BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37180.1 Length=1147 Score E Sequences producing significant alignments: (Bits) Value Ahg482707 jgi|Araly1|482707|fgenesh2_kg.4__1767__AT2G37170.1 1234 0.0 Ahg485715 jgi|Araly1|485715|fgenesh2_kg.5__1707__AT3G53420.1 891 0.0 Ahg934366 jgi|Araly1|934366|scaffold_402354.1 867 0.0 > Ahg482707 jgi|Araly1|482707|fgenesh2_kg.4__1767__AT2G37170.1 Length=998 Score = 1234 bits (668), Expect = 0.0 Identities = 807/875 (92%), Gaps = 5/875 (1%) Strand=Plus/Plus Query 72 ATGGCTAAAGACGTGGAAGGACCTGATGGATTTCAGACGAGAGATTACGAAGATCCTCCG 131 ||||| |||||||||||||||||||| || ||||||||||| || ||||| ||||| || Sbjct 36 ATGGCGAAAGACGTGGAAGGACCTGAGGGGTTTCAGACGAGGGACTACGAGGATCCGCCA 95 Query 132 CCAACACCGTTTTTCGACGCAGAGGAGCTTACCAAGTGGTCTTTATACAGAGCAGTCATC 191 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 96 CCAACACCGTTTTTCGACGCGGAGGAGCTTACGAAGTGGTCTTTATACAGAGCAGTCATC 155 Query 192 GCCGAGTTCGTAGCCACTCTCCTCTTCTTGTACGTCACCGTTTTAACTGTCATTGGTTAC 251 || ||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 156 GCTGAGTTCGTAGCTACTCTCCTCTTCTTGTACGTCACCGTTTTGACTGTTATCGGTTAC 215 Query 252 AAGATTCAGTCCGACACAAA-AGCCGGTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGG 310 ||||||||||| |||| ||| ||||||||||||||||| |||||||| |||||||| || Sbjct 216 AAGATTCAGTCTGACA-AAACCGCCGGTGGAGTTGACTGTGGCGGCGTTGGAATCCTCGG 274 Query 311 CATCGCGTGGGCTTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACCGCCGGTATCTC 370 |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 275 TATCGCGTGGGCTTTTGGTGGCATGATCTTCATTCTTGTCTACTGCACCGCTGGTATCTC 334 Query 371 AGGTGGTCACATAAACCCTGCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCT 430 |||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||| Sbjct 335 AGGTGGTCACATAAACCCGGCGGTGACGTTTGGTTTGTTCTTGGCACGGAAGGTGTCGCT 394 Query 431 GATTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTT 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 GATTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTT 454 Query 491 TGTGAAGGCATTTCAAAGCTCTCACTATGTTAATTACGGTGGAGGAGCCAACTTTCTAGC 550 ||||||||| |||||||||||| |||| ||| |||||||||||||||||||| |||||| Sbjct 455 TGTGAAGGCTTTTCAAAGCTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGC 514 Query 551 TGACGGCTACAATACAGGCACCGGACTCGCGGCAGAGATCATCGGAACATTCGTGCTTGT 610 ||||| ||||| || ||||| ||||| || |||||||||||||||||||||||||| || Sbjct 515 CGACGGTTACAACACTGGCACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCGT 574 Query 611 CTACACAGTCTTCTCCGCTACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGT 670 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 575 CTACACAGTCTTCTCCGCCACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGT 634 Query 671 TTTGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGAT 730 |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| Sbjct 635 GTTGGCGCCACTTCCGATTGGGTTTGCTGTGTTTATGGTACATTTGGCAACAATTCCGAT 694 Query 731 CACCGGAACCGGTATCAACCCGGCTAGGAG-TTTCGGAGCCGCCGTAATCTTTAACAAGA 789 |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||| Sbjct 695 CACCGGAACCGGTATCAACCCGGCTAGGAGCTTT-GGAGCTGCCGTAATCTTTAACGAGA 753 Query 790 GCAAGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTACGATAG 849 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 754 GCAAGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTGCAATAG 813 Query 850 CTGCATTTTATCACCAATTCGTTCTAAGGGCCTCAGGCTCCAAGTCCCTCGGTTCATTCA 