCCGCCGAGAATAAGAAGACGGAAGCTGCCGCTCCTGACGCAAAGAAAGAGGCTCC 820 ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 764 CGGAGCCGCCGAGAAGAAGAAGACGGAAGCCACCGCTCCTGACGCAAAGAAAGAGGCTCC 823 Query 821 GTCCGCCGGAGTTAACGAAGCaaagaaggaaggaagtgacggtggagagaagaaaaaaga 880 | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 824 GACCGCCGGAGTTAACGAAGCAAAGAAGGAAGGAAATGACGGTGGAGAGAAGAAGAAAGA 883 Query 881 ggttggagacggcggagagaagaagaaagaaggtggtgacggcggagagaaa-aagaaag 939 || ||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||||| Sbjct 884 GGCCGGAGACGGCGGAGAGAAAAAGAAAGAAGCTGGTGACGGCGGAGA-AAAGAAGAAAG 942 Query 940 aagccggagacggaggagagaagaagaaagaTGGCGGAGG------TGTGCCGGCCCCGG 993 |||| ||||||||||||||||||||| ||| ||||||||| ||||||||| |||| Sbjct 943 AAGCTGGAGACGGAGGAGAGAAGAAGGAAGGTGGCGGAGGAGGAGGTGTGCCGGCGCCGG 1002 Query 994 TGGCGATGGTGAATAAGATGGATTATTATGGGTACTCAGCTTATCCAACGGCTCCTATGC 1053 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 1003 TGGCGATGGTGAATAAGATGGATTATTATGGGTACTCATCTTATCCAACGGCTCCGATGT 1062 Query 1054 ATTGGCAAGAAGGACACGTGTACGGTCAGAGTTATTCGATGACAGGTCAGAATTATCCAG 1113 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | Sbjct 1063 ATTGGCAAGAAGGACACGTGTACGGTCAGAGTTATTCGATGGGAGGTCAGAGTTATCCCG 1122 Query 1114 TGGGAGGTCAGAGTTATCCAGGTTCAGGATACAACTACGCAAGTGAGAGTTACGTGCCGT 1173 ||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| | Sbjct 1123 TGGCAGGTCAGAGTTATCCAGGTTCAGGATACAACTACGCGACTGAGAGTTACGTGCCCT 1182 Query 1174 ACGCGCAGCCAAACGTGAACGCTCCTGGAATGTTCAGCGACGAGAATCCCAATGGTTGCT 1233 || ||||||||||||||||||||||||||||||||||||||||||| |||||||| || | Sbjct 1183 ACTCGCAGCCAAACGTGAACGCTCCTGGAATGTTCAGCGACGAGAACCCCAATGGCTGTT 1242 Query 1234 CTGTTATGTAATAATGGGGTTAAACTGTAAATATAAGAAACTATAAGGGTTTAAAACATA 1293 | |||||||||||||||||||||| || |||||||||||||| |||||||||| |||| Sbjct 1243 CCGTTATGTAATAATGGGGTTAAATTGAAAATATAAGAAACTCTAAGGGTTTATG-CATA 1301 Query 1294 ATTGTGGGAACACAAAACTTATGTTAAAATTTTGAAAGTCTACTTTGAGCCAGCGAATTC 1353 | ||||| ||||||||||||| || ||| ||||||||||| | ||||||||||||||||| Sbjct 1302 AATGTGGAAACACAAAACTTAGGT-AAATTTTTGAAAGTCGAGTTTGAGCCAGCGAATTC 1360 Query 1354 TGACGTGTAACATTGTTCCTTAAATAGTTAGtt--tt-tttC---AATTATTGAATAATT 1407 ||||||||||| ||||||||| ||||||||| || ||| ||| |||||||||| Sbjct 1361 TGACGTGTAACGTTGTTCCTTTGTTAGTTAGTTAGTTCTTTGGGGAATG-TTGAATAATT 1419 Query 1408 AATTGTTTTACTTT 1421 | || |||||||| Sbjct 1420 ACTTACTTTACTTT 1433 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53135891775 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5