BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37890.1 Length=1503 Score E Sequences producing significant alignments: (Bits) Value Ahg321492 jgi|Araly1|321492|fgenesh1_pm.C_scaffold_4001549 1245 0.0 Ahg485785 jgi|Araly1|485785|fgenesh2_kg.5__1777__AT3G53940.1 693 0.0 > Ahg321492 jgi|Araly1|321492|fgenesh1_pm.C_scaffold_4001549 Length=1044 Score = 1245 bits (674), Expect = 0.0 Identities = 744/778 (96%), Gaps = 3/778 (0%) Strand=Plus/Plus Query 161 ATGAATGTTGACGCTAGAGTCGGTGTTGCGGTCGATGGAGCTCAGAGTGCTCTTAACACT 220 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGAATGTTGACGCTAGAGTCGGTGTTGCGGTGGATGGAGCTCAGAGTGCTCTTAACACT 60 Query 221 GCAACCACTGTTCATAGTAGCGTCGTCATGACGCAGATTAAGCCGCAGGCAAAGCTAGGA 280 ||||||||||||||||||||||||| || | ||||||||||||||||| |||||||| Sbjct 61 GCAACCACTGTTCATAGTAGCGTCG---TGCCTCAGATTAAGCCGCAGGCGAAGCTAGGC 117 Query 281 ACCTTCCAGAATCTCCTCGCTGGTGGTATTGCCGGCGCCATTAGCAAGACATGTACCGCT 340 ||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| Sbjct 118 ACCTTCCAGAATCTCCTCGCTGGAGGTATTGCCGGCGCCTTTAGCAAGACCTGTACCGCT 177 Query 341 CCTCTTGCTCGCCTCACCATCTTGTTTCAGTTGCAAGGGATGCAATCAGAAGGTGCAGTG 400 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 178 CCTCTTGCTCGCCTCACCATCTTGTTTCAGTTGCAAGGCATGCAATCAGAAGGTGCAGTG 237 Query 401 TTAAGCCGTCCAAACTTACGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGA 460 ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TTAAGCCGTCCAAGCTTATGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGA 297 Query 461 GCCTTTTGGAAAGGAAATTTGGTTACTGTAGTACACAGGATTCCTTATACTGCAGTAAAC 520 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GCCTTTTGGAAAGGGAATTTGGTTACTGTAGTACACAGGATTCCTTATACTGCAGTAAAC 357 Query 521 TTCTATGCATATGAGAAGTACAATCTATTTTTCAATTCAAATCCAGTCGTACAGAGTTTT 580 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TTCTTTGCATATGAAAAGTACAATCTATTTTTCAATTCAAATCCAGTCGTACAGAGTTTT 417 Query 581 ATAGGAAATACGAGTGGCAATCCGATAGTGCATTTTGTTAGTGGTGGCTTGGCTGGAATT 640 |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| Sbjct 418 ATAGGAAATACGAGTGGCAACCCGATTGTGCACTTTGTTAGTGGTGGCTTGGCTGGAATT 477 Query 641 ACAGCTGCTACAGCTACATATCCCCTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAGG 700 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 478 ACAGCTGCTACAGCTACCTATCCCCTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAGA 537 Query 701 AATGCAATTTACTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGGA 760 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 AATGCAATGTATTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGGA 597 Query 761 ATTTTGGGTCTATATAAAGGACTTGGTGCTACATTATTGGGTGTTGGACCAAGTCTTGCT 820 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 598 CTTTTGGGTCTATATAAAGGACTTGGTGCTACATTGTTGGGTGTTGGGCCAAGTCTTGCT 657 Query 821 ATCAATTTCGCCGCGTACGAGTCTATGAAATTGTTTTGGCATTCTCATAGGCCAAATGAT 880 ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||| Sbjct 658 ATCAATTTCGCTGCGTATGAGTCTATGAAATCATTTTGGCATTCTCATAGGCCAAACGAT 717 Query 881 TCGGATTTGGTTGTTTCTCTTGTTTCTGGAGGTCTAGCTGGAGCTGTTTCTTCAACAG 938 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TCGAATTTGGTTGTTACTCTTGTTTCTGGAGGTCTAGCTGGAGCTGTTTCTTCAACAG 775 Score = 379 bits (205), Expect = 3e-104 Identities = 227/238 (95%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 937 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAGTGGAAGGAGCTGGTGGAAG 996 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAGTGGAAGGAGCTGGTGGAAG 866 Query 997 AGCAAGAGTATACAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAGG 1056 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 867 AGCGCGAGTATATAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAGG 926 Query 1057 CTTCAAAGGGATATACAGAGGAATATTGCCTGAATATTACAAAGTAGTTCCTGGCGTTGG 1116 | ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 927 