BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36970.1 Length=1554 Score E Sequences producing significant alignments: (Bits) Value Ahg321400 jgi|Araly1|321400|fgenesh1_pm.C_scaffold_4001457 2257 0.0 > Ahg321400 jgi|Araly1|321400|fgenesh1_pm.C_scaffold_4001457 Length=1464 Score = 2257 bits (1222), Expect = 0.0 Identities = 1383/1462 (95%), Gaps = 5/1462 (0%) Strand=Plus/Plus Query 45 ATGGAGAGAGCAAAGTCGAGGAAGCCTCATATCATGATGATACCATACCCACTTCAAGGT 104 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGAGAGAGCAAAGTCGAGGAAGCCTCATATCATGATGATACCATATCCACTTCAAGGT 60 Query 105 CACGTTATCCCTTTTGTCCACTTAGCCATCAAACTTGCTTCTCATGGCTTCACCATCACT 164 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 CACGTTATACCTTTTGTCCACTTAGCCATCAAACTAGCTTCTCATGGCTTCACCATCACT 120 Query 165 TTCGTCAACACCGACTCCATCCACCACCACATCTCCACCGCTCACCAAGATGACGCCGGT 224 |||||||||||||||||||||||||||||||||||||| |||| || | |||||||||| Sbjct 121 TTCGTCAACACCGACTCCATCCACCACCACATCTCCACGGCTCGTCACGGTGACGCCGGT 180 Query 225 GACATCTTCTCCGCCGCTCGCAGCTCCGGCCAGCACGACATACGTTACACCACCGTGAGC 284 |||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||| | Sbjct 181 GACATCTTCTCCGCCGCTCGCAGCTCCGGCAAGCTCGATATACGTTACACCACTGTGACC 240 Query 285 GACGGCTTCCCTTTAGACTTTGACCGGTCACTGAACCATGACCAGTTTTTCGAAGGCATT 344 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 GACGGCTTCCCTTTGGACTTTGACCGGTCACTTAACCATGACCAGTTTTTCGAAGGCATT 300 Query 345 CTCCACGTCTTCTCTGCCCACGTGGATGATCTCATCGCCAAACTCTCCCGCCGTGATGAT 404 |||||||||||||||||||||||||||||||||||||| |||||||||| ||| || ||| Sbjct 301 CTCCACGTCTTCTCTGCCCACGTGGATGATCTCATCGCTAAACTCTCCCACCGGGACGAT 360 Query 405 CCTCCCGTGACTTGCTTGATCGCCGACACGTTTTATGTTTGGTCATCTATGATTTGCGAC 464 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CCTCCGGTAACTTGCTTGATCGCCGACACGTTTTATGTTTGGTCATCTATGATTTGCGAC 420 Query 465 AAGCACAACCTTGTAAATGTCTCGTTTTGGACCGAACCTGCCTTGGTCCTCAATCTCTAT 524 ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 421 AAGCACAACCTAGTTAATGTCTCGTTTTGGACTGAACCTGCCTTGGTCCTCAATCTCTAT 480 Query 525 TATCACATGGATCTCCTCATATCTAACGGTCATTTCAAATCTCTTGATAATCGTAAAGAC 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TATCACATGGATCTCCTCATATCTAACGGTCATTTCAAATCTCTTGATAATCGTAAAGAC 540 Query 585 GTGATCGATTACGTACCAGGGGTTAAAGCAATAGAACCAAAGGACTTGATGTCATATCTT 644 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 541 GTGATCGATTACGTACCAGGGGTTAAAGCAATAGACCCAAAGGACTTGATGTCATATCTT 600 Query 645 CAAGTAAGCGACAAAGACGTAGACACAAATACAGTAGTATACAGAATATTATTCAAGGCC 704 ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 601 CAAGTAAGCGAGAAAGACGTAGACACAAATACAGTGGTCTATAGAATATTATTCAAGGCC 660 Query 705 TTTAAAGACGTCAAGAGAGCCGACTTCGTCGTATGCAACACGGTGCAAGAGCTCGAACCA 764 ||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||| Sbjct 661 