BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37540.1 Length=1240 Score E Sequences producing significant alignments: (Bits) Value Ahg934410 jgi|Araly1|934410|scaffold_402398.1 1652 0.0 > Ahg934410 jgi|Araly1|934410|scaffold_402398.1 Length=1011 Score = 1652 bits (894), Expect = 0.0 Identities = 969/1006 (96%), Gaps = 1/1006 (0%) Strand=Plus/Plus Query 125 agagagagagagagagagagaTCATGGGAATATATGGAGTGATGACAGGGAAAAAAGGAA 184 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 AGAGAGAGAGAGATAGAGAGATCATGGGACTATATGGAGTGATGACAGGGAAAAAAGGAA 62 Query 185 AGAGTGGGTTTGGATCTGCTTCTACTGCTGAAGATGTTACTCAAGCCATTGATGCCAGTC 244 ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 63 AGAGTGGATTTGGATCTGCTTCTACTGCTGAAGATGTTACTCACTCTATTGATGCCAGTC 122 Query 245 ATCTCACTGCCATCATCACAGGTGGAACAAGTGGGATTGGATTGGAGGCAGCTAGAGTGT 304 ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 123 ATCTCACTGCCATTATCACAGGTGGAACAGGTGGGATTGGATTGGAGGCAGCAAGAGTGT 182 Query 305 TAGCAATGAGAGGAGCTCATGTCATCATTGCCGCAAGAAACCCAAAAGCTGCTAATGAGT 364 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 183 TAGCAATGAGAGGAGCTCATGTCATCATTGCCGCAAGAAACACAAAAGCTGCTAATGAAT 242 Query 365 CTAAAGAGATGATTCTTCAGATGAACCCTAATGCTCGCGTCGACTATCTCCAGATCGATG 424 |||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||||| Sbjct 243 CTAAAGAGATGATTCTTCAGATGAACCCTAATGCTCGCGTAGAGTATATCCAGCTCGATG 302 Query 425 TCTCTTCCATCAAATCAGTCAGATCCTTCGTTGATCAGTTTCTTGCCCTTAATGTTCCTC 484 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 303 TCTCTTCCATCAAATCAGTCAGATCCTTCGTCGATCAGTTTCTTGCCCTTAATGTTCCTC 362 Query 485 TCAACATTCTCATAAACAATGCAGGTGTTATGTTTTGTCCTTTCAAGCTCACCGAAGATG 544 ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 363 TCAACATACTCATAAACAATGCAGGTGTTATGTTTTGTCCTTTCAAGCTCAGTGAAGATG 422 Query 545 GGATTGAATCACAATTCGCAACAAACCACATTGGTCATTTTCTGTTGACGAATCTGCTTC 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 GGATTGAATCACAATTCGCAACAAACCACATTGGTCATTTTCTGTTGACGAATCTGCTTC 482 Query 605 TGGACAAAATGAAAAGTACCGCAAGAGAAAGTGGAGTCCAAGGAAGGATTGTGAATCTGT 664 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 483 TGGACAAAATGAAGAGTACCGCAAGAGAAAGTGGAGTCCAAGGAAGGATTGTGAATTTGT 542 Query 665 CATCTATTGCTCATACTTATACTTACTCTGAAGGTATCAAGTTCCAAGGCATCAATGACC 724 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 543 CATCTATTGCTCATACTTATACTTACCCTGAAGGTATCAAGTTCCAAGGCATCAATGACC 602 Query 725 CTGCTGGATATTCGGAGAGAAGGGCTTATGGACAGTCCAAACTCTCAAACTTGTTGCACT 784 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 603 CTGATGGATATTCGGAGAGAAGGGCTTATGGGCAGTCCAAACTCTCAAACTTGTTGCACT 662 Query 785 CCAATGCACTCTCTCGTAGACTACAGGAAGAAGGTGTGAACATCACTATAAATTCGGTGC 844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 CCAATGCACTCTCTCGTAGACTACAGGAAGAAGGTGTGAACATCACTATAAATTCGGTGC 722 Query 845 ACCCTGGTCTTGTCACCACTAATCTCTTTCGCTACTCCGGTTTTAGCATGAAGGTCTTCA 904 ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 723 ACCCTGGACTTGTCACCACTAATCTCTTTCGCCACTCCGGTTTTAGCATGAAGGTCTTCA 782 Query 905 GGGCTATGACTTTCCTCTTTTGGAAAAATATACCTCAGGGAGCAGCAACAACATGCTACG 964 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 783 AGGCTATGACTTTCCTCTTATGGAAAAATATTCCTCAGGGAGCAGCAACAACATGCTACG 842 Query 965 TTGCACTTCATCCAGATCTCGAAGGCGTCACCGGAAAGTATTTCGGCGACTGTAACATCG 1024 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 843 TTGCACTTCATCCTGATCTCGAAGGCGTCACCGGAAAGTATTTCGGCGACTGTAACATCG 902 Query 1025 TTGCTCCGAGCAAATTTGCTACCAACAATTCTCTCGCCGATAAACTTTGGGATTTCAGTG 1084 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 903 TTACTCCGAGCAAATTTGCTACCAACAATTCTCTCGCCGATAAACTTTGGGATTTCAGTG 962 Query 1085 TCTTTCTCATCGATTCTATCTCTAAATAA-TCTATCATCATCAAGA 1129 || |||||||||||| ||||||||||| | |||||||||||||| Sbjct 963 TCAAACTCATCGATTCTGTCTCTAAATAAATTTATCATCATCAAGA 1008 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46319344155 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5