909 ||||||||||||||||||| || || ||||| ||||| |||||||| ||||| || |||| Sbjct 814 CTGCATTTTATCACCAATTTGTCCTCAGGGCTTCAGGTTCCAAGTCACTCGGATCCTTCA 873 Query 910 GAAGTGCAGCCAACGTTTAAACTTA-GCCACGAAA 943 |||||||||||||||| | | ||| ||||| ||| Sbjct 874 GAAGTGCAGCCAACGTCTGAGTTTAAGCCACAAAA 908 > Ahg485715 jgi|Araly1|485715|fgenesh2_kg.5__1707__AT3G53420.1 Length=1272 Score = 891 bits (482), Expect = 0.0 Identities = 719/836 (86%), Gaps = 6/836 (1%) Strand=Plus/Plus Query 99 GGATTTCAGACGAGAGATTA-CGAAGATCCTCCGCCAACACCGTTT-TTCGACGCAGAGG 156 ||||||||||| ||||| || | | ||||| |||||| | |||||| || || | || || Sbjct 238 GGATTTCAGACAAGAGACTATC-ATGATCCGCCGCCAGCTCCGTTTATT-GATGGAGCGG 295 Query 157 AGCTTACCAAGTGGTCTTTATACAGAGCAGTCATCGCCGAGTTCGTAGCCACTCTCCTCT 216 |||| | ||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 296 AGCTAAAGAAGTGGTCTTTTTACAGAGCAGTCATCGCCGAGTTCGTAGCTACTCTCCTCT 355 Query 217 TCTTGTACGTCACCGTTTTAACTGTCATTGGTTACAAGATTCAGTCCGACACAAAAGCCG 276 |||| |||||||||||||| |||||||| |||||||||||||||||||| || || |||| Sbjct 356 TCTTATACGTCACCGTTTTGACTGTCATCGGTTACAAGATTCAGTCCGATACTAAGGCCG 415 Query 277 GTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGGCATCGCGTGGGCTTTTGGTGGCATGA 336 | || || ||||||||||| || |||||||| || ||||| ||||| |||||||| |||| Sbjct 416 GCGGGGTAGACTGCGGCGGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTATGA 475 Query 337 TCTTCATCCTTGTCTACTGCACCGCCGGTATCTCAGGTGGTCACATAAACCCTGCGGTGA 396 |||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct 476 TCTTCATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGA 535 Query 397 CGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGATTAGGGCGGTGCTT-TACATGGTG 455 | ||||| | ||||| || || || || ||| || |||||| | || ||||| ||| Sbjct 536 CATTTGGGCTATTCTTGGCACGTAAAGTGTCGTTGCCTAGGGCCAT-ATTGTACATTGTG 594 Query 456 GCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTGTGAAGGCATTTCAAAGCTCTCAC 515 ||||||||||||||||| |||||||||||||| ||||| || || || ||||||||| || Sbjct 595 GCTCAGTGTTTGGGTGCGATTTGTGGAGTTGGATTTGTCAAAGCCTTCCAAAGCTCTTAC 654 Query 516 TATGTTAATTACGGTGGAGGAGCCAACTTTCTAGCTGACGGCTACAATACAGGCACCGGA 575 |||| |||||| || |||||||||| ||| || || ||||||| ||||| ||||| Sbjct 655 TATGACCGTTACGGCGGTGGAGCCAACTCTCTTGCCGATGGCTACAGCACAGGGACCGGT 714 Query 576 CTCGCGGCAGAGATCATCGGAACATTCGTGCTTGTCTACACAGTCTTCTCCGCTACTGAT 635 || |||||||||||||| || || ||||| ||||||||||| |||||||| || ||||| Sbjct 715 CTAGCGGCAGAGATCATTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCTGCCACTGAC 774 Query 636 CCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTTTTGGCGCCACTTCCGATTGGGTTT 695 |||||||| | || |||||||||||||||||||| |||||||||||||| || || || Sbjct 775 CCCAAACGTAGTGCCAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCAATCGGATTC 834 Query 696 GCGGTGTTTATGGTACATTTGGCCACTATTCCGATCACCGGAACCGGTATCAACCCGGCT 755 |||||||| ||||||||||||||||| ||||| |||||||||||||| || |||||||| Sbjct 835 GCGGTGTTCATGGTACATTTGGCCACCATTCCCATCACCGGAACCGGAATTAACCCGGCA 894 Query 756 AGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGCAAGCCATGGGATGACCACTGGATA 815 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 895 AGGAGTTTCGGAGCTGCCGTAATCTTCAACAAGAGCAAGCCATGGGATGACCACTGGATA 954 Query 816 TTCTGGGTGGGACCATTCATTGGAGCTACGATAGCTGCATTTTATCACCAATTCGTTCTA 875 || ||||| |||||||||||||||||| ||||||||||||| || |||||||||||||| Sbjct 955 TTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCTGCATTCTACCACCAATTCGTTCTG 1014 Query 876 