BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G36950.1

Length=1421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482676 jgi|Araly1|482676|fgenesh2_kg.4__1736__AT2G36950.1        1871    0.0  


> Ahg482676 jgi|Araly1|482676|fgenesh2_kg.4__1736__AT2G36950.1
Length=1433

 Score = 1871 bits (1013),  Expect = 0.0
 Identities = 1316/1454 (91%), Gaps = 54/1454 (4%)
 Strand=Plus/Plus

Query  1     TTACTCTCGTTCAAACAATTCTTCGTCCTATTAAATACaaaaaat-aaaaat-----cct  54
             ||||||||||||||||| |||||| |||| ||||||||||||||| ||||||     || 
Sbjct  1     TTACTCTCGTTCAAACATTTCTTCATCCT-TTAAATACAAAAAATAAAAAATAAAAACC-  58

Query  55    ta-aaaaTATATCCTTATCTTCAACCAAGAATGGGAGAGGTCCAAGAAGGTCCCAAAGTT  113
             || |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  59    TAGAAAATA-A-CCTTATCTTCAACCAAGAATGGGAGAGGTCCAAGAAGGTGCCAAAGTT  116

Query  114   GAACAAGAGAAGAAGCCGGCTGCCACCGTAGTCCCAGTTGAGACTACTGACGGCAAGCCA  173
             |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  117   GAACAAGAGAAGAAGCCGGCTGCCACCGTAGTCCCAGTCGAGACTACGGACGGCAAGCCA  176

Query  174   AAGAGCGGCGGAGGAGATTCCGCGGCAGCAGCAGCACCACCGGTCGCCGCGGTTGTCTCT  233
             ||||||||||||||||||||||||||||||||||  || || |  |||||      | ||
Sbjct  177   AAGAGCGGCGGAGGAGATTCCGCGGCAGCAGCAG--CC-CC-G--GCCGC------CGCT  224

Query  234   GCCTTTGTTTACAAAGTGGATATGCACTGTGAAGGCTGCGCTAAGAAGATAAAGCGAATG  293
             ||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||
Sbjct  225   GCCTTTGTTTACAAAGTTGATCTGCACTGCGAAGGCTGCGCTAAGAAGATTAAGCGAATG  284

Query  294   GTTAAGCACTTTGATGGAGTGAAAGATGTGACGGCAGATACTGGTGGAAATAAGCTTTTG  353
             || |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||
Sbjct  285   GTGAAGCACTTTGATGGAGTGAAAGATGTGACGGCGGATACAGGTGGTAATAAGCTTATG  344

Query  354   GTGGTCGGAAAGATTGATCCAGTGAAACTCCAGGAGAAGTTGGAGGAGAAAACCAAGAGA  413
             |||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||
Sbjct  345   GTGGTCGGAAAGATTGATCCGGTGCAACTCCAGGAGAAGTTAGAGGAGAAAACTAAGAGA  404

Query  414   AAGGTGGT--T---C--T----CGCGA-ATCCACCGCCAAAGGTAGAGGGACCTGTTGCT  461
             ||||||||  |   |  |    ||| |  | |||||||||||||||||||||||||||||
Sbjct  405   AAGGTGGTACTCACCAATCCACCGCCACCTTCACCGCCAAAGGTAGAGGGACCTGTTGCT  464

Query  462   GCCGCCGTTGGAGAGAAGAAAGCCGATGGTGGAGATAAGGAGGCGGCTCCTCCTGCTCCT  521
             ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| || ||
Sbjct  465   GCCGCCGTTGGAGAGAAGAAAGCCGATGGAGGAGATAAGGCGGCGGTTCCTCCTCCTGCT  524

Query  522   GCTCCGGCAGCTCCAAAAGAGAGCGT-GGTGCCTTTAAAGATCAGACTACATTGCGAAGG  580
             |||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||
Sbjct  525   GCTCCGGCAGCTCCAAAAGAGAGC-TCCGTGCCTTTAAAGATCAGACTACATTGTGAAGG  583

Query  581   ATGTATTCAGAAAATCAAGAAAATAATATTGAAAATCAAAGGAGTCGAAACAGTGGCTAT  640
             |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct  584   ATGTATTCAGAAAATCAAGAAAATAATATTAAAAATCAAAGGGGTCGAAACCGTGGCTAT  643

Query  641   TGACGGAGCTAAAGACGTGGTGACGGTTAAAGGAACGATAGACGTTAAAGAACTTGTGCC  700
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  644   TGACGGAGCTAAAGACGTGGTGACGGTGAAAGGAACGATAGACGTTAAAGAACTTGTGCC  703