CATCAGAGGTTTATACAGAGGAATATTGCCTGAATATTACAAAGTGGTTCCTGGCGTTGG 986 Query 1117 CATCGTCTTCATGACATACGATGCTTTGCGGAGACTCTTAACTTCTCTCCCCGATTGA 1174 ||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| Sbjct 987 CATCGTCTTCATGACATACGAGGCTTTGAGGAGACTCTTAACTTCTCTCCCCAATTGA 1044 > Ahg485785 jgi|Araly1|485785|fgenesh2_kg.5__1777__AT3G53940.1 Length=1482 Score = 693 bits (375), Expect = 0.0 Identities = 706/863 (82%), Gaps = 34/863 (4%) Strand=Plus/Plus Query 292 TCTCCTCGCTGGTGGTATTGCCGGCGCCA-TTAGCAAGACATGTACCGCTCCTCTTGCTC 350 ||| ||||| ||||| || ||||||| || |||| || || || |||||||||||||||| Sbjct 394 TCTTCTCGCCGGTGGAATCGCCGGCG-CATTTAGTAAAACTTGCACCGCTCCTCTTGCTC 452 Query 351 GCCTCACCATCTTGTTTCAGTTGCAAGGGATGCAATCAGAAGGTGC-AGTGTTAAGCCGT 409 |||||||||||||||||||| | ||||| ||||| || |||| ||| | | || ||| || Sbjct 453 GCCTCACCATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCGA-TCTTGAGCAGT 511 Query 410 CCAAAC-TTACGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGAGCCTTTTG 468 |||||| || ||| ||||||||| |||||| |||| |||||||| | |||||| ||||| Sbjct 512 CCAAACATTT-GGCATGAAGCTTCGCGTATTGTCAAGGAGGAAGGTTTTAGAGCATTTTG 570 Query 469 GAAAGGAAATTTGGTTACTGTAG-TACA-CAGGATTCCTTATACTGCAGTAAACTTCTAT 526 ||||||||| ||||||||||||| | || | || |||| ||| |||||| ||||||||| Sbjct 571 GAAAGGAAACTTGGTTACTGTAGCT-CATC-GGCTTCCCTATGGTGCAGTTAACTTCTAT 628 Query 527 GCATATGA-GAAGTACAAT-CTATTTTT-CAATTCAAATCCAGTCGTACAGAGTTTTATA 583 |||||||| ||| ||||| || || || || | | ||||||||| | ||||||| || | Sbjct 629 GCATATGAAGAA-TACAAGACT-TTCTTGCACT-CGAATCCAGTCTTGCAGAGTTATAAA 685 Query 584 GGAAATAC-GA-GTGG-CAATCCGATAGTGCATTTTGTTAGTGGTGGCTTGGCTGGAATT 640 |||||| | | |||| || | | | ||||| ||||| |||||||||||||||||| | Sbjct 686 GGAAATGCAGGTGTGGACATTTC--T-GTGCACTTTGTAAGTGGTGGCTTGGCTGGACTA 742 Query 641 ACAGCTGCTACAGCTACATATCCC-CTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAG 699 ||||||||| ||||||| || ||| ||||||||||| ||||| || ||| |||||||||| Sbjct 743 ACAGCTGCTTCAGCTACCTA-CCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAG 801 Query 700 GAATGCAATTTACTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGG 759 ||| |||| || || |||||| ||| |||| | ||||||||||| ||||||||||| || Sbjct 802 AAATTCAATCTATTATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAAGG 861 Query 760 AATTTTGGGTCTATATAAAGGACTTGGTGCTACATTATTGGGTGTTGGACCAAGTCTTGC 819 |||||||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 862 AATTTTGGGTCTATATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGCCTTGC 921 Query 820 TATCAATTTCGCCGCGTACGAGTCTATGAAATTGTTTTGGCAT-TCTCATAGGCCAAATG 878 |||| ||||| ||||| ||| || | ||| ||||||| | ||||||||||| |||| Sbjct 922 AATCAGCTTCGCAGCGTATGAGACTTTTAAAACATTTTGGC-TCTCTCATAGGCCTAATG 980 Query 879 ATTCGGATTTGGTTGTTTCTCTTGTTTCTGG-AGG-TCTAGCTGGAGCTGTTTCTTCAAC 936 |||| || || ||| ||||| || ||| || ||| ||||| |||||| || || Sbjct 981 ATTCAAATGCCGTGGTTAGTCTTGGTTGTGGCAGCCTCT--CTGGAATTGTTTCCTCGAC 1038 Query 937 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAGT-GGAAGGAGCTGGTGGAA 995 ||| || | ||||||||| || ||||||||||||||||| || ||||||||||||||| Sbjct 1039 AGCGACTTTCCCATTGGACCTGGTGAGAAGAAGAATGCA-GTTGGAAGGAGCTGGTGGGC 1097 Query 996 GAGCAAGAGTATACAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAG 1055 |||| |||| || | ||| ||||||||||||||||||||||||||||| ||| |||||| Sbjct 1098 GAGCGCGAGTCTATACCACGGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAG 1157 Query 1056 GCTTCAAAGGGATATACAGAGGAAT-ATTGCCTGAATATTACAAAGTAGTTCCTGGCGTT 1114 || | | |||| ||||||||||||| || || ||||| |||||||| |||||||| ||| Sbjct 1158 GCATGAGAGGGCTATACAGAGGAATCATA-CCAGAATACTACAAAGTGGTTCCTGGTGTT 1216 Query 1115 GGCATCGTCTTCATGACATACGA 1137 ||||| | ||||||||||| ||| Sbjct 1217 GGCATTGCCTTCATGACATTCGA 1239 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56259291865 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5