BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37110.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934359 jgi|Araly1|934359|scaffold_402347.1 1184 0.0
> Ahg934359 jgi|Araly1|934359|scaffold_402347.1
Length=795
Score = 1184 bits (641), Expect = 0.0
Identities = 745/796 (94%), Gaps = 4/796 (1%)
Strand=Plus/Plus
Query 92 ATCGTTTTGTGCAGATTTGATCTTGCGTTAATTTTCTAAGCAAAATATGGCGGGAGAAGA 151
||||| |||| |||| ||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct 3 ATCGTCTTGTCCAGA-TTGATCTTGCGTTAA-TTTCTAAGCACAATATGGCGGCAGAAGA 60
Query 152 TAGCCGTGAAGCTCAACGAGGCGACGAATATGAGGAATCGAGTCCTCTCTTGAAGGTGAA 211
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct 61 TAGCCGTGAAGCTCAACGAGGCGACGAACATGAGGAATCGAGTCCTCTCTTGCAGGGGAA 120
Query 212 CGAGAATGACGGCAAGATCTGCTCGAAAAGAGATGCCAAGGCGGCGCCTCTTGTGCCTCC 271
||||| ||||||||||||||||||||| ||||| ||||||||||| | |||||||||||
Sbjct 121 AGAGAACGACGGCAAGATCTGCTCGAAAGGAGATTCCAAGGCGGCGTCGCTTGTGCCTCC 180
Query 272 TCCCGCGGCGGAGGAATACGGCTGGACGGCGGATGGATTGCCTGTGAGCCATGGTAGCGT 331
||||||||| ||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct 181 TCCCGCGGCAGAGGAATACGGTTGGACGGCGGATGGATTGCCGGTGAGCCAGGGGAGCGT 240
Query 332 GATTGGCGAGCCGATCAGGAGAAACCAGTGGAATTCTGGTCTTTTTACCTGTCTT-GGTC 390
|||||||||||||||||||||||| ||||||||||| ||||| ||||||||| || || |
Sbjct 241 GATTGGCGAGCCGATCAGGAGAAATCAGTGGAATTCGGGTCTGTTTACCTGT-TTAGGCC 299
Query 391 GCAATGATGAATTTTGCAGCAGCGATCTCGAAGTTTGTCTTCTTGGAAGTGTGGCTCCTT 450
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 GCAATGATGAATTTTGCAGCAGCGATCTCGAAGTTTGTCTTCTTGGAAGTGTGGCTCCAT 359
Query 451 GTGTGTTGTATGGAACTAATGCAGAGAGACTTGGGTCTGCTCCGGGAACATTTTCAAACC 510
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 GTGTGTTGTATGGAACTAATGCAGAGAGACTTGGCTCTGCTCCGGGAACATTTTCAAACC 419
Query 511 ATTGCTTGACGTATTTGGGATTGTACTTTGTTGGTAATTCTTTGTTTGGCTGGAACTGTC 570
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 ATTGCTTGACGTATTTGGGATTGTACTTTGTTGGTAATTCTTTGTTTGGCTGGAACTGCC 479
Query 571 TTGCTCCATGGTTCTCTTATTCTAGCCGTTCTGCTATTCGCCGAAAGTTTAACCTTGAGG 630
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGCTCCCTGGTTCTCTTATTCTAGCCGTTCTGCTATTCGCCGAAAGTTTAACCTTGAGG 539
Query 631 GAAGCTTTGAGGCTATGAACAGGTCTTGTGGTTGCTGCGGTGGCTGCATAGAGGACGAGA 690
|||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct 540 GAAGTTTTGAGGCTATGAACAGGTCGTGTGGTTGCTGCGGTAGCTGCATAGAAGACGAGA 599
Query 691 TGCAAAGGGAACACTTGGAGACGACTTGTGACTTTGTGACACATGTCCTTTGCCATACAT 750
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 600 TGCAAAGGGAACACTTGGAGACAACTTGTGACTTTGTGACACATGTCCTATGTCATACAT 659
Query 751 GTGCCCTTTGCCAAGAAGGGCGTGAGCTCCGCAGGAAGGTTCTTCACCCAGGTTTCAATG 810
|||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 660 GTGCACTTTGCCAAGAAGGCCGGGAGCTCCGCAGGAAGGTTCTTCACCCGGGTTTCAATG 719
Query 811 CTCAGTCCACCGTTGTTGTGATGCCACCCATAGAACAAACCATGGGTCGTAAGTGAAGCT 870
||||||||||||| || |||||||||| | ||| ||||||||||||||||| |||||||
Sbjct 720 CTCAGTCCACCGTGGTCATGATGCCACCTAGAGAGCAAACCATGGGTCGTAAATGAAGCT 779
Query 871 TACATAGAGTCGAGTG 886
| | | ||||||||||
Sbjct 780 TGCTTTGAGTCGAGTG 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5