Query  701   TCTACTCACTAAGAAGCTCAAAAGAACCGTCGAGCCTCTTGTTCCCGCCAAAAAAGATGA  760
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  704   TCTCCTCACTAAGAAGCTCAAAAGAACCGTCGAGCCTCTTGTTCCCGCCAAAAAAGATGA  763

Query  761   CGGAGCCGCCGAGAATAAGAAGACGGAAGCTGCCGCTCCTGACGCAAAGAAAGAGGCTCC  820
             ||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||
Sbjct  764   CGGAGCCGCCGAGAAGAAGAAGACGGAAGCCACCGCTCCTGACGCAAAGAAAGAGGCTCC  823

Query  821   GTCCGCCGGAGTTAACGAAGCaaagaaggaaggaagtgacggtggagagaagaaaaaaga  880
             | ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct  824   GACCGCCGGAGTTAACGAAGCAAAGAAGGAAGGAAATGACGGTGGAGAGAAGAAGAAAGA  883

Query  881   ggttggagacggcggagagaagaagaaagaaggtggtgacggcggagagaaa-aagaaag  939
             ||  ||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||
Sbjct  884   GGCCGGAGACGGCGGAGAGAAAAAGAAAGAAGCTGGTGACGGCGGAGA-AAAGAAGAAAG  942

Query  940   aagccggagacggaggagagaagaagaaagaTGGCGGAGG------TGTGCCGGCCCCGG  993
             |||| ||||||||||||||||||||| ||| |||||||||      ||||||||| ||||
Sbjct  943   AAGCTGGAGACGGAGGAGAGAAGAAGGAAGGTGGCGGAGGAGGAGGTGTGCCGGCGCCGG  1002

Query  994   TGGCGATGGTGAATAAGATGGATTATTATGGGTACTCAGCTTATCCAACGGCTCCTATGC  1053
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| 
Sbjct  1003  TGGCGATGGTGAATAAGATGGATTATTATGGGTACTCATCTTATCCAACGGCTCCGATGT  1062

Query  1054  ATTGGCAAGAAGGACACGTGTACGGTCAGAGTTATTCGATGACAGGTCAGAATTATCCAG  1113
             |||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| |
Sbjct  1063  ATTGGCAAGAAGGACACGTGTACGGTCAGAGTTATTCGATGGGAGGTCAGAGTTATCCCG  1122

Query  1114  TGGGAGGTCAGAGTTATCCAGGTTCAGGATACAACTACGCAAGTGAGAGTTACGTGCCGT  1173
             ||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct  1123  TGGCAGGTCAGAGTTATCCAGGTTCAGGATACAACTACGCGACTGAGAGTTACGTGCCCT  1182

Query  1174  ACGCGCAGCCAAACGTGAACGCTCCTGGAATGTTCAGCGACGAGAATCCCAATGGTTGCT  1233
             || ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct  1183  ACTCGCAGCCAAACGTGAACGCTCCTGGAATGTTCAGCGACGAGAACCCCAATGGCTGTT  1242

Query  1234  CTGTTATGTAATAATGGGGTTAAACTGTAAATATAAGAAACTATAAGGGTTTAAAACATA  1293
             | |||||||||||||||||||||| || |||||||||||||| ||||||||||   ||||
Sbjct  1243  CCGTTATGTAATAATGGGGTTAAATTGAAAATATAAGAAACTCTAAGGGTTTATG-CATA  1301

Query  1294  ATTGTGGGAACACAAAACTTATGTTAAAATTTTGAAAGTCTACTTTGAGCCAGCGAATTC  1353
             | ||||| ||||||||||||| || ||| ||||||||||| | |||||||||||||||||
Sbjct  1302  AATGTGGAAACACAAAACTTAGGT-AAATTTTTGAAAGTCGAGTTTGAGCCAGCGAATTC  1360

Query  1354  TGACGTGTAACATTGTTCCTTAAATAGTTAGtt--tt-tttC---AATTATTGAATAATT  1407
             ||||||||||| |||||||||   |||||||||  || |||    |||  ||||||||||
Sbjct  1361  TGACGTGTAACGTTGTTCCTTTGTTAGTTAGTTAGTTCTTTGGGGAATG-TTGAATAATT  1419

Query  1408  AATTGTTTTACTTT  1421
             | ||  ||||||||
Sbjct  1420  ACTTACTTTACTTT  1433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53135891775


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5