BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37460.1
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901619 jgi|Araly1|901619|Al_scaffold_0004_2269 1186 0.0
> Ahg901619 jgi|Araly1|901619|Al_scaffold_0004_2269
Length=1020
Score = 1186 bits (642), Expect = 0.0
Identities = 718/754 (95%), Gaps = 7/754 (1%)
Strand=Plus/Plus
Query 478 AGTAAAGCTACGGTGCATTAGGAGCACGGGTAAGGTGGTTGGAACATTGGCTACTGTTGG 537
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 274 AGT-AAGCTACGGTGCATTAGGAGCGCGGGTAAGGTGGTTGGGACATTGGCTACTGTTGG 332
Query 538 AGGAGCCATGATCATGACACTTGTCAAAGGCCCAGTTCTCGATCTGTTTTGGACCAAAGG 597
||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||
Sbjct 333 AGGAGCCATGATCATGACACTTGTCAAAGGCCCAGTTGTTGACCTCTTTTGGACCAAAGG 392
Query 598 AGTCTCTGCACATAACACAGCTGGGACCGACATTCATAGCGCCATCAAAGGCGCAGTATT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 AGTCTCTGCACATAACACAGCTGGGACCGACATTCATAGCGCCATCAAAGGCGCAGTATT 452
Query 658 GGTCACGATTGGTTGTTTTAGCTATGCATGTTTCATGATTCTCCAAGCGATAACATTAAG 717
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 453 GGTCACCATTGGTTGTTTCAGCTATGCATGTTTCATGATTCTACAAGCGATAACATTAAG 512
Query 718 GACTTACCCTGCTGAGCTCTCTCTCACAGCATGGATATGTCTTATGGGGACAATAGAAGG 777
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 513 AACTTACCCCGCTGAGCTCTCTCTCACAGCATGGATATGCCTAATGGGGACAATAGAAGG 572
Query 778 AACCGCCGTGGCATTAGTGATGGAGAAAGGAAATCCCAGCGCATGGGCCATTGGTTGGGA 837
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 573 AACCGCCGTGGCATTAGTGATGGAGAAAGGAAATCCCGGTGCTTGGGCCATTGGTTGGGA 632
Query 838 CACTAAACTTCTTACAGCCACCTATAGTGGGATAGTGTGCTCAGCATTGGCTTACTACGT 897
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 633 CACTAAACTTCTTACAGCCACCTATAGCGGGATAGTGTGCTCAGCATTGGCTTACTACGT 692
Query 898 TGGAGGAGTGGTGATGAAAACCAGAGGTCCTGTGTTTGTGACAGCTTTCAGTCCTCTTTG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TGGAGGAGTGGTGATGAAAACCAGAGGTCCTGTGTTTGTGACAGCTTTCAGTCCTCTTTG 752
Query 958 TATGATCATAGTAGCGATTATGTCGACCATCATCTTTGCTGAGCAAATGTACCTTGGAAG 1017
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 753 TATGATCATAGTAGCGATTATGTCGACCATCATCTTTGCTGAGCAGATGTACCTTGGAAG 812
Query 1018 GGTTCTTGGTGCTGTAGTTATATGTGCAGGATTATACCTTGTGATATGGGGCAAAGGAAA 1077
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 813 GGTCCTTGGTGCGGTAGTTATATGTGCAGGATTATACCTTGTGATATGGGGCAAAGGCAA 872
Query 1078 AGATTACAAATATAATTCCACGCTGCAATTAGATGACGAATCAGCACAACCAAAGCTAGA 1137
|||||||||| || |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 873 AGATTACAAACATCATTCCACGCTGCAAATAGATGATGAATCAGCACAACCAAAGCTAGA 932
Query 1138 ACTAAGCGGAAACGGGAAGGATAATGTTGATCATGAAGTCATTACTATAAGCAAGCAAGG 1197
||||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 933 ACTAAGCGG----G--AAGGATAATGTTGATCATGAAGTCATTACTATTAGCAAGCAAGG 986
Query 1198 AGAACAAAGAAGAACAGCTGTAGAAACAGTCTAA 1231
||||||||||||||||| | |||| |||||||||
Sbjct 987 AGAACAAAGAAGAACAGTTATAGAGACAGTCTAA 1020
Score = 357 bits (193), Expect = 1e-97
Identities = 201/205 (98%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 89 ATGGAGGAAGTAAAGAAGAGGGATTGTATGGAGAAGGCAAGGCCATTCATTTCAATGGTA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGGAAGTAAAGAAGAGGGATTGTATGGAGAAGGCAAGGCCATTCATTTCTATGGTA 60
Query 149 GTGTTGCAAGTAGGGCTAGCAGGAATGGATATTCTCTCAAAGGCTGTTCTAAACAAAGGC 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGTTGCAAGTAGGGCTAGCAGGAATGGATATTCTCTCAAAGGCTGTTCTAAACAAAGGC 120
Query 209 ATGAGCAATTACGTCCTTGTTGTTTACCGTCACGCCGTTGCAACCATCGTTATGGCCCCG 268
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 ATGAGCAATTACGTTCTTGTTGTTTACCGTCACGCCGTTGCAACTGTCGTTATGGCCCCG 180
Query 269 TTCGCCTTCTATTTCGACAAGAAGG 293
|||||||||||||||||||||||||
Sbjct 181 TTCGCCTTCTATTTCGACAAGAAGG 205
Score = 115 bits (62), Expect = 9e-25
Identities = 62/62 (100%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 352 GCCAGTGATCGACCAGAACTTATACTATCTCGGGATGAAATATACGACAGCTACATTTGC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 GCCAGTGATCGACCAGAACTTATACTATCTCGGGATGAAATATACGACAGCTACATTTGC 264
Query 412 AA 413
||
Sbjct 265 AA 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54240508880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5