BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37130.1 Length=1361 Score E Sequences producing significant alignments: (Bits) Value Ahg345443 jgi|Araly1|345443|fgenesh1_pg.C_scaffold_4001785 1585 0.0 > Ahg345443 jgi|Araly1|345443|fgenesh1_pg.C_scaffold_4001785 Length=984 Score = 1585 bits (858), Expect = 0.0 Identities = 942/984 (96%), Gaps = 0/984 (0%) Strand=Plus/Plus Query 74 ATGGCCAATGCGAAGCCCTTTTGTCTCCTCGGCTTCTTTTGTCTGTTATTACAGTTATTC 133 |||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| Sbjct 1 ATGGCCAATGCGAAGCACTTTTGTCTCTTCGGGGTCTTTTGTCTGTTATTACAGTTATTC 60 Query 134 TCCATCTTCCATATCGGAAATGGGGAATTGGAGATGAACTATTACAAAGAGAGTTGTCCA 193 |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 61 TCCATCTTCCGTATCGGAAATGGGGAATTGGAGATGAACTATTACAGAGAAAGTTGTCCA 120 Query 194 AAAGCGGAAGAGATAATAAGACAACAAGTGGAGACGCTTTACTACAAACACGGTAACACA 253 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 AAAGCGGAAGAGATTATAAGACAACAAGTGGAGACGCTTTACTACAAACACGGCAACACA 180 Query 254 GCCGTATCTTGGCTCCGTAATCTCTTCCATGACTGTGTCGTCAAGTCGTGTGATGCGTCG 313 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 181 GCCGTATCTTGGCTCCGTAATCTCTTCCATGACTGCGTCGTCAAGTCGTGTGATGCGTCG 240 Query 314 CTGCTGCTAGAGACAGCGAGAGGTGTGGAATCTGAGCAGAAATCGAAGAGGAGTTTCGGT 373 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTGCTTCTAGAGACAGCGAGAGGTGTGGAATCTGAGCAGAAATCGAAGAGGAGTTTCGGT 300 Query 374 ATGAGAAACTTTAAGTACGTTAAGATTATCAAAGACGCACTCGAGAAAGAGTGTCCTTCC 433 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATGAGAAACTTTAAGTACGTTAAGATTATCAAAGACGCACTCGAGAAAGAGTGTCCTTCA 360 Query 434 ACAGTCTCTTGTGCTGATATTGTCGCTCTTTCTGCGAGAGACGGTATTGTCATGTTGAAA 493 ||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||| ||||| Sbjct 361 ACAGTTTCTTGCGCTGATATAGTCGCTCTCTCTGCTAGAGACGGTATTGTCATGCTGAAA 420 Query 494 GGGCCAAAGATAGAGATGATAAAGACAGGAAGGAGAGATAGTAGAGGGAGCTACTTGGGA 553 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 421 GGGCCAAAGATAGAGATGATAAAGACAGGAAGGAGAGATAGCAGAGGGAGCTATTTGGGA 480 Query 554 GATGTTGAGACTCTAATCCCTAACCACAATGACTCTCTCTCATCTGTTATCTCCACCTTT 613 |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| Sbjct 481 GATGTTGAGACTCTAATCCCTAACCACAATGACTCTCTTTCCTCTGTTATATCCACCTTT 540 Query 614 AACTCCATTGGCATCGATGTCGAAGCCACCGTCGCTCTCTTAGGTGCTCACTCAGTGGGT 673 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AACTCCATTGGTATCGATGTCGAAGCCACCGTCGCTCTCTTAGGTGCTCACTCAGTGGGT 600 Query 674 AGGGTCCACTGCGTTAACCTAGTGCACCGGCTATACCCAACGATTGACCCTACTCTCGAC 733 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 601 AGGGTCCACTGCGTTAACCTAGTGCACCGGCTATACCCAACGATTGACCCGACTCTCGAC 660 Query 734 CCAAGTTACGCCCTTTACTTaaaaaaaCGTTGCCCAAGTCCAACACCGGACCCGAACGCC 793 | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 661 CAAAGTTATGCCCTTTACTTAAAAAATCGTTGCCCAAGTCCAACACCGGACCCGAACGCC 720 Query 794 GTCTTGTACTCCCGTAACGATCGTGAGACTCCGATGGTTGTGGACAACATGTATTATAAG 853 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 721 GTCTTGTACTCCCGCAACGATCGTGAGACTCCGATGGTTGTGGACAACATGTATTACAAG 780 Query 854 AACATCATGGCCCATAAGGGGCTTCTTGTCATTGATGATGAGCTAGCCACCGATCCCAGG 913 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 781 AATATCATGGCACATAAGGGGCTTCTTGTCATTGATGATGAGCTAGCCACCGATCCGAGG 840 Query 914 ACCGCACCGTTTGTGGCCAAGATGGCTGCGGACAATAATTACTTCCATGAGCAGTTCTCA 973 |||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| Sbjct 841 ACCGCACCGTTTGTCGCCAAGATGGCTACGGACAATGGTTACTTCCATGAGCAGTTCTCA 900 Query 974 CGTGGCGTCAGGCTCTTGTCCGAGACCAACCCGCTCACGGGAGACCAAGGGGAGATCAGG 1033 ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 901 CGTGGCGTCAGACTCTTGTCCGAGACCAACCCACTCACTGGAGACCAAGGGGAGATCAGG 960 Query 1034 AAGGATTGTCGTTATGTGAACTAA 1057 |||||||| || |||||||||||| Sbjct 961 AAGGATTGCCGATATGTGAACTAA 984 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50932217112 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5