BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37478.1 Length=1455 Score E Sequences producing significant alignments: (Bits) Value Ahg934405 jgi|Araly1|934405|scaffold_402393.1 920 0.0 Ahg345481 jgi|Araly1|345481|fgenesh1_pg.C_scaffold_4001823 806 0.0 Ahg934404 jgi|Araly1|934404|scaffold_402392.1 283 2e-75 Ahg485755 jgi|Araly1|485755|fgenesh2_kg.5__1747__AT3G53670.1 152 7e-36 > Ahg934405 jgi|Araly1|934405|scaffold_402393.1 Length=619 Score = 920 bits (498), Expect = 0.0 Identities = 588/629 (93%), Gaps = 16/629 (3%) Strand=Plus/Plus Query 582 CCTTGTACTGTTAGTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCAAAGATGCAG 641 |||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 CCTTCTGCTGTTACTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCCAAGATGCAG 60 Query 642 ACTTTGACATCTCTACTTCGAGTCCCACACAATGTTCTAAAGGCTCGGAGCATACCTCGT 701 ||||||||| | | ||||||||||| |||||||||||||||||| |||||||||||| Sbjct 61 ACTTTGACA----T-C-TCGAGTCCCACGCAATGTTCTAAAGGCTCGAAGCATACCTCGT 114 Query 702 TTACTGGC-TCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 760 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 TTACT-GCATCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 173 Query 761 ACTGTGAATGATGAAACCGCTGTTCAGGATTTCGGCAAAT-CTGTTTTAAGTCCTAACTC 819 |||| |||||| |||||||||| ||||||||||||||||| | ||||||||| ||||| Sbjct 174 ACTGCGAATGAAGAAACCGCTGATCAGGATTTCGGCAAATAC-ACTTTAAGTCCCAACTC 232 Query 820 TTCT-GATGATGAAGACAAGGATGAGAACCTTATGACTCAGACACCAATTGTTCTTATCC 878 || | |||||||||||||||||||||||||||| |||||| |||||||||||||| |||| Sbjct 233 TT-TGGATGATGAAGACAAGGATGAGAACCTTACGACTCAAACACCAATTGTTCTCATCC 291 Query 879 CAGCCATAAAAGGCAGTCGAGAGAAGTATGGCTTGTCACTGAGGAAGTCGAGTGTTTCAT 938 |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| Sbjct 292 CAGCCATAAAAGGCAGCCGAGAGAAGCATGGCTTGTCACTGAGGAAGTCTAGTGTTTCAT 351 Query 939 GGGGGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 998 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 GGGCGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 411 Query 999 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 1058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 471 Query 1059 AGAAGT-CTAAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 1117 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 AGAAGAGC-AAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 530 Query 1118 TCTCGCAAACACAGTCGAGACAAATTTGATTGGGTAACTCAGATGCCTATAGTTGCAGCA 1177 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 531 TCTCGCAAACACAGTCGAGACAAATTTGAATGGGTAACTCAGATGCCTATAGTTGCAGCT 590 Query 1178 TCTTCATGAATG--AGTGGCTGCTAGTAA 1204 ||||| | |||| | ||||||||||||| Sbjct 591 TCTTCTTAAATGGCATTGGCTGCTAGTAA 619 > Ahg345481 jgi|Araly1|345481|fgenesh1_pg.C_scaffold_4001823 Length=576 Score = 806 bits (436), Expect = 0.0 Identities = 540/588 (92%), Gaps = 15/588 (3%) Strand=Plus/Plus Query 602 ATGAGCTCTGTTTGTGGTAAGTTGGATTTCAAAGATGCAGACTTTGACATCTCTACTTCG 661 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 1 ATGAGCTCTGTTTGTGGTAAGTTGGATTACAAAGATGCAGACTTTGACATCTCCACTTCG 60 Query 662 AGTCCCACACAATGTTCTAAAGGCTCGGAGCATACCTCGTTTACTGGCTCTGAAGATTCT 721 ||| |||| |||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 61 AGTGCCACGCAATGTTCTAAAGGCTCGAAGAATACCTCGTTTACTGGCTCTGAAGATTCT 120 Query 722 CAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCAACTGTGAATGATGAAACCGCT 781 ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| Sbjct 