BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36990.1
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482682 jgi|Araly1|482682|fgenesh2_kg.4__1742__AT2G36990.1 3055 0.0
> Ahg482682 jgi|Araly1|482682|fgenesh2_kg.4__1742__AT2G36990.1
Length=1965
Score = 3055 bits (1654), Expect = 0.0
Identities = 1884/1991 (95%), Gaps = 31/1991 (2%)
Strand=Plus/Plus
Query 3 GTGTGTCGCCTTATCTGTTCGTCATGGCTCTGTAGAGTAGCCTCATGTTCTTATTCTTCT 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGTGTCGCCTTATCTGTTCGTCATGGCTCTGTAGAGTAGCCTCATGTTCTTATTCTTCT 60
Query 63 TCTTCCTTAGCCATTCGTGGAAGCAAAAACAGAGTCTTTTATT-CTTTGGTGATTCTGTG 121
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 61 TCTTCCTTAGCCATTCGTGGAAGCAAAAACAGAGTCTTTT-TTACTTTGGTGATTCTGTG 119
Query 122 AAATGGAAGCTACGAGGAACTTGGTTTCTTCATCTCCTTCGTTTCAGACAAAGACTCATC 181
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 120 AAATGGAAGCTACGAGGAACTTGGTTTCTTCGTCTCCTTCGTTTCAGACAAAGACCCATC 179
Query 182 TCAAGAGCAGCTACTCTTCTCCTTCCTCTGTAGTGATGCTTCATGATCAAACAACAACTC 241
|| | || |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 180 TC-A-AG-AGCTACTCTTCTCCTTCCTCAGTAGTGATGCTTCATGAGCAAACAACAACTC 236
Query 242 CTGTTGTTAACTCACGTCATCTCAATTCTCTATCTCGACATTTTCCTGCGTCGGTTCTCT 301
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTGTAGTTAACTCACGTCATCTCAATTCTCTATCTCGACATTTTCCTGCGTCGGTTCTCT 296
Query 302 CACAGGAGCCACGGGAAGAGTCTAGGCCTCTGTCACATGCGTTAAGAGACGATAGAACAT 361
||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||
Sbjct 297 CACAGGAGCCACGGGAAGAGTCTAGGCCTTTGTCACATGCGTTAAGGGAAGACAGAACAT 356
Query 362 CCCAGTTGACTCTGGAGAGGAGGCAGTTTGATGAATTGGTTTCATCTCGAGAAGATGAGA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCCAGTTGACTCTGGAGAGGAGGCAGTTTGATGAATTGGTTTCATCTCGAGAAGATGAGA 416
Query 422 AATTTGAACAGCAACTTCTTCACTCTACTGGTTTATGGAATTTATTAATATCTCCTTTAA 481
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 417 AATTTGAACAGCAACTTCTTCACTCTGCTGGTTTATGGAATTTATTGATATCTCCTTTAA 476
Query 482 CATCTGAAACGAAATTGCCGGCAGTTGTGTCTCCTTTAGCTGATGCAGAGCTTTGTGATG 541
|| ||||||||||||||||| ||||||| | || ||||| ||||||||||||||||||
Sbjct 477 CAGCTGAAACGAAATTGCCGCCAGTTGTACCGCCCTTAGCAGATGCAGAGCTTTGTGATA 536
Query 542 TGGTTGCACTAGCTCAGAAGGCTTTATCAGCTTCAAAACAAGCTGCATTGTTAGTTGATG 601
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 537 TTGTTGCACTAGCTCAGAAGGCTTTATCAGCTTCAAAACAAGCTGCATTGTTAGCTGACG 596
Query 602 ACACTGAAGCAAATCCATCTGACAACATCAAGGATTCTCTCTCCACTAGCTCTTCTATGT 661
|||||||||| |||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 597 ACACTGAAGCTAATCCATCTGACAACACCAGGGGTTCTCTCTCCACTAGCTCTTCTATGT 656
Query 662 CCTTACCGGAAAAGGGAAACATAGTAAGATCGAAGCGGCAGCTAGAGAGACGAGCAAAGA 721
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 657 CCTTACCGGAAAAGGGAGCCATAGTAAGATCGAAGCGGCAGCTGGAGAGACGAGCAAAGA 716
Query 722 ACAGACGGGCTCCAAAATCAAACGATGTGGACGATGAGGGTTATGTTCCTCAGAAAACTA 781
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 717 ACAGACGGGCTCCTAAATCAAACGATGTGGACAATGAGGGTTATGTTCCTCAGAAAATTA 776
Query 782 GTGCGAAGAAAAAGTATAAACAAGGGGCTGATAATGATGATGCGCTTCAGCTCTTCTTGT 841
||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 777 ATGCCAAGAAAAAGTTTAAACAAGGGGTTGATACTGATGATGCGCTTCAGCTCTTCTTGT 836
Query 842 GGGGACCTGAGACAAAACAACTTCTGACTGCTAAAGAAGAAGCTGAGCTGATATCACATA 901
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 837 GGGGACCTGAGACAAAACAACTTCTGACTGCTAAAGAGGAAGCTGAGCTGATATCACATA 896
Query 902 TACAGCATTTATTAAAGTTGGAGAAGGTAAAGACTAAACTTGAATCTCAAAACGGCTGCG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TACAGCATTTATTAAAGTTGGAGAAGGTAAAGACTAAACTTGAATCTCAAAACGGCTGCG 956
