BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37570.1
Length=2074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482753 jgi|Araly1|482753|fgenesh2_kg.4__1813__AT2G37570.1 3075 0.0
> Ahg482753 jgi|Araly1|482753|fgenesh2_kg.4__1813__AT2G37570.1
Length=2042
Score = 3075 bits (1665), Expect = 0.0
Identities = 1952/2083 (94%), Gaps = 50/2083 (2%)
Strand=Plus/Plus
Query 1 GAGGAAGAAGAAGAAAAATCAAGATTTGTTGTGTTGGCGAAGCCACAGAGACTGAGTAAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 1 GAGGAAGAAGAAGAAAAATCAAGATTTGTTGTGTTGGCGAATCCACAGAGACT--G--AT 56
Query 61 CGATTCGATTTTGTTTGCTAATGATGATGACGATACCATCTGCATCGTGCTCATCTTAGC 120
| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 C----C-ATTTTGGTTGCTAATGATGATGACGATACCATCTGCATCGTGCTCATCTTAGC 111
Query 121 TTTCTCCTCTTTCTGGGTTTATCTGTGCTTAAGGCaaaaaaaGAGTGCTCCTTTTTTCAT 180
|| ||||||||||||||||||||| || | || ||||| |||
Sbjct 112 TTCCTCCTCTTTCTGGGTTTATCT---CT-----C------------CT--TTTTT-CAT 148
Query 181 ATCTTCTTCAAAGTTTCGtttttttt-tGGTGTTTATTAGAATCT-A-GAAGTTAACAAT 237
|||||||||||||||||| ||||| | || ||||||| || || | | || ||||||||
Sbjct 149 ATCTTCTTCAAAGTTTCGATTTTTGTGTG-TGTTTAT-AGGATTTCATGAT-TTAACAAT 205
Query 238 TGGAGAATTTGGAATTGGGAAAATAGGGGTTAGATATATCTGTAAGTGGTTTGGTTCTT- 296
|||| | ||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 206 TGGATCAGACCCAATCACCAAAATAGGGGTTAGATATATCTGTAAGTAGTTTGGTTCTTT 265
Query 297 CTTAGCAAGTGTTTAACTTTGGGAGAGGAAGATGAGAATTACAAGTGTTGTTATGGTTAT 356
|| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 266 CT-AGCAATTGTTTAACTTTGGGAGAGGAAGATGAGAATTTCAAGTGTTGTTATGGTTAT 324
Query 357 TGGCTATGAGACTTGTCTCTGGTGTGAGCTGAGATGGTGGTAGATACTTTGTTTTAACGT 416
|||||||||||||||||||||||||||||||| |||||| |||||||||||||| | |||
Sbjct 325 TGGCTATGAGACTTGTCTCTGGTGTGAGCTGAAATGGTGTTAGATACTTTGTTTGA-CGT 383
Query 417 CTTGGCTATGGAGAATCATCATCCTTCTACTCTATTGTCTATGGATTCAAGTGCTTCTTC 476
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 384 CTTGGTTATGGAGAATCATCATCCTTCTACTCTCTTGTCTATGGATTCAAGTGCTTCTTC 443
Query 477 TCATGAGGAGCTTGATTTGGAGATGAATAA---CAACAGGCAATCTCTGCTCTCTGGCCC 533
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 444 TCATGAGGAGCTTGATTTGGAGATGAATAATAACAACAGGCAATCTCTGCTCTCTGGCCC 503
Query 534 TCCTGATATCAATTTACCTCTCTCAGCTGAGAGAAGTCCTCCTCCTCCGCCGTGGAATTT 593
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 504 TCCTGATATCAATTTACCTCTCTCAGCTGAGAGAAGTCCTCCTCCTCAGCCTTGGAATTT 563
Query 594 AGATGCTTGTGATATTTTGGATGTTGGGTTAGGTTCACAAGCTTATGAGACTGAGAATTA 653