121 CAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCAACTGCGAATGAAGGTACCGCT 180 Query 782 GTTCAGGATTTCGGCAAATCTGTTTTAAGTCCTAACTCTTCTGATGATGAAGACAAGGAT 841 | |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 181 GATCAGGATTTCGGCAAATCCACTTTAAGTCCTAACTCTTCAGATGATGAAGACAAGGAT 240 Query 842 GAGAACCTTATGACTCAGACACCAATTGTTCTTATCCCAGCCATAAAAGGCAGTCGAGAG 901 ||||| |||| |||| |||||| ||||||| |||||||||||||||||||| |||||| Sbjct 241 GAGAATCTTAAGACT---ACACCAGTTGTTCTCATCCCAGCCATAAAAGGCAGCCGAGAG 297 Query 902 AAGTATGGCTTGTCACTGAGGAAGTCGAGTGTTTCATGGGGGGCTGATGTGTATGATCCT 961 ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 298 AAGCATGGCTTGTCACTGAGGAAGTTGAGTGTTTCATGGGCGGCTGATGTGTATGATCCT 357 Query 962 CCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCAAGAAACAGC-AGCAGAAATCCAA 1020 |||||||||||||||| | | || |||||||||||||||||| | | |||||||| || Sbjct 358 CCTCCCTCGATAGCCT--C-C-CA--CACAAGAAGCAAGAAACAACTA-CAGAAATCAAA 410 Query 1021 GAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGACAGAAG-TCTAAAGACAACTCTT 1079 |||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||| Sbjct 411 GAGCAAAGACAATCACAGGAAGACCGGAAAGAAAGGACAGAAGAGC-AAAGACAACTCTT 469 Query 1080 CCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCTTCTCGCAAACACAGTCGAGACA 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||| || || | Sbjct 470 CCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCTTCTCGCAAACACAGCCGCGAAA 529 Query 1140 AATTTGATTGGGTAACTCAGATGCC-TATAGTTGCAGCATCTTCATGA 1186 ||||||| ||||||||||||||||| | |||||||||||||||| ||| Sbjct 530 AATTTGAATGGGTAACTCAGATGCCGT-TAGTTGCAGCATCTTCTTGA 576 > Ahg934404 jgi|Araly1|934404|scaffold_402392.1 Length=538 Score = 283 bits (153), Expect = 2e-75 Identities = 169/176 (96%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 274 GGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTCTTCCTCTCCTG 333 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 366 GGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTC-T--TCTCCTT 422 Query 334 TCTTTGATTCCTTCGTTGACTCCTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCT 393 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 423 TCTTTGATTCCTTCGTTGACTCCGTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCT 482 Query 394 CTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAACAtttcctttccttcttctc 449 |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 483 CTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAACATTTCGTTTCCTTCTCCTC 538 > Ahg485755 jgi|Araly1|485755|fgenesh2_kg.5__1747__AT3G53670.1 Length=1202 Score = 152 bits (82), Expect = 7e-36 Identities = 134/158 (85%), Gaps = 8/158 (5%) Strand=Plus/Plus Query 272 AGGGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTCTTCCTCTCC 331 ||||| |||||||| || ||| || |||| | |||| ||||| || | | |||| | | Sbjct 218 AGGGTATCGAAGAGGAT-AGAGAA-AATG-C--GGGTGTCCTCTGAGATAC-TCCT-T-C 269 Query 332 TGTCTTTGATTCCTTCGTTGACTCCTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 391 | |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 270 TTTCTTTGGTTCCGGCGTTGACTTTTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 329 Query 392 CTCTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAA 429 ||||| ||||| |||||||||||||||||||||||||| Sbjct 330 CTCTTCAAAAGAGTGATTGGCGTGGTAATCTTAGTTAA 367 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54430960105 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5