BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37240.1 Length=1086 Score E Sequences producing significant alignments: (Bits) Value Ahg482716 jgi|Araly1|482716|fgenesh2_kg.4__1776__AT2G37240.1 1282 0.0 Ahg321431 jgi|Araly1|321431|fgenesh1_pm.C_scaffold_4001488 58.4 1e-07 > Ahg482716 jgi|Araly1|482716|fgenesh2_kg.4__1776__AT2G37240.1 Length=994 Score = 1282 bits (694), Expect = 0.0 Identities = 904/1001 (90%), Gaps = 32/1001 (3%) Strand=Plus/Plus Query 33 TGGAAGCAACAATGGCGATTGCTCTCTCGTCGTCGTCGACGATCACGTCCATTACTCTGC 92 ||||||||||||||||| || |||| ||||||||| ||||||| ||| |||| ||||||| Sbjct 17 TGGAAGCAACAATGGCGGTTTCTCTGTCGTCGTCGACGACGATAACGCCCATAACTCTGC 76 Query 93 AGCCGAAGCTGAAGACGATTCATGGATTAGGGACAGTACT-TCCTGGTTATTCGGTCAAA 151 ||||||| |||||||||||||||||||||||||||||| | |||| ||||||| ||||| Sbjct 77 AGCCGAATCTGAAGACGATTCATGGATTAGGGACAGTA-TCTCCTTTTTATTCGATCAAA 135 Query 152 TCTCACTTTCGTAGTGTCTCTCTCCGGCGTAGCGCCGTGGTCGTGTCGGCCATTACCGGA 211 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 136 TCTCGCTTTCGTAGTGTCTCTCTCCGACGTAGCGCCGTGGTCGTGTCGGCCATTACCGGA 195 Query 212 GCTTCTTCCGGAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTG-AAAGT 270 | |||| ||| ||||||| ||||||| ||| |||| || | ||||||||||| ||| | Sbjct 196 GGAGCTTCAGGAACTGGAATTGGGAAAGATACTGCTGCTTTGTTAGATACAGTGAAAATT 255 Query 271 CTTGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAGGAAGGCCGT 330 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 256 C-TGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAGGAAGGCTGT 314 Query 331 TGTTGCATTTGCTCGTCATTTTGGATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGC 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 315 TGTTGCATTTGCTCGTCATTTTGGATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGC 374 Query 391 AGAAAAGAAGGATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAG 450 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 375 AGAAAAGAAGGATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTTATTGGACCGGGAAG 434 Query 451 CATCGATCAGGCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGAGGTCTATGCGGA 510 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 435 TATTGATCAGGCTAACACTTTTGTGGAACAGACTAAGTTTAAAGGAGAGGTCTATGCAGA 494 Query 511 TCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTAC 570 |||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||| Sbjct 495 TCCAAACCACGCATCATACGAGGCGCTTGAATTTGTTTCAGGGGTTACTGTGACATTTAC 554 Query 571 ACCCAAAGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGAA 630 |||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 555 CCCCAAAGCCGCTCTGAAGATATTGGAGTCTTACATGGAAGGATACCGCCAAGACTGGAA 614 Query 631 ACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGGCAACAAGGCGGAATCTTAGT 690 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 615 ACTCTCGTTTATGAAAGATACAGTAGAAAGAGGCGGCTGGCAACAAGGCGGAATCCTAGT 674 Query 691 TGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGGACAAAGAAGCCGGTGATGA 750 |||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 675 TGCTGGCCCTGGAAAAGATAACATCTCTTACATACGCAAGGACAAAGAAGCTGGTGATGA 734 Query 751 CCCGCCTGTTGAAGAGATCCTTAAAGCGTGTTGTGCTTGAAGAGTTGAAAGAATCGCAAT 810 ||||||||||||||||||||| ||||||||||| |||||||| | || ||||||| Sbjct 735 CCCGCCTGTTGAAGAGATCCTAAAAGCGTGTTGCGCTTGAAG-G---AA----TCGCAAT 786 Query 811 CGAAAAATAGATATTTAAAAAACAGTAACGACACTGCTATGCCCGGATACTCAACT-AAA 869 |||||| ||||| |||||||||||||||| || |||| ||||||| |||||| || ||| Sbjct 787 CGAAAAGTAGAT-TTTAAAAAACAGTAAC-ACTGTGCTTTGCCCGG-TACTCATCTTAAA 843 Query 870 TCCATAAAACACCATTACCACAATCACAACGACCACATTTGATATATA-G---GTAGGGA 925 |||||||||||||||||||| || || |||||||||||| |||| ||| | ||||||| Sbjct 844 TCCATAAAACACCATTACCATAACCATAACGACCACATTAGATAAATATGTACGTAGGGA 903 Query 926 AAGaaaaaaaGACAAGTCGTAGACCGAAAG-TAATGATCATTGT-TTCTTGATTTTTGAT 983 ||||||||| ||||||| ||||||||||| ||| | || | ||||||||||||||| Sbjct 904 AAGAAAAAA-GACAAGTGGTAGACCGAAAAATAAAAAG-AT-GCCTTCTTGATTTTTGAT 960 Query 984 GATCATTATGACTTATGAGTCGAGATCAGCGAAGGATAAGT 1024 ||||||||||| | ||||||||||| |||||||||| Sbjct 961 GATCATTATGA-----G--TCGAGATCAGCCAAGGATAAGT 994 > Ahg321431 jgi|Araly1|321431|fgenesh1_pm.C_scaffold_4001488 Length=699 Score = 58.4 bits (31), Expect = 1e-07 Identities = 38/41 (93%), Gaps = 1/41 (2%) Strand=Plus/Minus Query 996 TTATGAGTCGAGATCAGCGAAGGATAAGTGT-GGCCCTTGC 1035 |||||||||||||||||||||||||||||| || |||||| Sbjct 699 TTATGAGTCGAGATCAGCGAAGGATAAGTGGCGGACCTTGC 659 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40448414937 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5