BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37170.1
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482707 jgi|Araly1|482707|fgenesh2_kg.4__1767__AT2G37170.1 1404 0.0
Ahg485715 jgi|Araly1|485715|fgenesh2_kg.5__1707__AT3G53420.1 946 0.0
Ahg934366 jgi|Araly1|934366|scaffold_402354.1 846 0.0
> Ahg482707 jgi|Araly1|482707|fgenesh2_kg.4__1767__AT2G37170.1
Length=998
Score = 1404 bits (760), Expect = 0.0
Identities = 931/1011 (92%), Gaps = 21/1011 (2%)
Strand=Plus/Plus
Query 26 ACAAAACACAACTTTCATATATAACaaaaaaaGTTATAGAAATGGCCAAAGACGTGGAAG 85
|||||||||||||||| ||| ||| |||||| |||||||||||| |||||||||||||
Sbjct 1 ACAAAACACAACTTTC--ATA-AAC--AAAAAG-TATAGAAATGGCGAAAGACGTGGAAG 54
Query 86 GACCTGAGGGATTTCAGACAAGAGACTACGAAGATCCGCCACCAACTCCGTTTTTCGATG 145
|||||||||| |||||||| || |||||||| |||||||||||||| ||||||||||| |
Sbjct 55 GACCTGAGGGGTTTCAGACGAGGGACTACGAGGATCCGCCACCAACACCGTTTTTCGACG 114
Query 146 CGGACGAGCTTACCAAGTGGTCTTTATACAGAGCCGTCATTGCCGAGTTCGTAGCCACTC 205
|||| |||||||| |||||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct 115 CGGAGGAGCTTACGAAGTGGTCTTTATACAGAGCAGTCATCGCTGAGTTCGTAGCTACTC 174
Query 206 TCCTCTTCTTGTACATCACCGTTTTAACTGTCATCGGTTACAAGATTCAGTCCGACACAA 265
|||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||| ||
Sbjct 175 TCCTCTTCTTGTACGTCACCGTTTTGACTGTTATCGGTTACAAGATTCAGTCTGACA-AA 233
Query 266 A-AGCCGGTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGGCATCGCGTGGGCTTTTGGT 324
| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 234 ACCGCCGGTGGAGTTGACTGTGGCGGCGTTGGAATCCTCGGTATCGCGTGGGCTTTTGGT 293
Query 325 GGCATGATCTTCATCCTTGTCTACTGCACCGCCGGTATCTCAGGTGGTCACATAAACCCT 384
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 294 GGCATGATCTTCATTCTTGTCTACTGCACCGCTGGTATCTCAGGTGGTCACATAAACCCG 353
Query 385 GCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGATTAGGGCGGTGCTTTAC 444
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 354 GCGGTGACGTTTGGTTTGTTCTTGGCACGGAAGGTGTCGCTGATTAGGGCGGTGCTTTAC 413
Query 445 ATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGG-TTTCGTCAAAGCCTTTCAAAG 503
|||||||||||||||||||||||||||||||||||||| ||| || || || ||||||||
Sbjct 414 ATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTT-GTGAAGGCTTTTCAAAG 472
Query 504 CTCTTACTATGATCGTTACGGTGGAGGAGCCAACTCTCTAGCAGACGGCTACAACACAGG 563
||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 473 CTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGCCGACGGTTACAACACTGG 532
Query 564 CACCGGACTAGCCGCAGAGATCATTGGAACATTCGTTCTCGTCTACACAGTCTTCTCCGC 623
||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 533 CACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCGTCTACACAGTCTTCTCCGC 592
Query 624 TACTGATCCCAAACGTAACGCTAGAGACTCCCACGTTCCGGTTTTGGCGCCACTTCCGAT 683
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 593 CACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCGAT 652
Query 684 TGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCACCGGAACCGGCATCAA 743
||||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 653 TGGGTTTGCTGTGTTTATGGTACATTTGGCAACAATTCCGATCACCGGAACCGGTATCAA 712
Query 744 CCCGGCTAGGAG-TTTCGGAGCTGCCGTAATCTATAACAAGAGCAAGCCATGGGATGACC 802
|||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct 713 CCCGGCTAGGAGCTTT-GGAGCTGCCGTAATCTTTAACGAGAGCAAGCCATGGGATGACC 771
Query 803 ACTGGATATTCTGGGTGGGACCATTCATTGGAGCTGCGATAGCTGCATTTTATCACCAAT 862
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 772 ACTGGATATTCTGGGTGGGACCATTCATTGGAGCTGCAATAGCTGCATTTTATCACCAAT 831