TTTAAAGACGTCAAGAGAGCCGATTTTGTCTTATGCAACACGGTGCAAGAACTCGAACCA 720 Query 765 GACTCTCTCTCGGCTCTACAAGCCAAACAACCGGTTTACGCTATCGGTCCGGTTTTCTCA 824 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GACTCTCTCTCGGCTTTACAAGCCAAACAACCGGTTTACGCTATCGGTCCGGTTTTCTCA 780 Query 825 ACTGATTCGGTAGTTCCCACAAGCTTATGGGCCGAGTCAGACTGTACCGAGTGGCTTAAG 884 ||| ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 781 ACTCATTCGGTTGTCCCCACAAGCTTATGGGCCGAGTCAGACTGCACCGAGTGGCTTAAG 840 Query 885 GGCCGGCCCACTGGGTCAGTTCTCTACGTCTCGTTTGGTAGCTATGCACATGTTGGTAAG 944 ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GGCAGGCCCACCGGGTCGGTTCTCTACGTCTCGTTTGGTAGCTATGCACATGTTGGTAAG 900 Query 945 AAGGAGATTGTTGAGATAGCTCATGGGCTTTTGCTTAGTGGGATTAGTTTCATTTGGGTT 1004 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 AAAGAGATTGTTGAGATAGCTCATGGGCTTTTGCTTAGTGGGATTAGTTTCATTTGGGTT 960 Query 1005 TTACGTCCGGATATAGTTGGATCCAACGTA-CCAGATTTTCTTCCAGCCGGGTTTGTGGA 1063 |||||||||||||||||||||||| ||| | || ||||||||||||| ||||||||||| Sbjct 961 TTACGTCCGGATATAGTTGGATCCGACG-AGCCGGATTTTCTTCCAGTTGGGTTTGTGGA 1019 Query 1064 CCAAGCCCAAGATCGAGGTCTTGTGGTCCAATGGTGCTGCCAGATGGAAGTTATTTCAAA 1123 |||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| Sbjct 1020 CCAAGCCCAAGATCGAGGTCTTGTGGTCCAGTGGTGTTGCCAGATGGCAGTAATTTCAAA 1079 Query 1124 TCCGGCCGTGGGAGGGTTTTTCACACATTGTGGATGGAATTCAATTCTAGAGAGCGTTTG 1183 ||| || |||||||| ||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1080 TCCAGCTGTGGGAGGTTTTTTTACACATTGTGGATGGAATTCAATTCTAGAGAGTGTTTG 1139 Query 1184 GTGTGGTTTGCCTTTGTTGTGTTATCCACTTTTGACAGATCAGTTCACGAATAGGAAGCT 1243 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1140 GTGTGGTTTGCCTTTGTTGTGTTATCCGCTTTTGACAGATCAGTTCACGAATAGGAAGCT 1199 Query 1244 TGTGGTCGATGATTGGTGCATTGGGATTAATCTTTGTGAGAAGAAGACAATCACAAGGGA 1303 |||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||||| Sbjct 1200 TGTGGTTGATGATTGGTGCATTGGGATTGACCTTTGTGAGAAGAAGACGATCACAAGGGA 1259 Query 1304 CCAAGTCTCAGCGAATGTTAAAAGATTGATGA--A-TGGAGAAACTTCAAGTGAGCTAAG 1360 ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| || Sbjct 1260 CCAAGTCTCGGCGAATGTTAAAAGATTGATGATGAATGGAGAAACTTCAAGTGAGCTGAG 1319 Query 1361 AAACAATGTTGAAAAGGTTAAACGTCATCTCAAAGATGCGGTTACAACCGTTGGATCTTC 1420 ||| || |||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 1320 AAAGAACGTTGAAAAGGTTAAACGTCATCTCAAAGCTGCGGTTACAGCCGTTGGATCTTC 1379 Query 1421 GGAGACGAATTTTAACTTGTTTGTTAGTGAGGTCCGAAATAGAATAGAAACTAAATTGTG 1480 |||||||||||||||| ||| || ||||||||||| ||||||||||||||||||| || Sbjct 1380 GGAGACGAATTTTAACACGTTCATTGGTGAGGTCCGAGATAGAATAGAAACTAAATTATG 1439 Query 1481 TAATGTAAATGGACTAGAAATA 1502 ||||||||||||||| |||||| Sbjct 1440 TAATGTAAATGGACTGGAAATA 1461 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58201894360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5