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 GGATGTTTGTGACATTTTGGATGTTGGGTTAGGTTCACAAGCTTATGAGACTGAGAATTA 623
Query 654 CATGAGTGTTGTACCTAAGGTTGGGAGGAAATGTGCTAAACGTGTTGATAGTATCTGGGG 713
|||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 624 CATGAGTGTTGTGCCTAAGGTTGGGAGGAAATGTGCTAAACGTGTTGATAGTGTATGGGG 683
Query 714 TGCTTGGTTTTTCTTCAGTTTCTACTTCAAGCCTGCGTTAAACGAGAAATCAAAGGCGAA 773
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TGCTTGGTTTTTCTTTAGTTTCTACTTCAAGCCTGCGTTAAACGAGAAATCAAAGGCGAA 743
Query 774 AATCGTCCGGGATAGTAATGGGATATCTGGTTTTGACAAGTCGGATTTGAAGCTTGATGT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 AATCGTCCGGGATAGTAATGGGATATCTGGTTTTGACAAGTCGGATTTGAAGCTTGATGT 803
Query 834 GTTTTTAGTTCAGCATGATATGGAGAATATGTATATGTGGGTGTTTAAGGAAAGACCTGA 893
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 GTTTCTAGTTCAGCATGATATGGAGAATATGTATATGTGGGTGTTTAAGGAAAGACCTGA 863
Query 894 GAATGCACTAGGGAAGATGCAGTTGAGGAGTTACATGAATGGTCATTCTAGACAAGGGGA 953
||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 864 GAATGCACTTGGGAAGATGCAGTTGAGGAGTTACATGAACGGGCATTCGAGACAAGGGGA 923
Query 954 TCGTTTGTTTCCATTTAGTGTTGAGAAAGGGTTTGTTAGGTCTCACAGAATGCAGAGGAA 1013
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 924 TCGTTTGTTTCCATTTAGTGTTGAGAAAGGTTTTGTTAGGTCTCATAGAATGCAGAGGAA 983
Query 1014 ACACTACAGAGGTTTGTCGAATCCGCAGTGCGTTCATGGGATTGAGCTTGTTCCTTTGCC 1073
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 984 ACACTACAGAGGTTTGTCAAATCCGCAGTGTGTTCATGGGATTGAGCTTGTTCCTTTGCC 1043
Query 1074 AAACCTCACGTGTCTAGATGAAGAAGAGAGGAAAAGGTGGATGGAGCTTACGGGTCGTGA 1133
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1044 AAACCTCACGTGTCTAGATGAGGAAGAGAGGAAAAGGTGGATGGAGCTTACGGGTCGCGA 1103
Query 1134 TTTGAATTTCACCATTCCACCTGAAGCTAGTGACTTTGGTTCTTGGAGAAACCTTCCCAA 1193
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1104 TTTGAATTTCACCATTCCACCTGAAGCTAGCGACTTTGGTTCGTGGAGAAACCTCCCCAA 1163
Query 1194 CACTGACTTTGAGCTTGAGAGGCCTACACCTTCTTTGAAGAATCCTACTGCAAACCACTC 1253
|||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||||
Sbjct 1164 CACTGACTTTGAGCTTGAGAGGCCTACACCTT-T--GAAGAATCCTACTCCAAGCCACTC 1220
Query 1254 TAAGAAACTACTCAATGGCTCGGGGCTCAATCTCTCGACTCAACCATCCAACCATTCTAA 1313
||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1221 TAAGAAATTACTCAATGGATCGGGGCTCAATCTCTCAACTCAACCATCCAACCATTCTAA 1280
Query 1314 TGGTGAAGCAACCGATTTATCTCCTTCGAGCCACAAGAAGAGGAAGGACTTGTTCTCAAA 1373
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 TGGTGAAGCAACTGATTTATCTCCTTCGAGCCACAAGAAGAGGAAGGACTTGTTCTCAAA 1340
