BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37760.2
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934469 jgi|Araly1|934469|scaffold_402457.1 1550 0.0
> Ahg934469 jgi|Araly1|934469|scaffold_402457.1
Length=976
Score = 1550 bits (839), Expect = 0.0
Identities = 924/966 (96%), Gaps = 1/966 (0%)
Strand=Plus/Plus
Query 57 TTT-TAAGAGATGGCAGCTCCGATTCGATTCTTTGAACTGAACACTGGTGCCAAGTTACC 115
||| ||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||||
Sbjct 11 TTTCTAAAAGATGGCAGCTCCGATCCGATTCTTTGAGCTGAACACTGGTGCCCAGTTACC 70
Query 116 TTGCGTCGGTCTAGGAACCTACGCAATGGTCGCGACAGCGATCGAACAGGCGATTAAGAT 175
|||| ||||||||||||||||||| |||||||| ||| |||||||||| || ||||||||
Sbjct 71 TTGCATCGGTCTAGGAACCTACGCCATGGTCGCCACAACGATCGAACATGCAATTAAGAT 130
Query 176 TGGTTACAGGCATATCGACTGTGCTTCGATTTACGGAAACGAGAAAGAGATTGGTGGTGT 235
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 131 TGGTTACAGGCATATCGACTGTGCTTCGATTTACGGTAACGAGAAAGAGATTGGTGGTGT 190
Query 236 GTTGAAGAAGCTGATAGGTGATGGTTTTGTGAAGCGTGAGGAGTTATTTATCACTTCCAA 295
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 191 GTTGAAGAAGCTGATAGGTGATGGTTTCGTGAAGCGTGAGGAGTTATTTATCACTTCCAA 250
Query 296 ACTCTGGAGCAATGATCATTTACCTGAAGATGTGCCTAAGGCACTGGAAAAAACGTTACA 355
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 251 ACTCTGGAGCAATGATCATTTACCTGAAGATGTGCCTAAGGCATTGGATAAAACATTACA 310
Query 356 GGACTTACAGATTGACTATGTTGATTTATATCTGATACATTGGCCTGCGAGCTTGAAGAA 415
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GGATTTACAGATTGACTATGTTGATTTATATCTGATACATTGGCCTGCGAGCTTGAAGAA 370
Query 416 GGAATCACTAATGCCAACACCTGAGATGCTCACAAAACCTGATATAACTAGCACATGGAA 475
||||||||| |||||||| |||||||||||||| |||||||| ||| |||| ||||||||
Sbjct 371 GGAATCACTTATGCCAACTCCTGAGATGCTCACTAAACCTGACATACCTAGTACATGGAA 430
Query 476 AGCAATGGAAGCTCTCTATGACTCTGGAAAAGCTCGAGCAATCGGTGTAAGCAATTTCTC 535
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 431 AGCAATGGAAGCTCTCTATGACTCTGGAAAAGCTCGAGCAATCGGTGTGAGCAATTTCTC 490
Query 536 GTCGAAGAAGCTTACAGATCTTCTTAACGTGGCACGTGTAACCCCGGCTGTTAACCAAGT 595
|||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 491 GTCGAAGAAGCTCATAGATCTTCTTAACGTGGCACGTGTATCCCCGGCTGTTAACCAAGT 550
Query 596 TGAATGTCACCCAGTTTGGCAGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGT 655
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 551 TGAATGTCACCCAGTTTGGCAGCAACAAGGTCTGCATGAGCTATGCAAATCCAAAGGAGT 610
Query 656 TCACTTATCTGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGT 715
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TCACTTATCCGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGT 670
Query 716 TCTTCAAAACCCGATTGTTACCGAGGTTGCTGAGAAACTTGGAAAGACCACCGCCCAAGT 775
||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 671 TCTTCAAAACCCGATTGTTGCCGAGGTTGCTGAGAAACTTGGAAAGACCACTGCTCAAGT 730
Query 776 GGCTCTCCGTTGGGGACTCCAAACTGGTCATAGTGTTCTACCAAAGAGCTCGAGCGGGGC 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 731 GGCTCTCCGTTGGGGACTCCAAACTGGTCATAGTGTTCTACCAAAGAGCTCGAGCGAGGC 790
Query 836 TCGGCTCAAGGAGAATCTTGATGTTTTTGACTGGTCCATACCGGAAGATCTGTTTACCAA 895
||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||
Sbjct 791 TCGGCTCCAGGAGAATCTTGATGTTTTTGACTGGTCTATACCTGAAGATCTGTTTGTCAA 850
Query 896 GTTCTCTAACATTCCCCAGGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACA 955
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 851 GTTCTCTAACATTCCCCAGGAGAAGTTATGCCGAGCTGCTGAGTTTGCGCATGAGACACA 910
Query 956 CGGCTTCTATAAGACCATTGAGGAATTGTGGGACGGTGAAATTTGAGATAATGTCCCTCC 1015
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 911 CGGCTTCTATAAGACCATTGAGGAGTTGTGGGACGGTGAAATTTGAGATAATGTCCCTCC 970
Query 1016 TTTCTA 1021
||||||
Sbjct 971 TTTCTA 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5