AGGGCCTCAGGCTCCAAGTCCCTCGGTTCATTCAGAAGTGCAGCCAACGTTTAAAC 931 ||||| ||||| || ||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 1015 AGGGCTTCAGGTTCTAAGTCTCTCGGATCTTTCAGAAGTGCTGCCAACGTCTAAAC 1070 > Ahg934366 jgi|Araly1|934366|scaffold_402354.1 Length=826 Score = 867 bits (469), Expect = 0.0 Identities = 541/577 (94%), Gaps = 0/577 (0%) Strand=Plus/Plus Query 373 GTGGTCACATAAACCCTGCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGA 432 |||||||||||||||| |||||||| || || |||||||| || |||||||| ||||||| Sbjct 250 GTGGTCACATAAACCCGGCGGTGACATTGGGATTGTTCTTGGCTCGGAAGGTGTCGCTGA 309 Query 433 TTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTG 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 TTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTG 369 Query 493 TGAAGGCATTTCAAAGCTCTCACTATGTTAATTACGGTGGAGGAGCCAACTTTCTAGCTG 552 ||||||| |||||||||||| |||| ||| |||||||||||||||||||| |||||| | Sbjct 370 TGAAGGCTTTTCAAAGCTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGCCG 429 Query 553 ACGGCTACAATACAGGCACCGGACTCGCGGCAGAGATCATCGGAACATTCGTGCTTGTCT 612 |||| ||||| |||||||| ||||| || |||||||||||||||||||||||||| |||| Sbjct 430 ACGGTTACAACACAGGCACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCGTCT 489 Query 613 ACACAGTCTTCTCCGCTACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTTT 672 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 490 ACACAGTCTTCTCCGCCACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTGT 549 Query 673 TGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCA 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 550 TGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCA 609 Query 733 CCGGAACCGGTATCAACCCGGCTAGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGCA 792 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 610 CCGGAACCGGTATCAACCCGGCCAGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGCA 669 Query 793 AGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTACGATAGCTG 852 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 670 AGCCATGGGATGACCACTGGATATTCTGGGTAGGACCATTCATTGGAGCTGCGATAGCTG 729 Query 853 CATTTTATCACCAATTCGTTCTAAGGGCCTCAGGCTCCAAGTCCCTCGGTTCATTCAGAA 912 |||||||||||||||| || || ||||||||||| |||||||| |||||||| ||||||| Sbjct 730 CATTTTATCACCAATTTGTCCTCAGGGCCTCAGGTTCCAAGTCACTCGGTTCCTTCAGAA 789 Query 913 GTGCAGCCAACGTTTAAACTTAGCCACGAAAGaaaaa 949 ||||||| ||||||| |||||||||| ||| ||||| Sbjct 790 GTGCAGCAAACGTTTGAACTTAGCCATAAAACAAAAA 826 Score = 315 bits (170), Expect = 6e-85 Identities = 192/203 (95%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 52 AGAAACATCCATTAACACATATGGCTAAAGACGTGGAAGGACCTGATGGATTTCAGACGA 111 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1 AGAAACATCCATTAACACATATGGCGAAAGACGTGGAAGGACCTGAGGGATTTCAGACGA 60 Query 112 GAGATTACGAAGATCCTCCGCCAACACCGTTTTTCGACGCAGAGGAGCTTACCAAGTGGT 171 | || ||||||||||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 61 GGGACTACGAAGATCCTCCGCCTACTCCGTTTTTCGACGCGGAGGAGCTTACCAAGTGGT 120 Query 172 CTTTATACAGAGCAGTCATCGCCGAGTTCGTAGCCACTCTCCTCTTCTTGTACGTCACCG 231 |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 121 CTTTGTACAGAGCAGTCATCGCCGAGTTCGTAGCTACTCTCCTCTTCTTATACGTCACCG 180 Query 232 TTTTAACTGTCATTGGTTACAAG 254 ||||||||||||| ||||||||| Sbjct 181 TTTTAACTGTCATCGGTTACAAG 203 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42773912874 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5