Query 863 TTGTCCTAAGGGCTTCAGGTTCCAAGTCACTTGGATCCTTCAGAAGTGCAGCCAACGTTT 922
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 832 TTGTCCTCAGGGCTTCAGGTTCCAAGTCACTCGGATCCTTCAGAAGTGCAGCCAACGTCT 891
Query 923 GAGTTTTTGCCACACaaaaaaaaaCCTATCATAATAACAACAATTACAAAATGGTTGTGT 982
|||||| |||||| |||| || | ||||||||||||||||||| |||||| ||||||
Sbjct 892 GAGTTTAAGCCACA-AAAACAATA---ATCATAATAACAACAATTATAAAATGCTTGTGT 947
Query 983 TATTATGTATGTA----CAAAAA-TTGGCAACTTTGCTTGTAAAACTATGC 1028
||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 948 TATTATGTATGTATGTACAAAAAATTGGCAACTTTGCTTGTAAAACTATGC 998
> Ahg485715 jgi|Araly1|485715|fgenesh2_kg.5__1707__AT3G53420.1
Length=1272
Score = 946 bits (512), Expect = 0.0
Identities = 729/834 (87%), Gaps = 14/834 (2%)
Strand=Plus/Plus
Query 94 GGATTTCAGACAAGAGACTA-CGAAGATCCGCCACCAACTCCGTTT-TTCGATGCGGA-C 150
|||||||||||||||||||| | | |||||||| ||| |||||||| || ||| ||| |
Sbjct 238 GGATTTCAGACAAGAGACTATC-ATGATCCGCCGCCAGCTCCGTTTATT-GAT--GGAGC 293
Query 151 -GAGCTTACCAAGTGGTCTTTATACAGAGCCGTCATTGCCGAGTTCGTAGCCACTCTCCT 209
||||| | ||||||||||| |||||||| ||||| |||||||||||||| ||||||||
Sbjct 294 GGAGCTAAAGAAGTGGTCTTTTTACAGAGCAGTCATCGCCGAGTTCGTAGCTACTCTCCT 353
Query 210 CTTCTTGTACATCACCGTTTTAACTGTCATCGGTTACAAGATTCAGTCCGACACAAAAGC 269
|||||| ||| |||||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 354 CTTCTTATACGTCACCGTTTTGACTGTCATCGGTTACAAGATTCAGTCCGATACTAAGGC 413
Query 270 CGGTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGGCATCGCGTGGGCTTTTGGTGGCAT 329
||| || || ||||||||||| || |||||||| || ||||| ||||| |||||||| ||
Sbjct 414 CGGCGGGGTAGACTGCGGCGGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTAT 473
Query 330 GATCTTCATCCTTGTCTACTGCACCGCCGGTATCTCAGGTGGTCACATAAACCCTGCGGT 389
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 474 GATCTTCATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGT 533
Query 390 GACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGATTAGGGCGGTGCTT-TACATGG 448
||| ||||| | ||||| || || || || ||| || |||||| | || ||||| |
Sbjct 534 GACATTTGGGCTATTCTTGGCACGTAAAGTGTCGTTGCCTAGGGCCAT-ATTGTACATTG 592
Query 449 TGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGG-TTTCGTCAAAGCCTTTCAAAGCTCT 507
||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||
Sbjct 593 TGGCTCAGTGTTTGGGTGCGATTTGTGGAGTTGGATTT-GTCAAAGCCTTCCAAAGCTCT 651
Query 508 TACTATGATCGTTACGGTGGAGGAGCCAACTCTCTAGCAGACGGCTACAACACAGGCACC 567
|||||||| |||||||| || |||||||||||||| || || ||||||| |||||| |||
Sbjct 652 TACTATGACCGTTACGGCGGTGGAGCCAACTCTCTTGCCGATGGCTACAGCACAGGGACC 711
Query 568 GGACTAGCCGCAGAGATCATTGGAACATTCGTTCTCGTCTACACAGTCTTCTCCGCTACT 627
|| ||||| |||||||||||||| || |||||||| |||||||| |||||||| || |||
Sbjct 712 GGTCTAGCGGCAGAGATCATTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCTGCCACT 771
Query 628 GATCCCAAACGTAACGCTAGAGACTCCCACGTTCCGGTTTTGGCGCCACTTCCGATTGGG 687
|| |||||||||| || |||||||||||||||||||| |||||||||||||| || ||
Sbjct 772 GACCCCAAACGTAGTGCCAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCAATCGGA 831
Query 688 TTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCACCGGAACCGGCATCAACCCG 747
|| |||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct 832 TTCGCGGTGTTCATGGTACATTTGGCCACCATTCCCATCACCGGAACCGGAATTAACCCG 891
Query 748 GCTAGGAGTTTCGGAGCTGCCGTAATCTAT-AACAAGAGCAAGCCATGGGATGACCACTG 806
|| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 892 GCAAGGAGTTTCGGAGCTGCCGTAATCT-TCAACAAGAGCAAGCCATGGGATGACCACTG 950