Query 962 AACCAACAATAGGCGAGTGGGCTGAAGCTATGGGGATAAGTTCCCCTGTCTTAAAATCTG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AACCAACAATAGGCGAGTGGGCTGAAGCTATGGGGATAAGTTCCCCTGTCTTAAAATCTG 1016
Query 1022 ATATCCACCGTGGGAGAAGCAGCCGGGAAAAGTTGATTACAGCAAACCTACGTCTGGTAG 1081
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AAATCCACCGTGGTAGAAGCAGCCGGGAAAAGTTGATTACAGCAAACCTACGTCTGGTAG 1076
Query 1082 TCCATATAGCTAAACAATATCAGAATCGTGGACTCAACTTTCAGGACTTATTGCAGGAAG 1141
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1077 TCCATATAGCTAAACAATATCAGAATCGTGGGCTCAACTTTCAGGACTTATTGCAGGAAG 1136
Query 1142 GAAGCATGGGGCTAATGAAAAGTGTAGAAAAATTCAAACCGCAATCCGGATGCAGATTCG 1201
|||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
Sbjct 1137 GAAGCATGGGGCTAATGAAAAGTGTAGAGAAGTTCAAACCGCAATCTGGATGCAGATTTG 1196
Query 1202 CTACTTACGCTTACTGGTGGATTCGACAATCCATAAGAAAGTCTATATTTCAAAACTCCA 1261
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CTACTTACGCCTACTGGTGGATTCGACAATCCATAAGAAAGTCTATATTTCAAAACTCCA 1256
Query 1262 GAACAATCCGTTTACCGGAGAACGTATACATGCTACTAGGCAAAGTATCCGAAGCCAGAA 1321
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1257 GAACAATCCGTTTACCGGAGAACGTATACATGCTACTTGGAAAAGTATCCGAAGCCAGGA 1316
Query 1322 AAACTTGCGTGCAGGAAGGGAATTACCGACCAAGTAAAGAGGAACTCGCTGGCCACGTTG 1381
|||| |||||||||||||| || ||||| |||||||||||| |||| || ||||||||||
Sbjct 1317 AAACGTGCGTGCAGGAAGGAAACTACCGTCCAAGTAAAGAGCAACTAGCAGGCCACGTTG 1376
Query 1382 GGGTTTCAACAGAGAAGCTGGATAAACTGCTGTACAATACAAGAACACCTCTTTCAATGC 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GGGTTTCAACAGAGAAGCTGGATAAACTGCTGTACAATACAAGAACACCTCTTTCAATGC 1436
Query 1442 AACAGCCCATTTGGTCTGATCAAGACACCACCTTTCAGGAAATAACACCAGACAGTGGGA 1501
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AACAACCCATTTGGTCTGATCAAGACACCACCTTTCAGGAAATAACACCAGACAGTGGGA 1496
Query 1502 TTGAGACACCAACAATGAGCGTGGGGAAGCAGCTGATGAGGAACCATGTACGGAATCTCC 1561
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1497 TTGAGACACCAACGATGAGCGTGGGGAAGCAGATGATGAGGAACCATGTACGGAATCTCC 1556
Query 1562 TCAATGTACTGAGTCCAAAGGAGAGAAGGATCATCAAGCTGAGATTTGGGATTGATGGCG 1621
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TAAATGTACTGAGCCCAAAGGAGAGAAGGATCATCAAGCTGAGATTTGGGATTGATGGCG 1616
Query 1622 GTAAACAGAGATCGTTATCGGAAATAGGAGAGATTTACGGATTGTCAAAGGAGAGGGTAA 1681
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 1617 GTAAACAGAGATCGTTATCAGAAATAGGAGAGATTTACGGACTGTCGAAGGAGAGGGTAA 1676
Query 1682 GGCAGCTAGAGAGCCGGGCATTGTACAGGCTTAAGCAGAACATGAACAGCCATGGACTTC 1741
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1677 GGCAGTTAGAGAGCCGGGCATTGTACAGGCTTAAGCAGAACATGAACAGCCATGGACTCC 1736
Query 1742 ATGCTTATGCTGATTTGCTTGTCTAGCTCATGGAGATATTGGTTTCTTCTATTA-TAATG 1800
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1737 ATGCTTATGCTGATTTGCTTGTCTAGCTCATGGAGATATTGGTTTCTTCTATTAATAATG 1796
Query 1801 --ATGTGTATACAAAATATACTTTTGTTGATATTATGAGGAATAGTGTTT-CTTGGATAA 1857
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1797 GTATGTGTATACAAAATATACTTTTGTTGATATTCTGAGGAATAGTGTTTTCTTGGATAA 1856
Query 1858 GAGTTTTGCCGTTAAAACTTTGTTTATTGTGGTAGTTAAGGAAAAAGAGGGATTACCACA 1917
|||||||| | || | | |||||||||||||||||||||||||
Sbjct 1857 GAGTTTTG--G----------GT--A-------A-TTAAGGAAAAAGAGGGATTACCACA 1894
Query 1918 TTTTCATAATTTGTTTATCTCTGCTTTCTGTGCAATTGTGCATATCTGTTTTAGTTCTTG 1977
||| ||||||||||||| |||| || |||| |||||||||||||||||||| |||||
Sbjct 1895 CTTTGATAATTTGTTTATTTCTGATTGATGTGTAATTGTGCATATCTGTTTTACTTCTTT 1954
Query 1978 TAATCAAATTT 1988
|||||||||||
Sbjct 1955 TAATCAAATTT 1965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75609136325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5