Query 1374 TGGGATTCATGAGGAGGAGTGTTGCTTAACTGTAAACCCACAACCTCCTGTTATCGAAGC 1433
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1341 TGGGATTCATGAGGAGGAGTGTTGCTTAACCGTAAACCCACCACCTCCTGTTATCGAAGC 1400
Query 1434 TCACCAGAATGAGCTACCTACTTGGTCAAACGAGTTTA-CTGGGGCCATGAAAAACGTTT 1492
|||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||
Sbjct 1401 TCACCAGAATGAGCTACCAACTTGGTCAAACGAGTTTAGC-GGCGCCATGAAAAACGTTT 1459
Query 1493 ATGGACCTGTTACTGCTGCAAAAACGATCTATGAGGACGAAGAAGGCTACTTGATCATAA 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 ATGGACCTGTTACTGCTGCAAAAACGATCTATGAGGACGAAGAAGGCTACTTGATCATAA 1519
Query 1553 TCAGCCTTCCTTTTGTGGATTTGAACAGCGTTAAAGTCTCCTGGAGGAACACTCTCACAC 1612
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1520 TCAGCCTTCCTTTTGTGGATTTGAACAGCGTTAAAGTCTCGTGGAGGAACACTCTCACAC 1579
Query 1613 ATGGAATCATAAAAGTTTCATGCCTCAGCACATCGCGCGTACCTTTCATAAAGAGACATG 1672
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1580 ACGGAATCATAAAAGTTTCATGCCTCAGCACATCGCGCATACCTTTCATAAAGAGACATG 1639
Query 1673 ATAGAACATTCAAGTTGACTGATTCAGCCTCTGAGCATTGCCCGCCAGGTGAATTTGTCA 1732
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1640 ATAGAACATTCAAGTTGACTGATTCAGCCTCCGAGCATTGCCCGCCAGGTGAATTTGTCA 1699
Query 1733 GAGAGATCCCATTATCAAACCGAATCCCGGAAGATGCAAACATTGAAGCGTATTACGATG 1792
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1700 GAGAGATCCCGTTATCAACCCGAATCCCGGAAGATGCAAACATTGAAGCGTATTATGATG 1759
Query 1793 GACCTGGATCAGTTCTTGAGATACTTGTCCCAAAACTAAGAGCTGGCCCGGAAGAGCACG 1852
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1760 GACCTGGATCAGTTCTTGAGATACTTGTCCCGAAACTAAGAGCTGGCCCGGAAGAGCACG 1819
Query 1853 AGGTGCGGGTGTGTCTCCGTCCCAACCTCGGTGGAAACGATCTTATGCTGACTTAAAAAG 1912
|||||||||||||||||||||| || ||| | |||||||||||||||||||||||| |||
Sbjct 1820 AGGTGCGGGTGTGTCTCCGTCCTAATCTCAGCGGAAACGATCTTATGCTGACTTAAGAAG 1879
Query 1913 AGAAACAACTGTTTAGTTTTCTTGTTTGTAGAAGCTTATTATAGGAGTCATCTCTCATTG 1972
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 AGAAACATTTGTTTAGTTTTCTTGTTTGTAGAAGCTTATTATAGGAGTCATCTCTCATTG 1939
Query 1973 ATATTGGCCACTCATATATAGGCGTTTTCACTGTTTTAATGGGATTTTTCA-CACATTGC 2031
||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 1940 ATACTGGCCACTCATATATAGCCGTTTTCACTGTTTTAATGGGATTTTTCATCACAATGC 1999
Query 2032 AATCTTGTGTACGTTGTGTTGGAATCAACCCTATCCATAGATT 2074
| |||||| |||||||||||||||||||||||| |||||||||
Sbjct 2000 AGTCTTGTTTACGTTGTGTTGGAATCAACCCTACCCATAGATT 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78008821760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5