Query 807 GATATTCTGGGTGGGACCATTCATTGGAGCTGCGATAGCTGCATTTTATCACCAATTTGT 866
|||||| ||||| |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 951 GATATTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCTGCATTCTACCACCAATTCGT 1010
Query 867 CCTAAGGGCTTCAGGTTCCAAGTCACTTGGATCCTTCAGAAGTGCAGCCAACGT 920
|| |||||||||||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct 1011 TCTGAGGGCTTCAGGTTCTAAGTCTCTCGGATCTTTCAGAAGTGCTGCCAACGT 1064
> Ahg934366 jgi|Araly1|934366|scaffold_402354.1
Length=826
Score = 846 bits (458), Expect = 0.0
Identities = 525/558 (94%), Gaps = 2/558 (0%)
Strand=Plus/Plus
Query 368 GTGGTCACATAAACCCTGCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGA 427
|||||||||||||||| |||||||| || || |||||||| || |||||||| |||||||
Sbjct 250 GTGGTCACATAAACCCGGCGGTGACATTGGGATTGTTCTTGGCTCGGAAGGTGTCGCTGA 309
Query 428 TTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTT-GGTTTC 486
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 310 TTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTT- 368
Query 487 GTCAAAGCCTTTCAAAGCTCTTACTATGATCGTTACGGTGGAGGAGCCAACTCTCTAGCA 546
|| || || ||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 369 GTGAAGGCTTTTCAAAGCTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGCC 428
Query 547 GACGGCTACAACACAGGCACCGGACTAGCCGCAGAGATCATTGGAACATTCGTTCTCGTC 606
||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||
Sbjct 429 GACGGTTACAACACAGGCACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCGTC 488
Query 607 TACACAGTCTTCTCCGCTACTGATCCCAAACGTAACGCTAGAGACTCCCACGTTCCGGTT 666
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 489 TACACAGTCTTCTCCGCCACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTG 548
Query 667 TTGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATC 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TTGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATC 608
Query 727 ACCGGAACCGGCATCAACCCGGCTAGGAGTTTCGGAGCTGCCGTAATCTATAACAAGAGC 786
||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||||
Sbjct 609 ACCGGAACCGGTATCAACCCGGCCAGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGC 668
Query 787 AAGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTGCGATAGCT 846
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 669 AAGCCATGGGATGACCACTGGATATTCTGGGTAGGACCATTCATTGGAGCTGCGATAGCT 728
Query 847 GCATTTTATCACCAATTTGTCCTAAGGGCTTCAGGTTCCAAGTCACTTGGATCCTTCAGA 906
||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||
Sbjct 729 GCATTTTATCACCAATTTGTCCTCAGGGCCTCAGGTTCCAAGTCACTCGGTTCCTTCAGA 788
Query 907 AGTGCAGCCAACGTTTGA 924
|||||||| |||||||||
Sbjct 789 AGTGCAGCAAACGTTTGA 806
Score = 261 bits (141), Expect = 8e-69
Identities = 169/183 (92%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 67 ATGGCCAAAGACGTGGAAGGACCTGAGGGATTTCAGACAAGAGACTACGAAGATCCGCCA 126
||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 21 ATGGCGAAAGACGTGGAAGGACCTGAGGGATTTCAGACGAGGGACTACGAAGATCCTCCG 80
Query 127 CCAACTCCGTTTTTCGATGCGGACGAGCTTACCAAGTGGTCTTTATACAGAGCCGTCATT 186
|| |||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct 81 CCTACTCCGTTTTTCGACGCGGAGGAGCTTACCAAGTGGTCTTTGTACAGAGCAGTCATC 140
Query 187 GCCGAGTTCGTAGCCACTCTCCTCTTCTTGTACATCACCGTTTTAACTGTCATCGGTTAC 246
|||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 141 GCCGAGTTCGTAGCTACTCTCCTCTTCTTATACGTCACCGTTTTAACTGTCATCGGTTAC 200
Query 247 AAG 249
|||
Sbjct 201 AAG 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42735789957
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5